BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484574
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27840.1 | Symbols: RPL12-B | ribosomal protein L12-B | chr3... 756 0.0
> AT3G27840.1 | Symbols: RPL12-B | ribosomal protein L12-B | chr3:10323354-10323950
FORWARD LENGTH=597
Length=597
Score = 756 bits (409), Expect = 0.0
Identities = 530/586 (90%), Gaps = 17/586 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGCTACGACTCTTTCCATCGCAACCACGATCCG------------TTCTTCCGGT 48
|||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 ATGGCAGCTACGACTCTTTCCATCGCAACCACAATCCGTTCCTCATCTTTTTCTTCCGGT 60
Query 49 CTAGCTTCTACACATCACTTCCCTTCTCGACCCGTCGCTATAGAATTTCCGTTTAGCTTT 108
|| ||||| ||||||||||||||||||||||| || | |||||||| || |||||||||
Sbjct 61 CTTGCTTCCGCACATCACTTCCCTTCTCGACCCCTCTCGATAGAATTCCCCTTTAGCTTT 120
Query 109 GGTGTTTCTTCTTCTTCTTCCACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCC 168
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGTTTCTTCTTCTTC-T--ACGCTCAGCCACCGTGCAATCTACCTCCATCCTATATCC 177
Query 169 GCAGTCAAAGCTCCGAAGAAAATAAAGAAAATTGGATCTGAAATCTCGTCTCTGACCCTT 228
|| |||||| |||| |||||||| ||||| |||||||| || ||||||||||| |||||
Sbjct 178 GCTGTCAAAACTCCTAAGAAAATTAAGAAGATTGGATCCGAGATCTCGTCTCTAACCCTC 237
Query 229 GAAGAAGCCCGCATCCTCGTCGACTATGTCCAGGACAAATTCGGTGTTTCAATACTCTTT 288
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 GAAGAATCCCGCATCCTCGTCGACTATGTCCAGGACAAGTTCGGTGTTTCAATACTCTTT 297
Query 289 TCAGCACCTGCTGCAGCGGCTTTCCCTCCTCCCCCAGACAATGGTGGTGCGGCGGCTGCT 348
||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||
Sbjct 298 TCAGCACCTGCTGCAGCGGCTTTACCTCCTCCCCTTGACAATGGTGGTGCGACGGCTTCT 357
Query 349 GTGGAGAGGCAGACCAAATTCGATGTGGTTATCAATGACGTTCTAATTGGTAATCGTATT 408
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 358 GTGGAGAGGCAGACCACATTCGATGTGGTTATCAATGACGTTCCACGTGGTAATCGTATT 417
Query 409 GCCGTGATCAAAGCGATTAGGGCTATGACTAGCTTGT-GCTTGAATGAATCGAAAGAGCT 467
|||||||||| ||| |||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 418 GCCGTGATCACAGCCATTAGGGCTATGACTAGCTTGTCG-TTGAGTGAATCGAAAGAGCT 476
Query 468 CACAGAAGGGTTTCCGAAAAAGTTTAAAGAAGGCGTGACGAAAGATGAAGCAGAAGAAGC 527
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 477 AATAGAAGGGTTTCCGAAGAAGTTTAAAGAAGGCGTGACCAAAGATGAAGCAGAAGAAGA 536
Query 528 CAAGAAACAGCTCGAAGAAGCTGGCGCCAAGGTTTCCATTGTTTAA 573
||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 537 CAAGACACAGCTCGAAGAAGCTGGTGCCAAGGTTTCCATTGTTTAA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5