BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484573

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27835.1 | Symbols:  | Gamma-thionin family protein | chr3:1...   219    9e-57


> AT3G27835.1 | Symbols:  | Gamma-thionin family protein | chr3:10321741-10322306 
REVERSE LENGTH=240
Length=240

 Score =  219 bits (118),  Expect = 9e-57
 Identities = 155/172 (90%), Gaps = 5/172 (3%)
 Strand=Plus/Plus

Query  7    CACGCAAAATCTATGGTCGAAAATAAGGATGCTCACAAATGGTACATTGTCGAAGGTCTA  66
            ||||| |||||||||||||||  ||| | |||||||||||||||||||||||||||||||
Sbjct  73   CACGCGAAATCTATGGTCGAAGTTAACGCTGCTCACAAATGGTACATTGTCGAAGGTCTA  132

Query  67   TGCTCAAAATATCCGGACTGCAATAAGCATTGCAAAGAA-AACAAATTTCCATTAGGTGG  125
            |||||||||| |||||||||||||||||| ||||||||| || ||||||||   ||||||
Sbjct  133  TGCTCAAAATTTCCGGACTGCAATAAGCACTGCAAAGAACAA-AAATTTCC---AGGTGG  188

Query  126  AAAATGCCTCAAATTTGGTGTTAATATGATGTGTACTTGTATTTCTACATAA  177
            || ||| |||||| |||||||||||||||||||||||||||||| | |||||
Sbjct  189  AACATGTCTCAAACTTGGTGTTAATATGATGTGTACTTGTATTTATTCATAA  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7746408054


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5