BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484553
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27650.1 | Symbols: LBD25 | LOB domain-containing protein 25... 891 0.0
> AT3G27650.1 | Symbols: LBD25 | LOB domain-containing protein
25 | chr3:10238546-10240611 FORWARD LENGTH=930
Length=930
Score = 891 bits (482), Expect = 0.0
Identities = 653/729 (90%), Gaps = 37/729 (5%)
Strand=Plus/Plus
Query 5 AAACAAGATCAAACCTTTTCAAGAAGTTATCAAGTAGGGGACCTTTTCTTGTTAC--TCC 62
||| ||||||||||||| |||||||||||||||| | ||||||||||||||| | |||
Sbjct 203 AAAGAAGATCAAACCTTCTCAAGAAGTTATCAAGGA-AGGACCTTTTCTTGTTGCGATCC 261
Query 63 ATTTAAAGGGGATATACAAGAAAAAATGTCAAACTACACAAACTCACCCTGTGCAGCATG 122
||||||||||||||| | ||||| ||||||||||||||||| |||||||||||
Sbjct 262 ATTTAAAGGGGATAT--------ATATGTCGAACTACACAAACTCACCGTGTGCAGCATG 313
Query 123 CAAATTCCTCCGGCGTAAATGCACGTCAGACTGCGTATTCGCACCCTATTTTCCGCCGGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CAAATTCCTCCGGCGTAAATGCACGTCAGACTGCGTATTCGCACCCTATTTTCCGCCGGA 373
Query 183 GGAACCTACAAAGTTTGCGAACGTCCACCGGATATTCGGGGCAAGTAATGTAAGCAAGAT 242
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 374 GGAACCTACAAAGTTTGCGAACGTCCACCGGATATTCGGGGCAAGCAATGTGAGCAAGAT 433
Query 243 CCTTCACGAAGTAGC-CCCGCATCAGCGGGAAGACGCTGTGAACTCGCTGGCTTACGAGG 301
||| |||||||| || ||| |||||||||||||| || || |||||||||||||||||||
Sbjct 434 CCTCCACGAAGTGGCTCCC-CATCAGCGGGAAGATGCGGTCAACTCGCTGGCTTACGAGG 492
Query 302 CAGAGGCACGACTTAATGATCCAGTGTATGGCTGCGTTGGGGCGATCTCGGTGCTCCAAA 361
| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 493 CGGAAGCACGACTTAAAGATCCAGTGTATGGCTGCGTTGGAGCGATCTCGGTGCTCCAAA 552
Query 362 GACAGGTCTTGAGGTTGCAAAGGGAACTAGAGGAGACAAATGCTGATCTCATGAGGTACG 421
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 553 GACAGGTCTTGAGGTTGCAAAGGGAACTCGAGGAGACAAATGCTGATCTCATGAGGTACG 612
Query 422 CTAGTTGTCTTGGTAGTGAAACGACGTCGGCTTATGGTGGTCGGAGGGGTTGACTGGTCA 481
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CTGGTTGTCTCGGTGGTGAAACGACGTCGGCTTATGGTGGTCGGAGGGGTTGACTGGTCA 672
Query 482 ACGGGAGTACGTTGATTAGTCATCATCACTCTTTGACAGAACTAGCGGCGGTGAAGTATA 541
||| || | |||||||||||||||||||||||||| | || ||||||||| ||||||||
Sbjct 673 ACG--AG-A-GTTGATTAGTCATCATCACTCTTTGAGAAAATTAGCGGCGGAGAAGTATA 728
Query 542 AAGAGAGAGAGGATGGTTGAT---ATG--A--TG------GTCGTATGTATATATGCCTA 588
||||||||||||||||||||| ||| | || |||||||||||||||| ||
Sbjct 729 AAGAGAGAGAGGATGGTTGATGTGATGGTAAGTGTTATTAGTCGTATGTATATATGTGTA 788
Query 589 --T--GGAGACATGCATGTATGCATCTTTATGTTTGTTTTCATGTATACACTTATGCGTA 644
| || |||||||||| ||| || ||||||||| |||||||||||| |||||||||||
Sbjct 789 AATATGGGGACATGCATGCATGTATATTTATGTTTATTTTCATGTATATACTTATGCGTA 848
Query 645 TGTGTAATTTAACTTGTAGTTTTCTTT-CATGGGAG-G-TCAAGAAATATTTTTGATGAT 701
|||||||||||||||||| |||| ||| |||||||| | ||||| |||||||||||||||
Sbjct 849 TGTGTAATTTAACTTGTAATTTTTTTTTCATGGGAGAGGTCAAGGAATATTTTTGATGAT 908
Query 702 GTTTAATAA 710
||| |||||
Sbjct 909 GTTGAATAA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5