BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484576
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27860.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 2388 0.0
AT1G35970.1 | Symbols: | transposable element gene | chr1:1339... 263 5e-69
> AT3G27860.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr3:10326128-10328086 FORWARD LENGTH=1959
Length=1959
Score = 2388 bits (1293), Expect = 0.0
Identities = 1786/2010 (89%), Gaps = 90/2010 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAATATTCTACCGACTGGTTCTAGGGTTTCTGAGAATGATGGTTCTGATGATGAC 60
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1 ATGGGGAATATTCTACCGACTGGGTCTAGGGTTTCTGAGAACGAGGGTTCTGATGACAAC 60
Query 61 CAATTGAAGGAAAACGATGTTAAGATGGAGAATGTTAACGAAGACGACTCTGAACAAATT 120
|||||||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 61 AAATTGAAGGAGCACGATGTTAAGATGGAGAATGTTAA-G--GAAGACTCTGAACAAATT 117
Query 121 GAAGATTATGTGATGAGTGAGGTTTCGTCATTGAGAGATAATTTTGAAGAACAAGAGGAA 180
| |||| |||||| ||||| |||||| |||||||||||||||||| | | | |||
Sbjct 118 GGAGATAATGTGAGGAGTGGGGTTTCTTCATTGAGAGATAATTTT---G----A-A-GAA 168
Query 181 TTAGAAAATGGGTTTCATGTTGGTGATTTTGTTTGGGGAAAAGAAGTTAATAGTCAACAA 240
|||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||
Sbjct 169 TTAGAAAATGGGTTTCATGTGGGAGATTTTGTTTGGGGAGAAGAAGCCAATAGTCAACAA 228
Query 241 TGGTGGCCAGGTCAGATTTATGATTCTTTAGATGCTTCAGATTTGGCATTGAAGACAATG 300
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 229 TGGTGGCCAGGTCAGATTTATGATTCTTTAGATGCTTCAGACTTGGCTTTGAAGACAATG 288
Query 301 CA-AAAGGGTAAATTACTTGTGGCTTATTTTGGAGATGGGAAG-TTTT--G-TTGGTGTA 355
|| ||||| ||||||||||||||| |||||||||||||||| | |||| | ||||||||
Sbjct 289 CAGAAAGG-TAAATTACTTGTGGCGTATTTTGGAGATGGGA-GCTTTTTTGGTTGGTGTA 346
Query 356 ATCCATTGGAATTGAAACCGTTTCTTGAGAATTTTAAAGAGTTTTCGAAGATGAGTGAAT 415
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 347 ATCCATTGGAATTGAAACCGTTTCTTGAGAATTTCAAAGAGTTTTCGAAGATGAGTGATT 406
Query 416 CTAAAAGGTTTCTTAGTGCTGTGGAAGAAGCTGTGAGAGAGATTGGTGAACATGTTGAGC 475
| | |||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 407 CGAGAAGGTTTCTTCTTGCTGTGGAAGATGCTGTGAGAGAGATTGGTGAGCATGTTGAG- 465
Query 476 AA-TTTTTGGTTTGTGATGACGCGGCTTTGGTTAGTTCTGTAGCTTTGAATTCGGGGATT 534
|| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct 466 AAGTTTTTGGTTTGTGATGACGCTGCTTTAGTTAGTTCTGTAGCTTTGAATTTGGGGATT 525
Query 535 AAGGAAGGTGTTGTTGTGCCTGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTTGAA 594
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 526 AAGGATGGTGTTGTTGTGCCTGATGTTAGAAGAAAGATTATATCGTCTTTGGTTCTTGAA 585
Query 595 AATCCTGGAGTTGTTCTTGAAGATGTTAAAAGACTTGCGAAGACAGTTAGTTTT-AGTGA 653
|| || || ||||||||||||||||||||||||||||| | ||| ||||| ||| | |||
