BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484550
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27610.2 | Symbols: | Nucleotidylyl transferase superfamily... 1840 0.0
AT2G01220.2 | Symbols: | Nucleotidylyl transferase superfamily... 1323 0.0
> AT3G27610.2 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr3:10225525-10228192 REVERSE LENGTH=1417
Length=1417
Score = 1840 bits (996), Expect = 0.0
Identities = 1168/1251 (93%), Gaps = 12/1251 (1%)
Strand=Plus/Plus
Query 1 TTTCTCTTTCTGCTTCCACAGAGACAACGAGAGAAACAATGGCAGACTCTGCGATCCGAA 60
||| ||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 3 TTTATCTTTCTGCTTTCACAGAGACGACGAGAGAAACAATGGCGGAGTCTGCGATCCGAA 62
Query 61 CCATCGTCGAATCAATTCACTCATCACCGACGCAAGCCGTCGTGTATCTTTCCGGCGGTG 120
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 63 CCATCGTCGAATCAATTCACTCATCGCCGACGCAAGCCGTCGTGTATCTCTCCGGCGGTG 122
Query 121 CCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTTGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 123 CCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTCGAAG 182
Query 181 CCGTGGTTCCATATTCCATGATCTCTATGGTTCAATTACTCGGAAGGGTTCCGAACCAAC 240
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 183 CCGTGGTTCCGTATTCCATGATCTCTATGGTTCAATTACTCGGCAGGGTTCCGAACCAAC 242
Query 241 ACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGGGCTCTTAAGC 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 ACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGTGCTCTTAAGC 302
Query 301 TTTCTAAACCAGGATGTGCGGTTCTTGGTGTCGGTTTTACGGGAACATTAGCAACTTCTC 360
||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 303 TTTCTAAGCCAGGATGTGCGGTTCTTGGTGTTGGTTTTACTGGAACGTTAGCAACTTCTC 362
Query 361 GTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCATCCGACCGGGTATGGG 420
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 363 GTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCTTCCAACCGGATATGGG 422
Query 421 AAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAA 482
Query 481 GCTGTGTACTGATACAGGCTATGGCCAAAGCATGCCAAGTTTCTGAGACCCTTGACTCTG 540
||| ||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 483 GCTCTGTACTGATTCAGGCTATGGCTAAGGCATGCCAAGTTTCTGAGACACTTGACTCTG 542
Query 541 GCTTGACTGAGTCTGAGGTGCTTAATGAGTCTGAAACCCAGTTTAGTGAAGAAGAAGAAC 600
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 543 GCTTGACTGATTCTGAGGTGCTTAATGAGTCTGTAATCCAGTTTAGTGAAGAAGAAGAAC 602
Query 601 TAGAGCAGCTTATAGATGGACAATTGTGCTCTAAGATTTATCCATTTTCTAAAGCAGAAT 660
|||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 603 TAGAACAGCTTATAGATGGACAAATATGCTCTAAGATCTATCCATTTTCTAAAGCAGAAT 662
Query 661 CATATGGATCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCGTTACATG 720
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 663 CATACGGGTCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCATTACATG 722
Query 721 AGGGTCATCTCAAGCTGTTGGAAGCTGCTCTGAGTGTTAGTGA--A-GGAGGGTACCCAT 777
| ||| ||||||||||||||||||||||| |||||||| ||| | |||||||| ||||
Sbjct 723 ACGGTGATCTCAAGCTGTTGGAAGCTGCTATGAGTGTTTCTGAGGAAGGAGGGTATCCAT 782
Query 778 GTTTTGAAATATCCGCAGTAAATGCAGACAAACCATCCCTTACAGTTGCAGAAATTAAAG 837
