BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484546
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27560.1 | Symbols: ATN1 | Protein kinase superfamily protei... 2281 0.0
AT5G40540.1 | Symbols: | Protein kinase superfamily protein | ... 924 0.0
> AT3G27560.1 | Symbols: ATN1 | Protein kinase superfamily protein
| chr3:10210431-10213004 REVERSE LENGTH=1734
Length=1734
Score = 2281 bits (1235), Expect = 0.0
Identities = 1517/1643 (92%), Gaps = 60/1643 (4%)
Strand=Plus/Plus
Query 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTTAATCTCTTTTTTATTTTCTTGTTTCTC 60
||||||||||||||||||||||||||||||||| | ||| |||| ||| ||| | ||||
Sbjct 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTT-A-CTC-CTTTT-TTTCCTTCTCTCTC 56
Query 61 AAAACCCCTAAAATAAGAAACTTTTTTAGaaaaaaa-aaTCTTTAACCAAACCAACACGA 119
||||||||||||||||||||| || | ||||||| |||| ||||||||||||||||||
Sbjct 57 AAAACCCCTAAAATAAGAAAC---TTCA-AAAAAAATAATCATTAACCAAACCAACACGA 112
Query 120 ATCATC-AAGTTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAG---TTCTTCCC 175
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 113 ATCATCAAAATTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAGTTCTTCTTCCC 172
Query 176 ATTCTTCTCTCAAATTCCCAACTTTTCCGTGCAGttttttttgttttctttttATAGTTG 235
|||||||||||||||||||| |||| |||| || | |||||||||||||| | ||||||
Sbjct 173 ATTCTTCTCTCAAATTCCCATCTTTGCCGTTCA-ATGTTTTTGTTTTCTTTATGTAGTTG 231
Query 236 ACGAATTAGGATTTTGATTTTGATTGTCGTCTTCTTCTTTCTTTATTCTGTGTTCGGGGA 295
||| | | ||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 232 ACG-A--A--ATTAGGATTTTGATTGTCGT-GT-TTCTTTCTTTATTCTGTGTTCGGGGA 284
Query 296 ATCC-TTG---A-TTTCTCTCTTTATATTCCACC----AAAAAAGCATC---TTTGTTTC 343
|||| ||| | ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 285 ATCCTTTGATAATTTTCTCTCTTTATATTCCACCAAAAAAAAAAGCATCTTTTTTGTTTC 344
Query 344 TTTATCTATCTGATTGTTGTATAG-TTCTCAATTCCAATACCAAACAGAATGATTAATCA 402
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 345 TTTATCTATCTGATTGTTGTATAGTTTCTCAATTCCAAAACCAAACAGAATGATTAATCA 404
Query 403 ATCAAAAAGGGCCCAGCTTTGACATA----TCTC--TCTCTC--TAGCTAGCTAGGG-TT 453
|||||||||||||||||||||||||| |||| |||||| |||| | |||||| ||
Sbjct 405 ATCAAAAAGGGCCCAGCTTTGACATATCTCTCTCTTTCTCTCTTTAGCCAACTAGGGTTT 464
Query 454 TTGTGATTTTTGTTCT-GGG-T-TTGTGGAAAAATGGGATCTGCAAGTGGGTTTTACTCA 510
|||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||
Sbjct 465 TTGTGATTTTTGTTCTGGGGTTGTTGTGGGAAAATGGGATCTGCAAGTGGGTTTTACTCG 524
Query 511 AATGAAGATTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGGT 570
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AACGAAGAGTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGGT 584
Query 571 CCTAAGATCGGTGAAGGTGCTCATGCTAAAGTTTATGAGGGAAAGTATAGAAACCAAACA 630
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 585 CCTAAGATCGGTGAAGGTGCTCATGCCAAAGTTTATGAGGGAAAGTATAGAAACCAAACA 644
Query 631 GTGGCGATTAAGATTATTAAAAGAGGAGAATCCCCTGAAGAGATTGCTAAACGAGATAAC 690
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 645 GTGGCGATTAAGATTATTAAAAGAGGAGAGTCCCCTGAAGAGATTGCTAAACGAGATAAC 704
Query 691 CGGTTTGCGAGAGAGATTGCTATGCTGTCTAAAGTCCAGCACAAGAATTTGGTCAAGTTC 750
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 705 CGGTTTGCGAGAGAGATTGCTATGTTGTCTAAAGTCCAGCACAAGAATTTAGTCAAGTTC 764
Query 751 ATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACCGAGCTTCTACTAGGCGGTACA 810
