BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484545
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 2639 0.0
> AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:10207781-10209899 REVERSE LENGTH=1705
Length=1705
Score = 2639 bits (1429), Expect = 0.0
Identities = 1622/1710 (95%), Gaps = 33/1710 (2%)
Strand=Plus/Plus
Query 1 ATGAATCAAGTGTTTAAGGGATGGTATCGAGGTATGTCAACATCGAGAGGAAGGAGTATG 60
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCAAGTGTTTAAAGGATGGTCTCGAGGTATGTCAACATCGAGAGGAAGGAGTATG 60
Query 61 AGGAGCAAAGTGGAGAGTAGAATGAGGAAAGAGTCTGGTAAGACGTTAAGAGAGATTAGA 120
||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGCAAAGTTGAGAGTAGAATGCGTAAAGAGTCTGGTAAGACGTTAAGAGAGATTAGG 120
Query 121 AGAGCTAAGAAGTTGAAGAAGAAACTCATGACTGATGAAGAAAGACTCATTTACAATCTC 180
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AGAGCGAAGAAGTTGAAGAAGAAACTCATGACTGATGAAGAAAGGCTCATTTACAATCTC 180
Query 181 AAAAGGGCGAAGAAGAAAGTTGCGCTTTTGTTGCAAAAGCTTAAGAAGTATGATCTTCCT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AAAAGGGCGAAGAAGAAAGTTGCGCTTTTGTTGCAAAAGCTCAAGAAGTATGATCTTCCT 240
Query 241 GAGCTGCCATCTCCGGTGCATGATCCCGAGCTTTTCACATCTGAGCAGGTTCAAGCGTTC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GAGCTGCCATCTCCGGTGCATGATCCCGAGCTTTTCACATCCGAGCAGGTTCAAGCGTTC 300
Query 301 AAGAAAATCGGTTTCAAGAACAAAAACTATGTTCCTGTTGGTGTTCGTGGAGTCTTTGGA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAAAATCGGTTTCAAGAATAAAAACTATGTTCCTGTTGGTGTTCGTGGAGTCTTTGGA 360
Query 361 GGAGTGGTACAAAATATGCATATGCACTGGAAGTTTCATGAGACTGTTCAAGTTTGTTGC 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 GGAGTGGTACAAAATATGCATATGCACTGGAAGTTTCATGAGACTGTGCAAGTTTGTTGT 420
Query 421 GATAACTTCCCTAAGGAAAAGATTAAAGAGATGGCGAGCATGATAGCGAGACTGAGCGGC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GATAACTTCCCTAAGGAAAAGATTAAAGAGATGGCGAGCATGATAGCGAGACTGAGTGGC 480
Query 481 GGGGTAGTCATTAACATACATAATGTAAAAACTATTATTATGTTCCGTGGTAGAAACTAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGGTAGTCATTAACATACATAATGTAAAAACTATTATTATGTTCCGTGGTAGAAACTAC 540
Query 541 CGGCAGCCCAAGAACCTAATCCCTGTCAACACCCTCACGAAACGGAAGGCTTTATTCAAA 600
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 541 CGGCAGCCCAAGAACCTAATCCCTGTCAACACCCTTACCAAACGGAAGGCTTTATTCAAA 600
Query 601 GCCAGATTCGAACAAGCGCTTGAGTCTCAGAAGCTGAACATAAAGAAAACAGAACAGCAG 660
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAAGATTCGAACAAGCGCTTGAATCTCAGAAGCTGAACATAAAGAAAACAGAACAGCAG 660
Query 661 CTACGGAGAATGGGTGTTAACCCTGAAGATCCGGTTGCAATGGCTAGCATCCAGAGAGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 CTACGGAGAATGGGTGTTAACCCTGAAGATCCGGTTGCAATGGCTAGCATCCACAGAGTG 720
Query 721 GCCTCAACATTTTTCAATGCAATCGACAAAAAGGAAGGAACCCCGTATGTCTTCCATGGA 780
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 GCCTCGACATTTTTCAATGCAATCGACAAAAAGGAAGGAACACCGTATGTCTTCCATGGA 780
Query 781 GGTAAACAATCAGAACGAGGCGCTAGTGATGACAATAGAGAAGAATCAGAACCGGGTGAT 840
| ||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||
Sbjct 781 GATAAACAATCAGAACGAGGCACTAGTGTTGACAATAGAGAAGAATCTGAACCGGGCGAT 840
