BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484572
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A... 1070 0.0
AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3... 691 0.0
> AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A
| chr3:10318505-10319432 FORWARD LENGTH=928
Length=928
Score = 1070 bits (579), Expect = 0.0
Identities = 722/787 (92%), Gaps = 26/787 (3%)
Strand=Plus/Plus
Query 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCTACTCT 60
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 71 AATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCATCTTATCCTACTCT 130
Query 61 CGCTTCCACCAACCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 120
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CGCTTCCATCAATCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 190
Query 121 TGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 180
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 250
Query 181 CGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTTACCCTCGAAGA 240
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 251 CGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCATCCCTAACCCTCGAAGA 310
Query 241 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGC 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 311 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCTTTAGC 370
Query 301 TCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTTGAAGA 360
|| || || ||||| || |||||||||||||||||||| |||||||||||||| || ||
Sbjct 371 CCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGA 430
Query 361 ACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGAT 420
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 431 GCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAAT 490
Query 421 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 491 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGG 550
Query 481 ATTGCCCaagaagtttaaagaaggtgtgactaaagatgaagctgaagaagctaagaagac 540
||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 551 ATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAGAAGAC 610
Query 541 tcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTT-ATAATAAAA------G 593
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 611 TCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTTATAAAAAAAAAAAAAG 670
Query 594 ---TTCTTCTCTTTTCTGGAAATT--TCGGGATCTTTTGTGTTGTTTAGTATAGTTTGCG 648
|| || |||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct 671 AAGTTGTTATCTTTTCTGGAATTTGATTGG--TCTTTTGTGTTGTTTAGTATAGTTTGCG 728
Query 649 TCTGGAATTGTTG-----T------AATTTGAATCACATTTGGTTTCCCATAAGCTGATT 697
||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 729 TCTGGAATTGTTGAGAAATTGTTGTAATTTGAATCACATTTGGTTTCCCATTAGCTGATT 788
Query 698 TTGCCATTGACATGAGCTTTT-GGTAGATGCACATAACATGTTTGTTGAAATGCCTAAAT 756
| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 789 TCGCCATTGATGTGAGCTTTTTGGTAGCTGCACATAACATGTTTGTTGAAATGCCTAAAT 848
Query 757 GAGACAA 763
||| |||
Sbjct 849 GAGGCAA 855
> AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3:10324839-10325713
FORWARD LENGTH=875
Length=875
Score = 691 bits (374), Expect = 0.0
Identities = 520/587 (89%), Gaps = 23/587 (4%)
Strand=Plus/Plus
Query 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCT-AC-T 58
|||||||||||||||||||||||||||||| ||||||||||| || ||| | || || |
Sbjct 66 AATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCT-CTCACTT 124
Query 59 CTCGCTTCCAC-CAACCACTTCCCTTCCCGAA-CCACCACCATCGAATTCCCCTCTCGCT 116
| ||||||||| | | ||||| |||| || || ||||| | ||||||||||| | |||
Sbjct 125 C-CGCTTCCACTC-ATCACTT-CCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG-- 179
Query 117 TCGGTGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCG 176
|| | || || |||| | | | ||||||||||| | | |||||||| ||| |||
Sbjct 180 TC--T-CAGC-TCTTCTT---C--T-AGCCACCGTGCAATCAACCTCCGTCCTATCTCCG 229
Query 177 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTC 235
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 230 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTC 288
Query 236 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCT 295
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 289 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCC 348
Query 296 TTAGCTCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTT 355
||||| || || || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct 349 TTAGCCCCCGCAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTG 408
Query 356 GAAGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 415
|| || || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 468
Query 416 GTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATT 475
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATC 528
Query 476 GAAGGATTGCCCaagaagtttaaagaaggtgtgactaaagatgaagctgaagaagctaag 535
|||||||| || |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 529 GAAGGATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAG 588
Query 536 aagactcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTT 582
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 589 AAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAG-TTT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5