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 765 ATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACTGAGCTTCTACTAGGCGGTACA 824
Query 811 TTGCGAAAATATCTAGTGAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGGA 870
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTGCGTAAATATCTAGTCAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGGT 884
Query 871 TTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCATGGAATCATTCACCGC 930
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 885 TTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGC 944
Query 931 GATCTTAAACCAGAGAATTTGATCTTATCAGCAGATCATAAGACAGTGAAACTTGCTGAT 990
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 945 GATCTTAAACCAGAGAATTTGATCTTATCAGCGGATCATAAGACAGTGAAACTCGCTGAT 1004
Query 991 TTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATAC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATAC 1064
Query 1051 CGATGGATGGCCCCTGAGCTTTACAGTACGGTTACATTAAGGCAAGGAGAGAAGAAACAT 1110
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1065 CGATGGATGGCCCCCGAGCTCTACAGTACGGTTACGTTAAGGCAAGGAGAGAAGAAACAC 1124
Query 1111 TATAATCATAAAGTAGATGCTTACAGCTTCGCCATTGTCTTGTGGGAACTTATTCTCAAC 1170
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1125 TATAATCATAAAGTAGATGCTTACAGCTTTGCCATTGTCTTGTGGGAACTTATTCTCAAC 1184
Query 1171 AAGTTACCATTTGAAGGCATGTCCAATCTACAAGCAGCCTATGCTGCAGCATTCAAGAAC 1230
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1185 AAGTTACCATTTGAAGGCATGTCAAATCTACAAGCAGCATATGCTGCTGCATTCAAGAAC 1244
Query 1231 TTGAGGCCGAGTGCAGAAGATCTACCAGGAGATTTAGAGATGATTGTAACTTCATGCTGG 1290
|||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1245 TTGAGGCCAAGTGCAGAGGATTTACCAGGAGACTTAGAGATGATTGTAACTTCATGCTGG 1304
Query 1291 AAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATCCAAATGCTCCTCCGTTAC 1350
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1305 AAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATTCAAATGCTCCTCCGTTAC 1364
Query 1351 CTCACCACTGTTTCATCAGCACCACAGATTATCCCTCCACCGAATCGACGAGTTTTCTCT 1410
|||||||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct 1365 CTCACCACTGTTTCG---GCACCACAGATCATTCCTCCACCGAATCGACGAGTCTTCTCA 1421
Query 1411 TCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACATGCTCTCTGATGTCTGTCAGA 1470
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1422 TCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACTTGCTCTCTGATGTCTGTCAGA 1481
Query 1471 GATGGAGACGTTTCTCGCCAGACCGTTAACACGGCAGATTCGTCAGAGAAACAACCAAAA 1530
|| |||||||||||||| |||||||||||||| || ||||| || ||||||||| |||||
Sbjct 1482 GACGGAGACGTTTCTCGTCAGACCGTTAACACTGCTGATTCATCGGAGAAACAAACAAAA 1541
Query 1531 GGAAGCTTCTTCTCCTGCTGCTCATAGATGAAAAATTTATAATATATTTGGTTGTAATCT 1590
||||||||||||||||||||||||||||||| | ||| | | ||| | |||||||
Sbjct 1542 GGAAGCTTCTTCTCCTGCTGCTCATAGATGA----TGTAT--T-TCGTTG-T-GTAATCT 1592
Query 1591 GTAAA-AATAACGGGAGGAAAGT 1612
||||| || |||| |||||||||
Sbjct 1593 GTAAAGAA-AACGAGAGGAAAGT 1614
> AT5G40540.1 | Symbols: | Protein kinase superfamily protein
| chr5:16237298-16239601 FORWARD LENGTH=1525
Length=1525
Score = 924 bits (500), Expect = 0.0
Identities = 837/1000 (84%), Gaps = 21/1000 (2%)
Strand=Plus/Plus
Query 482 AAATGGGATCTGCAAGTGGGTTTTACTCAAATGAAGAT-TTTGAATTGGATCCTAAATGG 540
|||||||||||| | |||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 331 AAATGGGATCTGTTACTGGGTTTTACTCAAATGAAG-TGTTTGAATTAGATCCTAAATGG 389
Query 541 CTTGTTGATCCTCGTCATCTCTTTGTTGGTCCTAAGATCGGTGAAGGTGCTCATGCTAAA 600