||||||||||||| ||| | ||||||||||||||||| ||||||||| |||| |||||||
Sbjct 783 GTTTTGAAATATCTGCACTGAATGCAGACAAACCATCGCTTACAGTTACAGAGATTAAAG 842
Query 838 ATCGCGTCAAGCAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCATTCT 897
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 843 ATCGTGTCAAACAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCTTTCT 902
Query 898 TTTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATCGGTGCTGACACTGCAG 957
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 903 TCTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATTGGTGCTGATACTGCAG 962
Query 958 CAAGGCTTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAG 1017
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAAGGATTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAG 1022
Query 1018 GTGACTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATGGTGAAT 1077
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1023 GTGATTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATAGTGTAT 1082
Query 1078 TTAAGGTTCTCGACGAT-ATTGACATTCCAGATGAAATAAGCAGTATGTTTACCTCAATT 1136
| |||||||| |||||| || || |||||| | |||||||| | |||||||||||||||
Sbjct 1083 TCAAGGTTCTTGACGATCAT-GAGATTCCAAAGGAAATAAGTACAATGTTTACCTCAATT 1141
Query 1137 CCAGCGGAAACATTCCGAATGGATATATCCTCTACTGAGCTAAGAAAGAACCGAGGAGAT 1196
|||| || |||||||| ||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 1142 TCAGCAGATACATTCCGTATGGATATATCCTCTACAGAGCTAAGAAAGAACCAAGGAGGT 1201
Query 1197 GTTATTTCATAATGCAGGAACTAGTGACTTGCAAAAAGAATATTGGCTTTT 1247
||||||||||||||||| || | |||| |||||||||||||||||||
Sbjct 1202 GTTATTTCATAATGCAG-AA---G---CTTGGAAAAAGAATATTGGCTTTT 1245
> AT2G01220.2 | Symbols: | Nucleotidylyl transferase superfamily
protein | chr2:123276-126466 FORWARD LENGTH=1445
Length=1445
Score = 1323 bits (716), Expect = 0.0
Identities = 1018/1164 (87%), Gaps = 19/1164 (2%)
Strand=Plus/Plus
Query 28 CGAGAGAAACAATGGCAGACTCTGCGATCCGAACCATCGTCGAATCAATTCACTCATCAC 87
||||||||||||||| |||| |||||||||| ||| |||||||| | ||||||||||| |
Sbjct 15 CGAGAGAAACAATGGGAGACGCTGCGATCCGTACCGTCGTCGAAGCCATTCACTCATCTC 74
Query 88 CGACGCAAGCCGTCGTGTATCTTTCCGGCGGTGCCTCTCAGTCTTTAGGTTGGTTAATGT 147
||||||| |||||||| ||||||| |||||||||||||| | ||||||||||||| ||||
Sbjct 75 CGACGCAGGCCGTCGTCTATCTTTGCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATGT 134
Query 148 CAGTTCCTGGAGCTTCGAACACACTTCTTGAAG-CCGTGGTTCCATATTCCATGA-TCTC 205
| ||||||||||| |||||||| ||||| | || |||||||||| ||||| | || | ||
Sbjct 135 CGGTTCCTGGAGCGTCGAACACGCTTCTCG-AGTCCGTGGTTCCTTATTCGA-GAGTATC 192
Query 206 TATGGTTCAATTACTCGGAAGGGTTCCGAACCAACACTGTAGCCAATCAATGGCGAATGA 265
|||||||||||||||||| |||||||||| |||||||||||||||| || |||| || ||
Sbjct 193 TATGGTTCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCATTGGCCAAGGA 252
Query 266 AATGGCTTTGTTAGCTTATAATCGGGCTCTTAAGCTTTCTAAACCAGGATGTGCGGTTCT 325
||||| |||||||| || |||||||| |||||||| ||||||||||||| | |||||||
Sbjct 253 GATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCT 312
Query 326 TGGTGTCGGTTTTACGGGAACATTAGCAACTTCTCGTCCAAAGCGTGGGGATCATAGGTT 385
|||||||| ||||||||| |||| | |||||||||||| |||||||| ||||| |||||