Query 841 GAAGATAGTGACCAGGAGGAGCTAGACAGATTCATAGCTGAGATAGAAGAAGCAGCAGAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAGATAGTGACCAGGAGGAGCTAGACAGATTCATAGCTGAGATAGAAGAAGCAGCAGAC 900
Query 901 AAGGAGTGGGAGGAAGAAGAAGCTGCAGAGCAAGAGGAATCTGGTAGGATAAGGTATTGG 960
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AAGGAGTGGGAGGAAGAGGAAGCTGCAGAGCAAGAAGAATCTGGTAGGATAAGGTATTGG 960
Query 961 AACCGAGAAGAGTTTGCAGGAAGAAGCAGAACACCTGAATTGCGTAGTTATGGAGATGCA 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 AACCGAGAAGAGTTTGCAGGAAGAAGCAGAACTCCTGAATTGCGTAGTTATGGAGATGCA 1020
Query 1021 AGTCATGGCTTTAGAAGAAATGAAAGGGATACACATAGCCAGAGGAGACCCAACGATAGT 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGTCATGGCTTTAGAAGAAATGATAGGGATACACATAGCCAGAGGAGACCCAACGATAGT 1080
Query 1081 GATGAAGATGACGA---CGGTGAATTGGATTCTGAGGATGATGAAATTCCAAAGAGATTT 1137
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATGATGATGACGATGACGGTGAATTGGATTCTGAGGATGATGAAATTCCAAAGAGATTT 1140
Query 1138 GATAGAGCAAGATCATCAAACATAAACACAAGAAGGCCGAGAGAGGATTTTAAGAGAAGA 1197
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 1141 GATAGAGCAAGATCATCAAACACAAACACCAGAAGGCCAAGAGAGGATTTTAAGAGAAGA 1200
Query 1198 AGCCCCGATCCTCGACCTCGACCTC-A----A-GTGAGAAGTGATGACGATGTATTGAGT 1251
|||||||||||| |||||||||||| | | ||||| |||||||||||||||||||||
Sbjct 1201 AGCCCCGATCCTAGACCTCGACCTCGAGCTCAAGTGAGGAGTGATGACGATGTATTGAGT 1260
Query 1252 GATCTTGATAACACAATGTGGGATTCAGAAGATGAAGAAGATGCACCACCGGCTAATTAC 1311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GATCTTGATAACACAATGTGGGATTCAGAAGATGAAGAAGATGCACCACCGGCTAATTAT 1320
Query 1312 ATTTCGAGCAGTGATGATGACGAGGATGAAAACAGAAC-GATATCAGCATCAGCATCTAA 1370
|||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1321 ATTTCGAGTAGTGATGATGACGAGGATGAAAACAGAACAG-TATCAGCATCATCATCTAA 1379
Query 1371 ACAACCGAGATTCAGGAACAATAGTTCAAGAGATGGTATCAACAATTCAAAGACTAAGAG 1430
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 ACAATCGAGATTCAGGAACAATAGTTCAAGAGATGGTATCAACAATTCAAAGAGTAAGAG 1439
Query 1431 TGGAAAGCAGACGGACGAGGATTGGGATAGTGATTAGATATGAAGACTACGAGATCACAG 1490
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGGAAAACAGAGGGATGAGGATTGGGATAGTGATTAGATATGAAGACTACGAGATCACAG 1499
Query 1491 AGCTTCTGATATTGTTATTTGTCTTCATTGGCGCTTAACTATGAAAGATGTTAAACTCTG 1550
|| ||||||| ||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 1500 AGTTTCTGATGTTGTTATTTGTCTTCGTTGGTGC----CTATGAAAGATGTTAAACTCTG 1555
Query 1551 GTCTGAATATTGAA-GGCTGATCTATCTATTGTTAGGTTCAGT----GA-AA----G--A 1598
||||||||| | || |||||||||||||||||||||||||||| || || | |
Sbjct 1556 GTCTGAATACTAAAAGGCTGATCTATCTATTGTTAGGTTCAGTTTCTGATAATTCAGTGA 1615
Query 1599 ----TAAAGAACATGATAAGCCAAATTCTGTTCTTTGCATTTGTAATTCAGATTCTGGTA 1654
||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1616 AAGATAAAGAACATGATTAGCCAAATTATATTCTTTGCATTTGTAATTCAGATTATGGTA 1675
Query 1655 TTAG--TGGCAAATTAAGATGATTTGTATG 1682
||| ||||||||||||||||||||||||
Sbjct 1676 TTACAATGGCAAATTAAGATGATTTGTATG 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83132102520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5