BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484564
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27740.1 | Symbols: CARA | carbamoyl phosphate synthetase A ... 2438 0.0
> AT3G27740.1 | Symbols: CARA | carbamoyl phosphate synthetase
A | chr3:10281261-10283866 REVERSE LENGTH=1576
Length=1576
Score = 2438 bits (1320), Expect = 0.0
Identities = 1481/1558 (95%), Gaps = 13/1558 (1%)
Strand=Plus/Plus
Query 1 TAAAAAACCTTGACGCCGTTttcttcttcgttcttcttcttcCTCCTGAGAAAACAACAT 60
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 17 TAAAAAACCTTGACGCCGTTTTCTTCTTCGATCTTCTTCTTCCTCCAGAGAAAACAACAT 76
Query 61 GGCCATGGCAACAAGGACTCTAGGCTTTGTTTTGCCTACGAGCTTATCTTCCCAGCCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GGCCATGGCAACAAGGACTCTAGGCTTTGTTTTGCCTACGAGCTTATCTTCCCAGCCTTC 136
Query 121 CTTCGACCGTCGCGGCGGTGGATTTAGGGTTTCGGTCATCCGATGCTCCACTTCTCCACT 180
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 137 CTTCGACCGTCGCGGCGGTGGATTTAGGGTTTCTGTCATCCGTTGCTCCACTTCTCCACT 196
Query 181 CACTTTTCCCACTTCTGGTGTTGTGGAGAAACCTTGGACTTCGTACAATGCTAGGCTTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CACTTTTCCCACTTCTGGTGTTGTGGAGAAACCTTGGACTTCGTACAATGCTAGGCTTGT 256
Query 241 GTTAGAAGATGGTTCTATCTGGCCGGCTAAGTCCTTTGGTGCTCCTGGAACTCGTATTGC 300
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 257 GTTAGAAGATGGTTCTATCTGGCCTGCTAAGTCTTTTGGTGCTCCTGGAACCCGTATTGC 316
Query 301 CGAATTGGTGTTTAACACTTCCTTGACAGGGTATCAAGAAATTCTT-ACTGATCCTAGTT 359
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 317 TGAATTGGTGTTTAACACTTCCTTGACAGGGTATCAAGAAATT-TTAACTGATCCTAGTT 375
Query 360 ATGCTGGGCAATTTGTGCTAATGACAAACCCACAAATTGGTAACACTGGTGTCAATCCCG 419
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 376 ATGCTGGGCAGTTTGTGCTAATGACAAACCCACAAATTGGTAATACTGGTGTCAATCCTG 435
Query 420 ATGATGAAGAGTCTGGGCAATGCTTTCTTACTGGTTTGGTGATAAGAAATCTAAGCATCA 479
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 436 ATGATGAAGAATCTGGGCAATGCTTTCTTACTGGTTTGGTGATAAGAAACCTAAGCATTA 495
Query 480 GTACCTCAAACTGGAGATGCACGAAAACACTTGCTGACTATCTAACCGAAAGGAACATCA 539
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 496 GTACCTCAAACTGGAGATGCACGAAGACACTTGCTGATTATCTAACCGAAAGGGACATCA 555
Query 540 TGGGAGTTTATGATCTTGACACTCGAGCAGTAACCCGTCGGTTAAGAGAAGATGGTAGTC 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 556 TGGGAGTTTATGATCTTGACACTCGAGCAATAACCCGTCGGTTAAGAGAAGATGGTAGTC 615
Query 600 TTATCGGAGTGTTGAGCACAGAACAGTCCAAAACAGATGACGAACTTCTGCAAATGTCTT 659
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 616 TTATCGGGGTGTTGAGCACAGAACAGTCCAAAACAGATGATGAACTTCTGCAAATGTCTC 675
Query 660 GTTCATGGGACATCGTAGGTATTGATCTAATAAGTGGCGTATCATGTAAATCTCCTTATG 719
|||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 676 GTTCATGGGATATCGTAGGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATG 735
Query 720 AATGGGTTGACAAAACAAACCCTGAATGGGATTTCAACACGAATTCACGCGATGGGAAAT 779
