BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484560
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27720.1 | Symbols: ARI4, ATARI4 | IBR domain containing pro... 1580 0.0
AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily pr... 1303 0.0
> AT3G27720.1 | Symbols: ARI4, ATARI4 | IBR domain containing protein
| chr3:10271876-10273621 FORWARD LENGTH=1482
Length=1482
Score = 1580 bits (855), Expect = 0.0
Identities = 1331/1547 (86%), Gaps = 88/1547 (6%)
Strand=Plus/Plus
Query 1 ATGGATGACGAATATATGAGCTTCGAGGAGGAGGAAGACGATTATTGTTGCTCCTCCG-A 59
||||||||||||||||||||| |||||||||||| | | ||| |||||| | |||| | |
Sbjct 1 ATGGATGACGAATATATGAGCCTCGAGGAGGAGG-A-A-GATAATTGTTACCCCTCTGAA 57
Query 60 --TGATCATGATGATGAGGA-GTATAACAACGCGGAAGAATCCGTTTTGCAACAAC-CAA 115
|||| || ||||| | || || | |||||||||||| |||| |||||||| || | |
Sbjct 58 TTTGATGATCATGATCA-GATGTGTTCCAACGCGGAAGAGTCCGATTTGCAAC-ACTCGA 115
Query 116 GAGAACCTACGAGCCAGAAGGAAGTTATGGTTAGGGTTATGGAATTGTTATCGGTTAAGG 175
||||||| ||||||| | | ||||||| | || || |||||||||| ||
Sbjct 116 GAGAACCAACGAGCC---A-G--GTTATGG--A-----AT----TT-TTATCGGTTACGG 157
Query 176 AGAACCAAGCGAGGACTCTTCTTATTCATTATCAATGGAACGTTGATAAGTTGTTTTCTG 235
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 158 AGAACCAAGCAAGGACTCTTCTTATTCAGTATCAATGGAACGTTGATAAGTTGTTTTCTG 217
Query 236 TGTATATTGATCAAGGCAAAGATCTTTTGTTTTCTTGTGCTGGTCTTACTGTTTTTGACC 295
|||||| |||||||||||||||| ||||||| ||| ||||| | | | ||
Sbjct 218 TGTATACTGATCAAGGCAAAGATGTTTTGTTCTCTCGTGCT-G----A--G-----GA-- 263
Query 296 CTTCCTTAGTTAAGTCgaagaggaa-gaagaagaagaagaaggagaagacgaggaagagg 354
|| ||| ||||| || ||||| ||||||| ||||||||||||||||||||
Sbjct 264 ----AGAAG--AAGGAGAAGA-CAAGGAAGAGGAAGAAGGAGGAGAAGACGAGGAAGAGG 316
Query 355 aagaagaaggagaagaagggggaggagg-ag-acgaggaagaggaagaaggCaaaaaaaa 412
|||||| |||||||| | | ||| | || || | |||| ||| || | ||| || ||
Sbjct 317 AAGAAGGAGGAGAAG-ACGAGGAAGCGGAAGAAGGAGG-AGAAGACG-AGG-AAGCGGAA 372
Query 413 CGATGAAGTGTG-ATATCTGCATGGAAGAGGATTTA-TC-AAAATATGCCACGACAAGAA 469
|| | ||| || | | | | | ||||||||| | | |||| | | ||| | | |
Sbjct 373 -GAAGGAGT-TGAAGA-C-G-A-GGAAGAGGAAGAAGACGAAAA-A-G--ACG--ATG-A 419
Query 470 TAGAGCAACTAGTTAGCCCGGAGTTAGCTGAGAAGTTTGATCGTTTCCTCGTTGAGTCAT 529
|| ||||||||||||| ||||||||||||||||||||||||||||||| |||| || |
Sbjct 420 -AGTGCAACTAGTTAGCACGGAGTTAGCTGAGAAGTTTGATCGTTTCCTTATTGAATCTT 478
Query 530 ACGTAGAAGATAACAATATGGTGAAGTGGTGTCCAAGCACACCACATTGCGGGAATGCGA 589
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 ATGTGGAAGATAACAATATGGTGAAGTGGTGTCCAAGCACACCGCATTGCGGGAATGCGA 538
Query 590 TACGAAAAATCAAAGATGATAGCGA---TGACGAGGTGGAATGTTCATGTGGACTTCAGT 646
||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 539 TACGAAATATCAAAGATGATGGCGATGTTGATGAGGTGGAATGTTCATGTGGACTTCAGT 598
Query 647 TCTGTTTCAGTTGTCTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 706
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTGTTTCAGTTGTTTAAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTAT 658
Query 707 GGAAAAAGAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGC 766
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAAAAAGAAATGTGAAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGC 718
Query 767 TGTGTCCCAAATGTAGCAAACCTATTCAAAAGAGAGACGGTTGCAATCACATGACTTGTA 826
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 TGTGTCCCAAATGTAGCAAACCTATTCAAAAGAGAGATGGTTGCAATCACATGACTTGTA 778
Query 827 AGTGTGGTCAGtttttttGCTGGCTGTGTGGTCAAGCTACTGGA-GCAGAACATAGTT-T 884
||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 779 AGTGTGGGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACTGGAAG-AGATCATTCTTAT 837
Query 885 TAGGAGTATCGCTGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAAATGGA 944
| | ||||| || |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 838 TCG-AGTATTGCCGGTCATAGTTGTGGTCGGTACAAAGAAGAAAAAGTGAGGCAATTGGA 896
Query 945 GAGAGCCAAAAGGGATTTAGACAGGTACACACATTACCATTACCGATACAAAGTGCACAC 1004
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| || |
Sbjct 897 GAGAGCCCAAAGGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCACATAT 956
Query 1005 CGATTCATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCTGAAGAAGGCACTGTTAAA 1064
||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 957 CGATTCATTAAAGCTAGAGGACAAACTTAAGAAGAGTATCCTGAAGAAGGCAGTGTTAAA 1016
Query 1065 TTCTGAAACCAAGGATCAAGAAGA-GTTTAAAGAATACAGTTGGGTTACAGATGCAGTCA 1123
||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||
Sbjct 1017 TTCTGAAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGTTGGATTATAGATGCAGTCA 1075
Query 1124 ACCGGTTATTCAGATCACGACGGATTCTTTCGTATTCGTATCCTTTCGCGTTCTACATGT 1183
||||||||||||||||| || | |||||||||||||| |||||||||| |||||||||||
Sbjct 1076 ACCGGTTATTCAGATCAAGAAGAATTCTTTCGTATTCTTATCCTTTCGTGTTCTACATGT 1135
Query 1184 TTGGCGAAGAGTTGTTCAAAGATGAGATGAGCGATGAAGAGAGAGATATAAAGAAGAATC 1243
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1136 TTGGCAAAGAGTTGTTCAAAGATGATATGAGCGATGAAGAGAGAAATATAAAGAAGAATC 1195
Query 1244 TGTTTGAAGATCAGCAGCAACAACTTGAAGGTAATATTGAGAAACTTTCCAAGATTTTAG 1303
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 1196 TGTTTGAAGATCAGCAGCAACAACTTGAAGGTAATGTTGAGAGACTTTCCAAGATATTAG 1255
Query 1304 AAGAGCCTTTTGATGAGTATGGTCATGAGGAAGTAATA-ATTATGAAGAGTCAACTAATC 1362
||||||||||||||||||||| |||||| |||| | | |||| ||| || || | |
Sbjct 1256 AAGAGCCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAG-ATGATGAGACACCTCACC 1314
Query 1363 AAGATGTGTGCTATGGTTGATACAC-TATGCAAGAAAATGTATGAGTGCATTGAAAATGA 1421
