BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484546 Length=1632 Score E Sequences producing significant alignments: (Bits) Value AT3G27560.1 | Symbols: ATN1 | Protein kinase superfamily protei... 2281 0.0 AT5G40540.1 | Symbols: | Protein kinase superfamily protein | ... 924 0.0 > AT3G27560.1 | Symbols: ATN1 | Protein kinase superfamily protein | chr3:10210431-10213004 REVERSE LENGTH=1734 Length=1734 Score = 2281 bits (1235), Expect = 0.0 Identities = 1517/1643 (92%), Gaps = 60/1643 (4%) Strand=Plus/Plus Query 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTTAATCTCTTTTTTATTTTCTTGTTTCTC 60 ||||||||||||||||||||||||||||||||| | ||| |||| ||| ||| | |||| Sbjct 1 ACGCGGAAAAAGCAAACAACTTTCGATTTCTTT-A-CTC-CTTTT-TTTCCTTCTCTCTC 56 Query 61 AAAACCCCTAAAATAAGAAACTTTTTTAGaaaaaaa-aaTCTTTAACCAAACCAACACGA 119 ||||||||||||||||||||| || | ||||||| |||| |||||||||||||||||| Sbjct 57 AAAACCCCTAAAATAAGAAAC---TTCA-AAAAAAATAATCATTAACCAAACCAACACGA 112 Query 120 ATCATC-AAGTTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAG---TTCTTCCC 175 |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 113 ATCATCAAAATTTTGACCATTTCTCCATCAGTTCCAGTGTCAACTTCAGTTCTTCTTCCC 172 Query 176 ATTCTTCTCTCAAATTCCCAACTTTTCCGTGCAGttttttttgttttctttttATAGTTG 235 |||||||||||||||||||| |||| |||| || | |||||||||||||| | |||||| Sbjct 173 ATTCTTCTCTCAAATTCCCATCTTTGCCGTTCA-ATGTTTTTGTTTTCTTTATGTAGTTG 231 Query 236 ACGAATTAGGATTTTGATTTTGATTGTCGTCTTCTTCTTTCTTTATTCTGTGTTCGGGGA 295 ||| | | ||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct 232 ACG-A--A--ATTAGGATTTTGATTGTCGT-GT-TTCTTTCTTTATTCTGTGTTCGGGGA 284 Query 296 ATCC-TTG---A-TTTCTCTCTTTATATTCCACC----AAAAAAGCATC---TTTGTTTC 343 |||| ||| | ||||||||||||||||||||| ||||||||||| |||||||| Sbjct 285 ATCCTTTGATAATTTTCTCTCTTTATATTCCACCAAAAAAAAAAGCATCTTTTTTGTTTC 344 Query 344 TTTATCTATCTGATTGTTGTATAG-TTCTCAATTCCAATACCAAACAGAATGATTAATCA 402 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 345 TTTATCTATCTGATTGTTGTATAGTTTCTCAATTCCAAAACCAAACAGAATGATTAATCA 404 Query 403 ATCAAAAAGGGCCCAGCTTTGACATA----TCTC--TCTCTC--TAGCTAGCTAGGG-TT 453 |||||||||||||||||||||||||| |||| |||||| |||| | |||||| || Sbjct 405 ATCAAAAAGGGCCCAGCTTTGACATATCTCTCTCTTTCTCTCTTTAGCCAACTAGGGTTT 464 Query 454 TTGTGATTTTTGTTCT-GGG-T-TTGTGGAAAAATGGGATCTGCAAGTGGGTTTTACTCA 510 |||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||| Sbjct 465 TTGTGATTTTTGTTCTGGGGTTGTTGTGGGAAAATGGGATCTGCAAGTGGGTTTTACTCG 524 Query 511 AATGAAGATTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGGT 570 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 AACGAAGAGTTTGAATTGGATCCTAAATGGCTTGTTGATCCTCGTCATCTCTTTGTTGGT 584 Query 571 CCTAAGATCGGTGAAGGTGCTCATGCTAAAGTTTATGAGGGAAAGTATAGAAACCAAACA 630 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 585 CCTAAGATCGGTGAAGGTGCTCATGCCAAAGTTTATGAGGGAAAGTATAGAAACCAAACA 644 Query 631 GTGGCGATTAAGATTATTAAAAGAGGAGAATCCCCTGAAGAGATTGCTAAACGAGATAAC 690 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 645 GTGGCGATTAAGATTATTAAAAGAGGAGAGTCCCCTGAAGAGATTGCTAAACGAGATAAC 704 Query 691 CGGTTTGCGAGAGAGATTGCTATGCTGTCTAAAGTCCAGCACAAGAATTTGGTCAAGTTC 750 |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 705 CGGTTTGCGAGAGAGATTGCTATGTTGTCTAAAGTCCAGCACAAGAATTTAGTCAAGTTC 764 Query 751 ATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACCGAGCTTCTACTAGGCGGTACA 810 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 765 