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 736 AATGGGTTGACAAAACAAACGCTGAATGGGATTTCAACACGAATTCACGAGATGGGAAAT 795
Query 780 CCTACAAAGTTATCGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTATCAT 839
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 796 CCTACAAAGTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTTTCAT 855
Query 840 CTTACGGATGTCAAATCACTGTTGTTCCGTCGACATGGCCAGCTTCCGAGGCACTGAAAA 899
||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||
Sbjct 856 CTTACGGATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCGAGGCGCTGAAAA 915
Query 900 TGAATCCAGATGGGATTTTGTTCAGCAACGGTCCTGGAGACCCTTCTGCTGTGCCATATG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TGAATCCAGATGGGATTTTGTTCAGCAACGGTCCTGGAGACCCTTCTGCTGTGCCATATG 975
Query 960 CTGTTGAGACAGTTAAAGAGCTTCTCGGTAAAGTCCCTGTTTACGGAATCTGTATGGGTC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 976 CTGTTGAGACAGTTAAAGAGCTTCTCGGTAAAGTCCCTGTTTACGGAATCTGTATGGGCC 1035
Query 1020 ATCAGTTGCTCGGCCAAGCTTTGGGTGGTAAAACCTTCAAGATGAAGTTTGGTCATCATG 1079
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1036 ATCAGTTGCTTGGTCAAGCTTTGGGGGGTAAAACCTTCAAGATGAAGTTTGGTCATCATG 1095
Query 1080 GAGGAAACCACCCAGTTCGTAACAACAGAACTGGCCAGGTGGAGATCAGTGCTCAGAACC 1139
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1096 GAGGAAACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGAATC 1155
Query 1140 ACAACTACGCGGTTGACCCGGCTTCACTTCCCGGAGGCGTAGAAGTAACTCATGTCAATC 1199
||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1156 ACAACTATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTAACACATGTCAATC 1215
Query 1200 TGAATGATGGAAGCTGTGCGGGTCTATCTTTCCCGGAAATGAATGTCATGTCTCTCCAAT 1259
| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1216 TCAATGATGGAAGCTGTGCGGGTCTATCTTTCCCGGAAATGAATGTTATGTCACTCCAGT 1275
Query 1260 ACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGCATTTAGAGAGTTCATAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 ACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGCATTTAGAGAGTTCATAG 1335
Query 1320 AGCTTATGAAGAGATCGAAACAAAGCTCCTGATCAATGAGAAGTACTCTTTGTTTT-GTA 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1336 AGCTTATGAAGAGATCGAAACAAAGCTCCTGATCAATGAGAAGTACTCTTTGTTTTTGTA 1395
Query 1379 CTATTTGCTGTTTTAAATCGTGGCACTTAAATTAAGACCAAACTGTTTTGTTAGTGACAA 1438
| || |||||||| |||| ||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 1396 CG-TT-GCTGTTTTTAATCATGGCACTTAAATTAAAACCAA-CTGTTTTGTTAGTGATAA 1452
Query 1439 TGGAGTGGCATTATTGTTT-TC-GCTTTGTCTGTATTAAGGAACCATCCCACCTATAAAA 1496
|||| |||||||||||||| | |||||| ||||||| || |||||||| ||||||||||
Sbjct 1453 TGGATTGGCATTATTGTTTCTTTGCTTTGACTGTATTGAGCAACCATCCAACCTATAAAA 1512
Query 1497 TAA-TCAAGAATTTGTAAAAGTAATaaaaagaaaaaaaaaTGATGTGAGAGTTTGTGT 1553
||| | |||| ||||||||||||||||| ||| ||| | |||||||||||||||||
Sbjct 1513 TAAGT-AAGATTTTGTAAAAGTAATAAAGAGATAAAGA---GATGTGAGAGTTTGTGT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5