BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484554
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27660.1 | Symbols: OLEO4, OLE3 | oleosin 4 | chr3:10243755-... 963 0.0
> AT3G27660.1 | Symbols: OLEO4, OLE3 | oleosin 4 | chr3:10243755-10245023
FORWARD LENGTH=874
Length=874
Score = 963 bits (521), Expect = 0.0
Identities = 632/682 (93%), Gaps = 22/682 (3%)
Strand=Plus/Plus
Query 1 TTTATATGTATGTTCTCTTAGACTTATCTCT-TATA-CCCC--T--TTTGTATGCTCTTA 54
|||||||||| |||||| ||||||||||||| |||| |||| | ||||| ||||||||
Sbjct 1 TTTATATGTACGTTCTCGTAGACTTATCTCTATATACCCCCTTTAATTTGTTTGCTCTTA 60
Query 55 GCCTTTGCTCTT-TAGTTTTAGATCATATCAATCGACATGGCGAATGTTGACCGTGATCG 113
|||||| || || |||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 61 GCCTTTACT-TTATAGTTTTATATCATATCAATCGACATGGCGAATGTGGATCGTGATCG 119
Query 114 GCGTGTGCATGTAGACCGTACTGACAAACGTGTTCATCTTCAGCCATCCTACGAAGATGA 173
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 120 GCGTGTGCATGTAGACCGTACTGACAAACGTGTTCA---TCAGCCAAACTACGAAGATGA 176
Query 174 TGTTGG-TTT--TGG---T---GGTTATGGTGCTGGTTCTGATTTTAAGAGTCGCGGCCC 224
||| || ||| ||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 177 TGTCGGTTTTGGTGGCTATGGCGGTTATGGTGCTGGTTCTGATTATAAGAGTCGCGGCCC 236
Query 225 CTCCACTAACCAAATCTTGGCACTTATAGCAGGAGTTCCCATTGGTGGCACACTGCTAAC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCCACTAACCAAATCTTGGCACTTATAGCAGGAGTTCCCATTGGTGGCACACTGCTAAC 296
Query 285 TCTAGCTGGGCTCACTCTAGCCGGCTCGGTGATCGGCTTGCTAGTCTCCATACCCCTCTT 344
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 CCTAGCTGGACTCACTCTAGCCGGTTCGGTGATCGGCTTGCTAGTCTCCATACCCCTCTT 356
Query 345 CCTCCTCTTCAGTCCGGTCATTGTCCCGGCGGCTCTCACAATCGGGCTTGCTGTGACGGG 404
|||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 357 CCTCCTCTTCAGTCCGGTGATAGTCCCGGCGGCTCTCACTATTGGGCTTGCTGTGACGGG 416
Query 405 AATCTTGGCTTCTGGGTTGTTTGGGCTGACGGGTCTGAGCTCGGTCTCGTGGGTCCTTAA 464
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 417 AATCTTGGCTTCTGGTTTGTTTGGGTTGACGGGTCTGAGCTCGGTCTCGTGGGTCCTCAA 476
Query 465 CTACCTCCGTGGGACAAGTGATACAGTGCCAGAGCAATTGGACTATGCTAAGCGGCGTAT 524
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 477 CTACCTCCGTGGGACGAGTGATACAGTGCCAGAGCAATTGGACTACGCTAAACGGCGTAT 536
Query 525 GGCTGATGCGGTAGGCTATGCTGGTATGAAGGGAAAAGAGATGGGCCAGTATGTGCAAGA 584
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 GGCTGATGCGGTAGGCTATGCTGGTATGAAGGGAAAAGAGATGGGTCAGTATGTGCAAGA 596
Query 585 TAAGGCTCATGAGGCCCGTGAGACTGAGTTCACAACTGAGACCCATGAGCCGGGTAAGGC 644
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 TAAGGCTCATGAGGCTCGTGAGACTGAGTTCATGACTGAGACCCATGAGCCGGGTAAGGC 656
Query 645 CAGGAG-G-CTCATAAGCTAAT 664
|||||| | |||||||||||||
Sbjct 657 CAGGAGAGGCTCATAAGCTAAT 678
Score = 62.1 bits (33), Expect = 7e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 665 TTTTACTTTTATGTCCCAGTTTCTTTCCTCTTT 697
|||||||||||||||||||||||||||||||||
Sbjct 718 TTTTACTTTTATGTCCCAGTTTCTTTCCTCTTT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5