ATTGGAGCGTGCAAAGAACCCATGATGGTTATAGTTACTGAGCTTCTACTAGGCGGTACA 824 Query 811 TTGCGAAAATATCTAGTGAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGGA 870 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 825 TTGCGTAAATATCTAGTCAGCTTACGGCCAAAGCGTTTAGACATTCGTTTGGCTGTTGGT 884 Query 871 TTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCATGGAATCATTCACCGC 930 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 885 TTTGCTCTTGACATTGCTCGTGCAATGGAATGTTTACATTCCCACGGTATCATTCACCGC 944 Query 931 GATCTTAAACCAGAGAATTTGATCTTATCAGCAGATCATAAGACAGTGAAACTTGCTGAT 990 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 945 GATCTTAAACCAGAGAATTTGATCTTATCAGCGGATCATAAGACAGTGAAACTCGCTGAT 1004 Query 991 TTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATAC 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 TTCGGTTTAGCTAGAGAAGAATCATTAACCGAGATGATGACCGCAGAGACTGGTACATAC 1064 Query 1051 CGATGGATGGCCCCTGAGCTTTACAGTACGGTTACATTAAGGCAAGGAGAGAAGAAACAT 1110 |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1065 CGATGGATGGCCCCCGAGCTCTACAGTACGGTTACGTTAAGGCAAGGAGAGAAGAAACAC 1124 Query 1111 TATAATCATAAAGTAGATGCTTACAGCTTCGCCATTGTCTTGTGGGAACTTATTCTCAAC 1170 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1125 TATAATCATAAAGTAGATGCTTACAGCTTTGCCATTGTCTTGTGGGAACTTATTCTCAAC 1184 Query 1171 AAGTTACCATTTGAAGGCATGTCCAATCTACAAGCAGCCTATGCTGCAGCATTCAAGAAC 1230 ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 1185 AAGTTACCATTTGAAGGCATGTCAAATCTACAAGCAGCATATGCTGCTGCATTCAAGAAC 1244 Query 1231 TTGAGGCCGAGTGCAGAAGATCTACCAGGAGATTTAGAGATGATTGTAACTTCATGCTGG 1290 |||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1245 TTGAGGCCAAGTGCAGAGGATTTACCAGGAGACTTAGAGATGATTGTAACTTCATGCTGG 1304 Query 1291 AAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATCCAAATGCTCCTCCGTTAC 1350 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1305 AAAGAAGATCCTAACGAACGGCCAAATTTCACAGAGATAATTCAAATGCTCCTCCGTTAC 1364 Query 1351 CTCACCACTGTTTCATCAGCACCACAGATTATCCCTCCACCGAATCGACGAGTTTTCTCT 1410 |||||||||||||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct 1365 CTCACCACTGTTTCG---GCACCACAGATCATTCCTCCACCGAATCGACGAGTCTTCTCA 1421 Query 1411 TCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACATGCTCTCTGATGTCTGTCAGA 1470 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1422 TCAGAAAACATAGTTTTATCACCGGAATCTCCCGGAACTTGCTCTCTGATGTCTGTCAGA 1481 Query 1471 GATGGAGACGTTTCTCGCCAGACCGTTAACACGGCAGATTCGTCAGAGAAACAACCAAAA 1530 || |||||||||||||| |||||||||||||| || ||||| || ||||||||| ||||| Sbjct 1482 GACGGAGACGTTTCTCGTCAGACCGTTAACACTGCTGATTCATCGGAGAAACAAACAAAA 1541 Query 1531 GGAAGCTTCTTCTCCTGCTGCTCATAGATGAAAAATTTATAATATATTTGGTTGTAATCT 1590 ||||||||||||||||||||||||||||||| | ||| | | ||| | ||||||| Sbjct 1542 GGAAGCTTCTTCTCCTGCTGCTCATAGATGA----TGTAT--T-TCGTTG-T-GTAATCT 1592 Query 1591 GTAAA-AATAACGGGAGGAAAGT 1612 ||||| || |||| ||||||||| Sbjct 1593 GTAAAGAA-AACGAGAGGAAAGT 1614 > AT5G40540.1 | Symbols: | Protein kinase superfamily protein | chr5:16237298-16239601 FORWARD LENGTH=1525 Length=1525 Score = 924 bits (500), Expect = 0.0 Identities = 837/1000 (84%), Gaps = 21/1000 (2%) Strand=Plus/Plus Query 482 AAATGGGATCTGCAAGTGGGTTTTACTCAAATGAAGAT-TTTGAATTGGATCCTAAATGG 540 |||||||||||| | |||||||||||||||||||| | |||||||| |||||||||||| Sbjct 331 AAATGGGATCTGTTACTGGGTTTTACTCAAATGAAG-TGTTTGAATTAGATCCTAAATGG 389 Query 541 CTTGTTGATCCTCGTCATCTCTTTGTTGGTCCTAAGATCGGTGAAGGTGCTCATGCTAAA 600 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 