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 390 GTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAA 449
Query 601 GTTTATGAGGGAAAGTAT-AGAAACCAAACAGTGGCGATTAAGATTATTAAAAGAGGAGA 659
| ||||| ||||||||| || ||| ||||||| || ||||||||| |||||||||||||
Sbjct 450 ATCTATGAAGGAAAGTATAAG-AACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGA 508
Query 660 ATC-CCCTGAAGAGATTGCTAAACGAGATAACCGGTTTGCGAGAGAGAT-TGCTATGCTG 717
||| ||| ||||||||||| ||| |||| | | | ||||| |||||| | | ||||| ||
Sbjct 509 ATCTCCC-GAAGAGATTGCGAAAAGAGAGAGCAGATTTGCAAGAGAGGTCT-CTATGTTG 566
Query 718 TCTAAAGTCCAGCACAAGAATTTGGTCAAGTTCATTGGAGCGTGCAAAGAACCCATGATG 777
|||| ||| || ||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 567 TCTAGAGTTCAACACAAAAATTTGGTCAAGTTCATTGGAGCTTGCAAAGAACCAATCATG 626
Query 778 GTTATAGTTACCGAGCTTCTACTAGGCGGTACATTGCGAAAATATCTAGTGAGCTTACGG 837
|||||||| ||||||||| |||| || ||||||||||| ||||| || || ||||| ||
Sbjct 627 GTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGT 686
Query 838 CCAAAGCGTTTAGACATTCGTTTGGCTGTTGGATTTGCTCTTGACATTGCTCGTGCAATG 897
||| | |||| ||||| ||| | |||||||||| ||| |||||||||||||| || |||
Sbjct 687 CCAGGGAGTTTGGACATACGTGTAGCTGTTGGATATGCCCTTGACATTGCTCGGGCGATG 746
Query 898 GAATGTTTACATTCCCATGGAATCATTCACCGCGATCTTAAACCAGAGAATTTGATCTTA 957
||||| ||||| || |||||| |||| || |||||||| |||||||||| |||||||||
Sbjct 747 GAATGCTTACACTCTCATGGAGTCATCCATCGCGATCTCAAACCAGAGAGCTTGATCTTA 806
Query 958 TCAGCAGATCATAAGACAGTGAAACTTGCTGATTTCGGTTTAGCTAGAGAAGAATCATTA 1017
| || ||| | ||||| || ||||| || ||||| ||||||||||||||||||||||||
Sbjct 807 ACTGCGGATTACAAGACTGTTAAACTAGCAGATTTTGGTTTAGCTAGAGAAGAATCATTA 866
Query 1018 ACCGAGATGATGACCGCAGAGACTGGTACATACCGATGGATGGC-CCCTGAGCTTTACAG 1076
|||||||||||||||||||| ||||||||||| || |||||||| ||| |||||||||||
Sbjct 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCC-GAGCTTTACAG 925
Query 1077 TACGGTTACATTAAGGCAAGGAGAGAAGAAACATTATAATCATAAAGTAGATGCTTACAG 1136
|||||| || || ||||| || ||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 926 TACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAG 985
Query 1137 CTTCGCCATTGTCTTGTGGGAACTTATTCTCAACAAGTTACCATTTGAAGGCATGTCCAA 1196
||||||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| ||
Sbjct 986 CTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAA 1045
Query 1197 TCTACAAGCAGCCTATGCTGCAGCATTCAAGAACTTGAGGCCGAGTGCAGAAGATCTACC 1256
||| ||||| || || ||||| |||||||||||| ||||||| || ||||| ||| ||||
Sbjct 1046 TCTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACC 1105
Query 1257 AGGAG-ATTTAG-AGATGATTGTAACTTCATGCTGGAAAGAAGATCCTAACGAACGGCCA 1314
| || |||||| | ||||||||||| || ||||||||||| ||||| ||||| || |||
Sbjct 1106 AA-AGGATTTAGCA-ATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCA 1163
Query 1315 AATTTCACAGAGATAATCCAAATGCTCCTCCGTTACCTCACCACTGTTTCATCAGCACCA 1374
|| ||||||||||| || |||||||| || |||| |||| |||| | |||||| ||
Sbjct 1164 AACTTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCA--ACTG 1221
Query 1375 CAGATTATCCCTCCA-CCGAATCGACGAGTTTTCTCTTCAGAAAACATAGTTTTATCACC 1433
|| || | ||||| || | | ||| |||||||| || ||||||| || || ||||
Sbjct 1222 -AGCTTGTTCCTCCGGCC-ATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACC 1279
Query 1434 GGAATCTCCCGGAACATGCTC-TCTGATGTCTGTCAGAGA 1472
||||| || ||||| ||||| | ||||| |||| |||||
Sbjct 1280 AGAATCGCCGGGAACTTGCTCAT-TGATGACTGTTAGAGA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5