BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484575
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3... 1170 0.0
AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A... 798 0.0
> AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3:10324839-10325713
FORWARD LENGTH=875
Length=875
Score = 1170 bits (633), Expect = 0.0
Identities = 784/852 (92%), Gaps = 29/852 (3%)
Strand=Plus/Plus
Query 1 ACTCACAGAGACACACAAAACAAATCCCAAAGATTC------AG-A-AAGAAGAGAGTGA 52
|||||||||||||||||||||||||||||||| ||| || | |||||||||||||
Sbjct 1 ACTCACAGAGACACACAAAACAAATCCCAAAGCTTCAGAGGAAGAAGAAGAAGAGAGTGA 60
Query 53 AACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 112
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GA-AACAATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 119
Query 113 CACTTCCGCTACCACCCATCACTTCCCTTCCAAACCCACCGCAATCGAATTCCCATTTCG 172
|||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 CACTTCCGCTTCCACTCATCACTTCCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG 179
Query 173 TCTC-G--GTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCAATCGCCGCCGTCGAAGC 229
|||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 180 TCTCAGCTCTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCTATCTCCGCCGTCGAAGC 239
Query 230 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTCGAAGAGGCTC 288
|||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||
Sbjct 240 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTCGAAGAAGCTC 298
Query 289 GTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGCCCCTG 348
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 299 GTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCCTTAGCCCCCG 358
Query 349 CTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGGCGGCTGTAGTGGAGGAACAGA 408
| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |
Sbjct 359 CAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAA 418
Query 409 CCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGATTAAAG 468
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 CAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAG 478
Query 469 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGGATTAC 528
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGGATTAC 538
Query 529 CCaagaagtttaaagaaggtgtgactaaagatgaagctgaagaagctaagaagacccttg 588
| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 539 CAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAGAAGACTCTTG 598
Query 589 aagaagCTGGTGCTAAAGTTTCCATTGCTTAAGTTTCTTCAACAATCG-ATAAAAA---- 643
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 599 AAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGTTTCTTCAACAATCGGAAAAAAAAAAA 658
Query 644 TGTGATCTTTTTCGGAATTTATGAATCTTTTTGTGTTGTTTAGTATAGTTTGTGTTTG-G 702
|||||| |||| |||||||||||| ||||||||| | ||||||||||||||||||||| |
Sbjct 659 TGTGATATTTT-CGGAATTTATGAGTCTTTTTGT-T-GTTTAGTATAGTTTGTGTTTGAG 715
Query 703 TATTGTTGATTCAGCTTT-GAGAATTTGTTGTACTTTGAATCAATTTGGTTTCGTATTTA 761
| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 716 T-TA-TTGATTCAGCTTTTGAGAAATTGTTGTACTTTGAATCAATTTGGTTTCGTATT-A 772
Query 762 CGGATTTT-GTCTTCAACAAGTTCTTCGTTTAGATGCACATAACGTGTTTGTTAAAATGC 820
| | |||| |||||||||||||||||| | |||||||||||||| |||||||| ||||||
Sbjct 773 CAG-TTTTAGTCTTCAACAAGTTCTTCCTCTAGATGCACATAACCTGTTTGTTGAAATGC 831
Query 821 CTAGCTCAAAAA 832
||||||||||||
Sbjct 832 CTAGCTCAAAAA 843
> AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A
| chr3:10318505-10319432 FORWARD LENGTH=928
Length=928
Score = 798 bits (432), Expect = 0.0
Identities = 692/809 (86%), Gaps = 52/809 (6%)
Strand=Plus/Plus
Query 46 AGAGTGAAACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTT 105
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 58 AGAGTGAAACAAAAATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCAT 117
Query 106 CTCCT-CTCACTTC-CGCTACCACCCATCACTTCCCTT-CCAAACCCACCGCAATCGAAT 162
|| | || || || |||| ||| | |||||||||||| || || ||||| | |||||||
Sbjct 118 CTTATCCT-AC-TCTCGCTTCCATCAATCACTTCCCTTCCCGAA-CCACCACCATCGAAT 174
Query 163 TCCCATTTCG--TC--T--CGGTTC-T--T---C--T-AGCCACCGTGCAATCAACCTCC 207
|||| | ||| || | ||||| | | | | | ||||||||||| | | ||||
Sbjct 175 TCCCCTCTCGCTTCGGTGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCC 234
Query 208 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCAT 267
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCAT 294
Query 268 CCCTTACCCTCGAAGAGGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCT 327
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 CCCTAACCCTCGAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCT 354
Query 328 CCCCACTCTCTTTAGCCCCTGCTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGG 387
||||||||||||||||||| || |||||||| ||||| ||||| || |||||||||||||
Sbjct 355 CCCCACTCTCTTTAGCCCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGG 414
Query 388 CGGCTGTAGTGGAGGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 447
|||||||||||||||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 415 CGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 474
Query 448 CTCGTATTGCAGTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 507
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CTCGTATTGCAGTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 534
Query 508 AGGAGCTAATTGAAGGATTACCCaagaagtttaaagaaggtgtgactaaagatgaagctg 567
|||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 535 AGGAGCTAATCGAAGGATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTG 594
Query 568 aagaagctaagaagacccttgaagaagCTGGTGCTAAAGTTTCCATTGCTTAAG-TTTCT 626
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 595 AAGAAGCTAAGAAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTT 654
Query 627 -TCAACAATCGATAAA-AA-T-GTGATCTTTT-TCGGAATTT-AT-GAATCTTTTTGTGT 679
| || || | ||| || | || ||||||| | ||||||| || | |||||| ||||
Sbjct 655 ATAAAAAAAAAA-AAAGAAGTTGTTATCTTTTCT-GGAATTTGATTGG-TCTTTT-GTGT 710
Query 680 TGTTTAGTATAGTTTGTGTTTGGTATTGTTGATTCAGCTTTGAGAATTTGTTGTACTTTG 739
|||||||||||||||| || ||| |||||||| | | |||| |||||| ||||
Sbjct 711 TGTTTAGTATAGTTTGCGTCTGGAATTGTTGA----G-----A-AATT-GTTGTAATTTG 759
Query 740 AATCA-ATTTGGTTTCGTATTTA-CGGATTTTGTC-TTCAACA-AG-TTCTTCGTTTAGA 794
||||| |||||||||| ||| | | ||||| | | || | || || || || ||
Sbjct 760 AATCACATTTGGTTTCCCATT-AGCTGATTTCGCCATTGATGTGAGCTTTTTGGT--AGC 816
Query 795 TGCACATAACGTGTTTGTTAAAATGCCTA 823
|||||||||| |||||||| |||||||||
Sbjct 817 TGCACATAACATGTTTGTTGAAATGCCTA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5