|| || |||| ||||||||| || | |||||| ||||||||||||||||||| |||||
Sbjct 1315 AATTTGACTGCTGTGGTTGATA-ACCTCTGCAAGGAAATGTATGAGTGCATTGAGAATGA 1373
Query 1422 CTTATTAGGTCCACTCGA-ATCTGGAATCCACAACATTGCACCTTACAGATCAATGGGAA 1480
||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1374 GTTATTAGGTCCACTC-ATATCTGGAATCCACAACATTGCACCTTACAGATCAAAGGGAA 1432
Query 1481 TAGAACAAGCTGCTAAATTTTCTGCTTCTTCGGCTTGTAGTTCAAGC 1527
|||||||||||||| | |||||||||||||| |||||| ||||||||
Sbjct 1433 TAGAACAAGCTGCTGAGTTTTCTGCTTCTTCCGCTTGTGGTTCAAGC 1479
> AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily
protein | chr3:10269206-10271065 FORWARD LENGTH=1860
Length=1860
Score = 1303 bits (705), Expect = 0.0
Identities = 959/1080 (89%), Gaps = 24/1080 (2%)
Strand=Plus/Plus
Query 478 CTAGTTAGCCCGGAGTTAGCTGAGAAGTTTGATCGTTTCCTCGTTGAGTCATACGTAGAA 537
|||||||| || || |||||||| | || |||||||||||| |||| || || || |||
Sbjct 645 CTAGTTAGTCCTGAATTAGCTGACAGGTATGATCGTTTCCTTATTGAATCTTATGTGGAA 704
Query 538 GATAACAATATGGTGAAGTGGTGTCCAAGCACACCACATTGCGGGAATGCGATACGAAAA 597
||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| |||
Sbjct 705 GATAACAATATGGTGAAGTGGTGTCCAAGTAAACCGCATTGCGGGAGTGCGATACGGAAA 764
Query 598 ATCAAAGATGAT-A-G-CGAT-GACGAGG-TGGAATGTTCATGTGGACTTCAGTTCTGTT 652
||| |||||| | | | || | | |||| ||| ||||||||||||||||||||||||||
Sbjct 765 ATCGAAGATGGTCATGACG-TCGTTGAGGTTGG-ATGTTCATGTGGACTTCAGTTCTGTT 822
Query 653 TCAGTTGTCTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAA 712
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TCAGTTGTTTGAGTGAGTCTCACTCTCCTTGCTCTTGTTTGATGTGGAAGCTATGGAAAA 882
Query 713 AGAAGTGTGTAGACGAGTCTGAGACGGTTAATTGGATGACCGTTAACACGAAGCTGTGTC 772
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 883 AGAAGTGTGAAGACGAGTCTGAGACGGTTAATTGGATAACCGTTAACACAAAGCTGTGTC 942
Query 773 CCAAATGTAGCAAACCTATTCAAAAGAGAGACGGTTGCAATCACATGACTTGTAAGTGTG 832
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 943 CCAAATGTAGCAAACCTATTCAAAAGAGAGACGGTTGCAATCTCATGACTTGTAAGTGTG 1002
Query 833 GTCAGtttttttGCTGGCTGTGTGGTCAAGCTACTGGA-GCAGAACATAGTTTTAGGAGT 891
| ||| ||||||||||||||||||||||||||||||| | ||| |||| || || |||
Sbjct 1003 GGCAGCATTTTTGCTGGCTGTGTGGTCAAGCTACTGGAAG-AGATCATACTTATACTAGT 1061
Query 892 ATCGCTGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAAATGGAGAGAGC- 950
|| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1062 ATTGCCGGTCATAGTTGTGGTCGGTACAAAGATGAAAAAGTGAGGCAATTGGAGAGAGCT 1121
Query 951 CAAAAGGGATTTAGACAGGTACACACATTACCATTACCGATACAAAGTGCACACCGATTC 1010
|||| |||||||||||||||| ||||||||||||||||| ||||||| || | ||||||
Sbjct 1122 CAAA-GGGATTTAGACAGGTATACACATTACCATTACCGCTACAAAGCACATATCGATTC 1180
Query 1011 ATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCT-GAAGAAGGCACTGTTAAATTCTG 1069