Sbjct 313 CGGTGTCGGGTTTACGGGATCATTGGTAACTTCTCGTCCTAAGCGTGGAGATCACAGGTT 372
Query 386 CTTTTTGTCGATAAGAGCATCCGACCGGGTATGGGAAACTTCAGTTACTCTAACAAAGGG 445
||||||||| || ||||||||||||||| | | |||| ||||||| |||||||| || |
Sbjct 373 CTTTTTGTCTATGAGAGCATCCGACCGGATTTTGGAATCTTCAGTCACTCTAACTAA--G 430
Query 446 AA--AACGAAGCCGAGAGGAAGAAGATAAAGTGGCAAGCTGTGTACTGATACAGGCTATG 503
|| ||| |||||||| ||||||||||| ||| ||||||||| |||||| |||||||||
Sbjct 431 AACTTACGGAGCCGAGAAGAAGAAGATAAGGTGTCAAGCTGTGCACTGATCCAGGCTATG 490
Query 504 GCCAAAGCATGCCAAGTTTCTGAGACCCTTGACTCTGGCTTGACTGAGTCTGAGGTG-CT 562
||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||
Sbjct 491 GCCAAGGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCT 550
Query 563 TAATGAGTCTGAAACCCAGTTTAGTGAAGAAGAAGAACTAGAGCAGCTTATAGATGGACA 622
| |||||||||||||||| |||| ||||||| |||||||||||||||||||| |||| ||
Sbjct 551 T-ATGAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGCA 609
Query 623 ATTGTGCTCTAAGATTTATCCATTTTCTAAAGCAGAATCATATGGATCGGATAAAGATAG 682
||||||| ||||||||||||||||||| | ||| || | || || ||| |||| ||
Sbjct 610 CTTGTGCTGTAAGATTTATCCATTTTCT---GGGGAAGCACACGGGTCTGATGAAGACAG 666
Query 683 AAAGATTATACTGCCTGGTTCTTTTAACCCGTTACATGAGGGTCATCTCAAGCTGTTGGA 742
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 667 AAAGATTATACTACCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTGTTAGA 726
Query 743 AGCTGCTCTGAGTGTTAGTGAAGGAGGGTACCCATGTTTTGAAATATCCGCAGTAAATGC 802
|| |||| |||||||| ||| || || |||||||||||||||||||||||| |||||||
Sbjct 727 AGTTGCTATGAGTGTTTGTGGGGGCGGCTACCCATGTTTTGAAATATCCGCAATAAATGC 786
Query 803 AGACAAACCATCC-CTTACAGTTGCAGAAATTAAAGATCGCGTCAAGCAATTTGAAGTAC 861
||||||||| || |||||| ||||| | ||||||||||| ||||||||||||||||||
Sbjct 787 CGACAAACCA-CCGCTTACAATTGCACAGATTAAAGATCGTGTCAAGCAATTTGAAGTAG 845
Query 862 TTGAAAAGACGGTAATAGTTTCAAATCAGCCATTCTTTTACAAGAAAGCTGAACTCTTCC 921
||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 846 TTGGAAAGACGATAATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTCTTCC 905
Query 922 CAGGAAGCAGTTTTGTAATCGGTGCTGACACTGCAGCAAGGCTTGTTAATCCAAAGTACT 981
||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct 906 CAGGAAGCAGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCAATCCAAAGTACT 965
Query 982 ATGAAGGAAGCCA-CAAAAGGATGTTGGAGGTACTAGGTGACTGCAAACGAACAGGTTGC 1040
||||||||||| | |||||||||||||||| |||| ||||| |||||||| |||||||||
Sbjct 966 ATGAAGGAAGC-ATCAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGTTGC 1024
Query 1041 AAGTTCCTTGTTGGTGGCCGTAATGTAGATGGTGAATTTAAGGTTCTCGACGATATTGAC 1100
| ||||||||||||||||| ||||||||||||| |||||||||||| || ||| ||||
Sbjct 1025 ACTTTCCTTGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATGTTGAT 1084
Query 1101 ATTCCAGATGAAATAAGC-AGTATGTTTACCTCAATTCCAGCGGAAACATTCCGAATGGA 1159
|||||||| ||||||| | | ||||||| ||||||||||| || | |||||| |||||
Sbjct 1085 ATTCCAGAGGAAATAATCGAC-ATGTTTATTTCAATTCCAGCAGATATATTCCGGATGGA 1143
Query 1160 TATATCCTCTACTGAGCTAAGAAA 1183
|||||||||||| ||| |||||||
Sbjct 1144 TATATCCTCTACAGAGATAAGAAA 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61294865445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5