BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484568
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27785.1 | Symbols: MYB118, ATMYB118, PGA37 | myb domain pro... 2073 0.0
AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64 |... 128 2e-28
> AT3G27785.1 | Symbols: MYB118, ATMYB118, PGA37 | myb domain protein
118 | chr3:10288603-10290934 REVERSE LENGTH=1700
Length=1700
Score = 2073 bits (1122), Expect = 0.0
Identities = 1367/1480 (92%), Gaps = 37/1480 (3%)
Strand=Plus/Plus
Query 87 ATCGTATGGAGTTCGAGTCAGTGATCAAAATGCATTATCCGTATCTCGCAGCCGTTATGT 146
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 218 ATCATATGGAGTTCGAGTCAGTGTTCAAAATGCATTATCCGTATCTCGCAGCCGTTATCT 277
Query 147 ACGATGATAGCCT-CGCTTTAAAAGATTTTCATCCATCTCTTACCGATGATTTTTCTTGT 205
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ACGATGATAG-CTCCACTTTAAAAGATTTTCATCCATCTCTTACCGATGATTTTTCTTGT 336
Query 206 GTACACAATGTACATCATAAACCCTCGATACCTCACACAAATGAAATACCTTCAAAAGAA 265
||||||||||| ||||| ||||| ||||| ||||||||| |||||||||| |||||||||
Sbjct 337 GTACACAATGTGCATCACAAACCATCGATGCCTCACACATATGAAATACCATCAAAAGAA 396
Query 266 ACCATTAGGGGCATCACTCCTTCTCCATGCACTGAAGCTTTCGAGGCATATTTTCATGGC 325
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 397 ACCATTAGGGGCATCACTCCTTCTCCATGCACTGAAGCTTTCGAGGCATGTTTTCATGGC 456
Query 326 ACATCCAACGACCAAGGGTTTTTTGGCATGGCCTATACCACCTCACCAACTATTGATGAA 385
|||||||||||||| | |||||||||||||||||||||||| ||||||||| | ||||
Sbjct 457 ACATCCAACGACCATGTTTTTTTTGGCATGGCCTATACCACCCCACCAACTA-T--TGAA 513
Query 386 TCTAACGTTTCACATGTCCCACATGACAATACTATGTGGGAAAATGATCAAAGCCAAGGA 445
| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 514 CCCAACGTTTCACATGTCTCACATGACAATACTATGTGGGAAAACGATCAAAACCAAGGA 573
Query 446 TCCGTCTTTGGGACCGAGTCAACCTTCAATCTAGCCATGGTGGA--C---TC---T-AA- 495
| | ||||||| |||||||||||| |||||| |||||||| ||| | || | ||
Sbjct 574 TTCATCTTTGGAACCGAGTCAACCCTCAATCAAGCCATGGCGGACTCTAATCAATTCAAT 633
Query 496 A--CC---A--A-TCTTGAGCGCAAATGAAGATACCATCATGAATCGACGTCAAAATAAT 547
| || | | ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 634 ATGCCAAAACCACTCTTGAGCGCAAACGAAGACACCATCATGAATCGACGTCAAAATAAC 693
Query 548 CAGGTAATGATCAGGACCGAGCAGATCTTGAAGAAGAACAAGAGATTGCAGATGAGGAGG 607
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 694 CAGGTAATGATCAAGACCGAGCAGATCAAGAAGAAGAACAAGAGATTTCAGATGAGGAGG 753
Query 608 ATATGTAAACCCGCGAAAAAAGCTAGCATCATCAAAGGACAATGGACTCCTGAAGAAGAC 667
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 ATATGTAAACCCACAAAAAAAGCTAGCATCATCAAAGGACAATGGACTCCTGAAGAAGAC 813
Query 668 AAGTTATTGGTGCAATTAGTGGAACTTCATGGAACTAAAAAATGGTCTCAAATTGCTAAA 727
|||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 814 AAGTTATTGGTGCAGCTAGTGGACCTTCACGGAACTAAAAAATGGTCTCAGATTGCTAAG 873
Query 728 ATGCTTCAAGGAAGAGTTGGAAAACAGTGCAGAGAAAGGTGGCATAACCATCTCCGTCCC 787
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGCTTCAAGGACGAGTTGGAAAACAGTGCAGAGAAAGGTGGCATAACCATCTCCGTCCC 933
Query 788 GATATCAAGAAAGATGTATGGACTGAAGAAGAGGATATGATACTGATAAAAGCCCACAAG 847
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 934 GATATCAAGAAAGATGGATGGACTGAAGAAGAGGATATAATACTGATAAAAGCCCATAAG 993
Query 848 GAGATTGGGAATAGATGGGCTGAGATTGCTCGAAATCTCCCGGGACGCACCGAAAATACG 907
||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 994 GAGATTGGGAACAGATGGGCTGAGATAGCTCGAAAACTCCCGGGACGCACTGAAAATACG 1053
