BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484547
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27570.1 | Symbols: | Sucrase/ferredoxin-like family protei... 1999 0.0
> AT3G27570.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr3:10213996-10216736 REVERSE LENGTH=1475
Length=1475
Score = 1999 bits (1082), Expect = 0.0
Identities = 1267/1354 (94%), Gaps = 21/1354 (2%)
Strand=Plus/Plus
Query 1 AAAATGTTTCTTTTTCGAAAAATTATTTAAATGAAAACGAAATTAACATCTTCATTTCGA 60
||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||
Sbjct 26 AAAATGTTTCTTTTTCGAAAATTTATTTAAATGATAACGAAATTTACATCTCCATTTCGA 85
Query 61 TTGATTCGcttcttcaactctctctcttcttcttcttctatctgcttctGCGAAACCCTA 120
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 86 TTGATTCGCTTCTTCAACTCTCTCTCTTCTTCTTCTTCTATTTGCTTCTGTGAAACCCTA 145
Query 121 GATTTTGGTGT---GAAGAAGCCTTCAATGGCGGAGGAAGTAGCAGAGAACGTTAACGCT 177
||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 146 GATTTTGGTGTGAGGAAGAAGACTTCAATGGCGGAAGAAGTAGCAGAGAACGTTAACGCA 205
Query 178 GTGCCGGTTTCGGAAGACGAGCTTTATGGATTTAAACGATCGGAGATGTACAGTGGTACT 237
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 206 GTCCCGGTTTCGGAAGACGAGCTTTACGGATTTAAACGATCGGAGATGTACAGTGGTACT 265
Query 238 CTCGCCGGTTCCGTTGGTCCGTACGGTCGTCATGTTTTCCTTTGTTATAAGAGTCATGAG 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 266 CTCGCCGGTTCCGTTGGTCCGTACGGTCGTCATGTTTTCCTTTGTTACAAGAGTCATGAG 325
Query 298 ACTTGGCTTCCTCGTGTTGAAACTGAAGGTCTTCCTCAGAGTTTCGCTAAATCGTTTAAG 357
||||||||||||||||||||||||||||| ||||||||| ||||||| || | |||||||
Sbjct 326 ACTTGGCTTCCTCGTGTTGAAACTGAAGGACTTCCTCAGCGTTTCGCGAAGTTGTTTAAG 385
Query 358 GATCGGAAAGCTGATTTCGGAGTTGAGACGAAGCTTAC-G-GTGT-GTGGTGGTGGTGAA 414
||||| ||||||||||||| ||||||||||||||||| | |||| ||||||||||||||
Sbjct 386 GATCGTAAAGCTGATTTCGCTGTTGAGACGAAGCTTACGGTGTGTGGTGGTGGTGGTGAA 445
Query 415 TCTGATGGAGATGTGTTGATTTTCCCGGAGATGGTTAGATACAAGGCGATTCAGGAGACG 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 446 TCTGATGGAGATGTGTTGATTTTCCCGGAGATGGTTAGATACAAGGCGATTCAGGACACA 505
Query 475 GATGTGGATGCTTTTGTGGAAGATGTGCTTGCGAAAGGAAAACCATGGACTTCTGGGGTT 534
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 506 GATGTGGATGCTTTTGTGGAAGATGTGCTTGTGAAAGGAAAAACATGGACTTCTGGGATT 565
Query 535 CAGGAAGAGTTAAGTGGTTCATTTGTGTTTGTGTGTGCTCATGGTAGCCGGGATAAGAGA 594
||||||||||| | |||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 566 CAGGAAGAGTTGACTGGTTCCTTTGTGTTTGTGTGCGCTCATGGTAGCCGAGACAAGAGA 625
Query 595 TGTGGTGTTTGTGGACCAGTTCTTATGGAGAAGTTCGAGCAGGAGATAGGTTCACGAGGA 654