|||||||||||||||||||||||||||||||||||| || ||||||| | | ||||||||
Sbjct 1181 ATTAAAGCTAGAGGATAAACTTAGGAAGAGTATCCTTGA-GAAGGCAGTATCAAATTCTG 1239
Query 1070 AAACCAAGGATCAAGAAGA-GTTTAAAGAATACAGTTGGGTTACAGATGCAGTCAACCGG 1128
|||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1240 AAACCAAGGATCAA-AAGGTGTTTAAAGAATACAGCTGGGTTACAGATGCAGTCAACCGG 1298
Query 1129 TTATTCAGATCACGACGGATTCTTTCGTATTCGTATCCTTTCGCGTTCTACATGTTTGGC 1188
||||||| ||| || |||||||||||| | |||||||||||||||||||| ||||| ||
Sbjct 1299 TTATTCATATCGCGGCGGATTCTTTCGCAATCGTATCCTTTCGCGTTCTATATGTTCGGT 1358
Query 1189 GAAGAGTTGTTCAAAGATGAGATGAGCGATGAAGAGAGAGATATAAAGAAGAATCTGTTT 1248
|||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 1359 GAAGAGCTGTTCAAAGATGAGATGAGTGAAAAAGAGAGAGAGATAAAGAAGAATCTGTTT 1418
Query 1249 GAAGATCAGCAGCAACAACTTGAAGGTAATATTGAGAAACTTTCCAAGATTTTAGAAGAG 1308
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1419 GAAGATCAGCAGCAGCAACTTGAAGGTAATGTTGAGAAACTTTCCAAGATTTTAGAAGAG 1478
Query 1309 CCTTTTGATGAGTATGGTCATGAGGAAGTAATA-ATTATGAAGAGTCAACTAATCAAGAT 1367
|||||||||||||||| |||||| |||| | | |||| ||| || || | ||| |
Sbjct 1479 CCTTTTGATGAGTATGATCATGAAAAAGTTGTGGAG-ATGATGAGACACCTCACCAATTT 1537
Query 1368 GTGTGCTATGGTTGATACAC-TATGCAAGAAAATGTATGAGTGCATTGAAAATGACTTAT 1426
| |||| ||||||||| || | |||||| ||||||||||||||||||| ||||| ||||
Sbjct 1538 GACTGCTGTGGTTGATA-ACCTCTGCAAGGAAATGTATGAGTGCATTGAGAATGAGTTAT 1596
Query 1427 TAGGTCCACT-CGAATCTGGAATCCACAACATTGCACCTTACAGATCAATGGGAATAGAA 1485
|||||||| | | ||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1597 TAGGTCCAATAC-AATTTGGAAACCACAACATTGCACCTTACAGATCAAAGGGAATAGAA 1655
Query 1486 CAAGCTGCTAAATTTTCTGCT---TCTTCGGCTTGTAGTTCAAGCGGATCTTCGTCGAAT 1542
||||| || | |||| |||| ||||| | |||| |||||||||||||||||| ||||
Sbjct 1656 CAAGCAACTGAGTTTTGTGCTGAATCTTCTGATTGTGGTTCAAGCGGATCTTCGTAGAAT 1715
Score = 241 bits (130), Expect = 2e-62
Identities = 171/191 (90%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 127 AGC-CAGAAGGAAGTTATGGTTAGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGC 185
||| || || ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGCACAAAAAGAAATTCTGGTTAGGGTTATGGAATTGTTATCGGTTAAGGAGAACCAAGC 316
Query 186 GAGGACTCTTCTTATTCATTATCAATGGAACGTTGATAAGTTGTTTTCTGTGTATATTGA 245
||||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||
Sbjct 317 TAGGACTCTTCTTATTTATTACCAATGGAACGTTGAGAAGTTGTTCTCTGTGTTTGCTGA 376
Query 246 TCAAGGCAAAGATCTTTTGTTTTCTTGTGCTGGTCTTACTGTTTTTGACCCTTCCTTAGT 305
|||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 377 TCAAGGCAAAGATCGTATGTTTTCTTGTGCTGGTCTTACTGTTTTTGTTCCTTCTTTAGT 436
Query 306 TAAGTCgaaga 316
|| |||||||
Sbjct 437 TACTTCGAAGA 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5