Query 908 ATCAAGAACCATTGGAATGCGACAAAACGTCGACAACACTCGAGGAGAACTAAAGGAAAA 967
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1054 ATCAAGAACCATTGGAACGCGACTAAACGTCGACAACACTCGAGGAGGACTAAAGGAAAA 1113
Query 968 GATGAAATCTCCCTTGCACTTGGTAGCAACACTCTTCAGAACTACATTAGGTCTGTTACT 1027
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GATGAAATTTCCCTTTCACTTGGTAGCAACACTCTTCAGAACTACATTAGGTCTGTTACC 1173
Query 1028 TACAACGAAGATACC-TTCATGACCGCAAACT-CAAACGCAAACATTGGTCCAAAAAACA 1085
||||| || ||| || |||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 1174 TACAATGATGAT-CCTTTCATGACCGCAAA-TGCAAACGCAAACATTGGTCCAAGAAACA 1231
Query 1086 TGAGAGATAAAGGTAAGAATGTAATGGTTGCGGTCTCGAAGTATGAAGAGGATGAGTGTA 1145
|||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||
Sbjct 1232 TGAGAGGTAAAGGTAAGAATGTAATGGTTGCGGTCTCGGAGTATGATGAGGGTGAATGTA 1291
Query 1146 AGTATATTGTTGATGGTGTG-ATGAACTTGGGTTTAGACA-ATGGAAGGATCAAGATGCC 1203
|||||||||| ||||||||| || |||||||||||||| | |||||||||||||||||||
Sbjct 1292 AGTATATTGTGGATGGTGTGAAT-AACTTGGGTTTAGA-AGATGGAAGGATCAAGATGCC 1349
Query 1204 GTCATTGGCGGCTGTGTCAGCTGCCTCCGGATCAGCGTCTACTTCTGGTTCTGCGTCCGG 1263
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1350 GTCATTGGCGGCTATGTC-G--GCCTCCGGATCAGCGTCTACTTCTGGTTCTGCGTCTGG 1406
Query 1264 TTCTGGAAGTGGTGTGACCATGGAGCTTGATGAGCCGATGACTGATAGCTATATGGTGAT 1323
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1407 TTCTGGAAGTGGTGTGACCATGGAGATTGATGAGCCGATGACTGATAGCTGGATGGTGAT 1466
Query 1324 GCATGGATGTGATGAAGTTATGATGAACGAGATTGCTTTGCTGGAGATGATTGCTCATGG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GCATGGATGTGATGAAGTTATGATGAACGAGATTGCTTTGCTGGAGATGATTGCTCATGG 1526
Query 1384 TCGTCTTTAGGCCGTGCAATATAAACAAGTCGAACTTGATTATATCTACCTATATAATTA 1443
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TCGTCTTTAGACCGTGCAATATAAACAAGTCGAACTTGATTATATCTACCTATATAATTA 1586
Query 1444 TGTTATTTATGAAATTAAGTTTGTGCTTTTTCATTGAAGAATTGAATATGTAATATATAT 1503
|| |||||||||||||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct 1587 TGCTATTTATGAAATTATGTTTGTGCTTTTA-ATTGAAGAATTGGACATGTAATATATAT 1645
Query 1504 TGTGGTTTAATTGAAGGTTTCTATTGGAC-aaa-aaaaaT 1541
|||||||||||||||||||||| |||||| ||| ||||||
Sbjct 1646 TGTGGTTTAATTGAAGGTTTCTTTTGGACTAAACAAAAAT 1685
> AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64
| chr5:3502092-3503834 FORWARD LENGTH=1523
Length=1523
Score = 128 bits (69), Expect = 2e-28
Identities = 180/230 (78%), Gaps = 22/230 (10%)
Strand=Plus/Plus
Query 730 GCTTCAAGGAAGAGTTGGAAAACAGTG-CAGAGAAAGGTGGCATAACCATCTCCGTCCCG 788
|||| | ||||||| || || || || | | || || |||||||| ||||||||||| |
Sbjct 454 GCTTGAGGGAAGAGCAGGCAAGCAATGTC-GTGAGAGATGGCATAATCATCTCCGTCCTG 512
Query 789 ATATCAAGAAAGAT-GTATGGACTGAAGAAGAGGATATGA-TAC-TGATAAAAGC-C-CA 843
|||||||||||||| || |||| ||||||||| || | || | | || | |||| | ||
Sbjct 513 ATATCAAGAAAGATAGT-TGGAGTGAAGAAGAAGAGA-GACTTCTTG-TGGAAGCACACA 569
Query 844 CAAGGAGATTGGGAAT-AGATGGGCTGAGATTGCTCGAAA-TC-T-CCCGGGACGCACCG 899
| | || || |||||| || ||||| ||||| ||| ||| || | | ||| || ||||
Sbjct 570 CCA-GA-ATCGGGAATAAG-TGGGCAGAGATCGCT--AAACTCATACAAGGG-CGAACCG 623
Query 900 AAAA-TACGATCAAGAACCATTGGAATGCGACAAAACGTCGACAACACTC 948
|||| | ||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 624 AAAACT-CGATCAAGAACCATTGGAATGCGACAAAACGACGCCAAAACTC 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5