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 626 TGTGGTGTTTGTGGACCAGTTCTTATGGAGAAGTTCGAGCAGGAGATAAGTTCACGTGGA 685
Query 655 CTTTCAGAAAAAATCTTTGTTTTGCCGTGTTCTCATATCGGTGGACACAAGTATGCTGGA 714
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 686 CTTTCAGACAAAATCTTTGTTTTGCCGTGTTCTCATATCGGTGGGCACAAGTATGCTGGA 745
Query 715 AATTTGATTGTCTTCAGCCCTGATTCAGCTGGAAATGTTTCTGGCCACTGGTATGGCTAT 774
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 746 AATTTGATTGTCTTCAGCCCTGATTCAGCTGGAAATGTTTCTGGCCATTGGTATGGCTAT 805
Query 775 GTGACTCCTGATGACGTTCCTGCAATGCTTGATCAGCATATTGCAAATGGAGAAATCATA 834
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 806 GTGACTCCTGATGACGTGCCTGCAATGCTTGATCAGCATATTGCAAAAGGAGAAATCATT 865
Query 835 CAAAACCTTTCCAGGGGAGGGATGAGACTAAGACCCGACGGTGAGGAAGCTGAAAAAGAG 894
|||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||
Sbjct 866 CAAAACCTTTCCAGAGGCCAGATGAGACTAAGACCCGAGGGTGAGGAAGCTGAGAAAGAG 925
Query 895 GATGAGCATAAAATCCCAAACGGAAACAGTGTAGTGGTGGAAGCACGCGAACCTGTGGAG 954
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 926 GATGAGCATAAAATCCCAAACGGAAACAGTGTAATGGTGGAAGAACGCGAACCTGTGGAG 985
Query 955 CAGAAAGGGTTCACAGGAGGTTGTTGCCAAGGTGCAAACGGAGTTTCATGTTGCCAAGAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CAGAAAGGGTTCACAGGAGGTTGTTGCCAAGGTGCAAACGGAGTTTCATGTTGCCAAGAA 1045
Query 1015 CAAGCTCCAGAACCAGTGAAGAAAGAAGAATCCATGAAGCTAAACTGGTTGAGATCGATG 1074
|||||| |||| ||||| |||||||||| || |||||||||||||||||||| |||||||
Sbjct 1046 CAAGCTGCAGAGCCAGTCAAGAAAGAAGGATGCATGAAGCTAAACTGGTTGAAATCGATG 1105
Query 1075 GGGAAAGAAGAGGTTCTCTTGGGAGCAGCAGCAGTATCAGCTGTCGCAACCATAGCCGTG 1134
||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||
Sbjct 1106 GGGAAAGAAGAGGTTCTCTTGGGAGCAGCAGTAGTTTCAGCTGTCGCAACCGTTGCCGTG 1165
Query 1135 GCTTACAGCATTTACAGAAGGTCAGGTTAAGAACCTGAACCCACCCTCCTCTTTTTTACC 1194
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1166 GCTTACAGCATTTACAGAAGGTCAGGTTAAGAACCTGAACC-ACCCTCCTCTTTTT-ACA 1223
Query 1195 CTTTaaaaaa-aaaCTTTATTTTTGGTAGCCATATTATATAGCAAGGTAAAGGaaaaaaa 1253
|||| || || |||||||||||||||||||||||||||| | ||| |||||||| ||||
Sbjct 1224 CTTTTAAGAAGAAACTTTATTTTTGGTAGCCATATTATA--G-AAG-TAAAGGAAGAAAA 1279
Query 1254 aaaaaaaaaaCATGGAGAGGTGATAATAATCTTTTGGAACTATGTAACCATCATTTGGTT 1313
|||| ||||||||||| | | ||||||||||||||||| ||||||||||||||||
Sbjct 1280 GAAAA-----CATGGAGAGGT-A-A-TAATCTTTTGGAACTATATAACCATCATTTGGTT 1331
Query 1314 TCCGTATGGGCAATACAGGAATGTGATGTAATCT 1347
|| ||||||||||| |||||||| ||||||||||
Sbjct 1332 TCGGTATGGGCAATGCAGGAATGGGATGTAATCT 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5