390 GTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAA 449 Query 601 GTTTATGAGGGAAAGTAT-AGAAACCAAACAGTGGCGATTAAGATTATTAAAAGAGGAGA 659 | ||||| ||||||||| || ||| ||||||| || ||||||||| ||||||||||||| Sbjct 450 ATCTATGAAGGAAAGTATAAG-AACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGA 508 Query 660 ATC-CCCTGAAGAGATTGCTAAACGAGATAACCGGTTTGCGAGAGAGAT-TGCTATGCTG 717 ||| ||| ||||||||||| ||| |||| | | | ||||| |||||| | | ||||| || Sbjct 509 ATCTCCC-GAAGAGATTGCGAAAAGAGAGAGCAGATTTGCAAGAGAGGTCT-CTATGTTG 566 Query 718 TCTAAAGTCCAGCACAAGAATTTGGTCAAGTTCATTGGAGCGTGCAAAGAACCCATGATG 777 |||| ||| || ||||| ||||||||||||||||||||||| ||||||||||| || ||| Sbjct 567 TCTAGAGTTCAACACAAAAATTTGGTCAAGTTCATTGGAGCTTGCAAAGAACCAATCATG 626 Query 778 GTTATAGTTACCGAGCTTCTACTAGGCGGTACATTGCGAAAATATCTAGTGAGCTTACGG 837 |||||||| ||||||||| |||| || ||||||||||| ||||| || || ||||| || Sbjct 627 GTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGT 686 Query 838 CCAAAGCGTTTAGACATTCGTTTGGCTGTTGGATTTGCTCTTGACATTGCTCGTGCAATG 897 ||| | |||| ||||| ||| | |||||||||| ||| |||||||||||||| || ||| Sbjct 687 CCAGGGAGTTTGGACATACGTGTAGCTGTTGGATATGCCCTTGACATTGCTCGGGCGATG 746 Query 898 GAATGTTTACATTCCCATGGAATCATTCACCGCGATCTTAAACCAGAGAATTTGATCTTA 957 ||||| ||||| || |||||| |||| || |||||||| |||||||||| ||||||||| Sbjct 747 GAATGCTTACACTCTCATGGAGTCATCCATCGCGATCTCAAACCAGAGAGCTTGATCTTA 806 Query 958 TCAGCAGATCATAAGACAGTGAAACTTGCTGATTTCGGTTTAGCTAGAGAAGAATCATTA 1017 | || ||| | ||||| || ||||| || ||||| |||||||||||||||||||||||| Sbjct 807 ACTGCGGATTACAAGACTGTTAAACTAGCAGATTTTGGTTTAGCTAGAGAAGAATCATTA 866 Query 1018 ACCGAGATGATGACCGCAGAGACTGGTACATACCGATGGATGGC-CCCTGAGCTTTACAG 1076 |||||||||||||||||||| ||||||||||| || |||||||| ||| ||||||||||| Sbjct 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCC-GAGCTTTACAG 925 Query 1077 TACGGTTACATTAAGGCAAGGAGAGAAGAAACATTATAATCATAAAGTAGATGCTTACAG 1136 |||||| || || ||||| || ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 926 TACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAG 985 Query 1137 CTTCGCCATTGTCTTGTGGGAACTTATTCTCAACAAGTTACCATTTGAAGGCATGTCCAA 1196 ||||||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| || Sbjct 986 CTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAA 1045 Query 1197 TCTACAAGCAGCCTATGCTGCAGCATTCAAGAACTTGAGGCCGAGTGCAGAAGATCTACC 1256 ||| ||||| || || ||||| |||||||||||| ||||||| || ||||| ||| |||| Sbjct 1046 TCTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACC 1105 Query 1257 AGGAG-ATTTAG-AGATGATTGTAACTTCATGCTGGAAAGAAGATCCTAACGAACGGCCA 1314 | || |||||| | ||||||||||| || ||||||||||| ||||| ||||| || ||| Sbjct 1106 AA-AGGATTTAGCA-ATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCA 1163 Query 1315 AATTTCACAGAGATAATCCAAATGCTCCTCCGTTACCTCACCACTGTTTCATCAGCACCA 1374 || ||||||||||| || |||||||| || |||| |||| |||| | |||||| || Sbjct 1164 AACTTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCA--ACTG 1221 Query 1375 CAGATTATCCCTCCA-CCGAATCGACGAGTTTTCTCTTCAGAAAACATAGTTTTATCACC 1433 || || | ||||| || | | ||| |||||||| || ||||||| || || |||| Sbjct 1222 -AGCTTGTTCCTCCGGCC-ATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACC 1279 Query 1434 GGAATCTCCCGGAACATGCTC-TCTGATGTCTGTCAGAGA 1472 ||||| || ||||| ||||| | ||||| |||| ||||| Sbjct 1280 AGAATCGCCGGGAACTTGCTCAT-TGATGACTGTTAGAGA 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80622075270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5