Sbjct 586 AACCCCGGTGTTGTTCTTGAAGATGTTAAAAGACTTGCCATGACGGTTAGATTTGA-TGA 644
Query 654 TTTGCTAGAGATTGAGGTTTTGAAGAGGAAGATATCTGCGTTTTATCGGTGTAAAGGAAG 713
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 645 TTTGTTAGAGATTGAGGTTTTGAGGAGGAAGATATCGGCGTTTTATCGGTGTAAAGGAAG 704
Query 714 GTTTGATTTAGCTAAGTTTGATGAACATCAATATATTATTGGACTTGAACACAAAGAGGA 773
||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
Sbjct 705 GTTTGATTTAGCTAAGTTTGATGAACATCGATATATTATAGGACTTGAAGACAAAGAGCA 764
Query 774 TGAATCTTGTCAGAGATCATTGAGAAAGTGTACAGGGTTTGCTATG-AAAAAGAGGAAAT 832
||||||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||
Sbjct 765 TGAATCTTGTCAGAGATTATTGAGAAAGTGTTCAGGTTTTGCTA-GCAAAAAGAGGAAAT 823
Query 833 GTGGTGATGTGGCAACCACTGGTTCTACTACTTTGAGGAGGAGAAGACTGAGTGAAGTAT 892
|||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 824 GTGGTGATGTAGCAACCACTGGTTCTACTACTTTGAGGAAGAAAAGACTGAGTGAAGTTT 883
Query 893 CGAAGATTGAACAC-GCTGAGGAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAG 951
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 884 CGAAGATTGAA-ACCGCTGAGAAAGAAATTAGTAACGGGAAGAGTTTGTCGTCGAGGAAG 942
Query 952 AGGAAGAGCAAAATGGGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAG 1011
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AGAAAGAGCAAAAGGGGTTTGGATGAGAATGATGATGATGGGATTGAGAAAAGAGAAGAG 1002
Query 1012 TCAAACGACTCAAACCATTTAGAAGAGACTGAGAAAAAAGATGGTTCAGATATCGAAATT 1071
|| ||||||||||||||||||||||||| | || ||| | ||||
Sbjct 1003 TCGAACGACTCAAACCATTTAGAAGAGA--G----------TG----AGA-A--GAAA-- 1041
Query 1072 GATGTTGATTTAGCAACTCCATTGGCTTCAATCTGCAAAAGGCTCAAGGTTGATGTTACT 1131
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1042 GATG---ATTTAGCAACTCCATTGGCTTCAATCTGCAAAAGGCTCAATGTTGATGTTTCT 1098
Query 1132 TCAAGTGTTAAAAGGAGCAATGGAAATGGCGAGACGATATTGCAAACATGTAAAAGAGAG 1191
||| ||||||||||| | ||||||||||||||| | |||||||| ||| |||||||||||
Sbjct 1099 TCATGTGTTAAAAGGTGTAATGGAAATGGCGAGGCAATATTGCAGACAGGTAAAAGAGAG 1158
Query 1192 AGGAAGAAAAGTAAGTATCTTTCGCCTGAATACATGACAGATTTTAGTTGCAGAGCGAGA 1251
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1159 AGGAAGAAAAGCAAGTATCTTTCTCCTGAATACATGACAGATTTTAGTTGCAGAGCGAGA 1218
Query 1252 AAGAGCAAAATAGAATCTGCTGAATCAAGTCAGATCCGAGTAGCAGAGCGAAT-A-A-CG 1308
|||| |||||||||||||||||||||||||||||||| |||||||| |||||| | | ||
Sbjct 1219 AAGATCAAAATAGAATCTGCTGAATCAAGTCAGATCCAAGTAGCAGTGCGAATGACAACG 1278
Query 1309 ACTGAAAA-AGCTATCGATTTTGTGAAACTGGGAGTTACATCAGAGGAAATGCTGGATCT 1367
|| || | ||| |||||| ||||||||||||||| |||| ||||||||||||||| |||
Sbjct 1279 CCT-AATACAGCCATCGATGTTGTGAAACTGGGAGCTACACCAGAGGAAATGCTGGCTCT 1337
Query 1368 AATCCGTGCAGCGGCTCTCAATGCACAATATCCAAAAGACTATAATA---CCTCATGTGA 1424
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1338 AATCCGTGCGGCTGCTCTCAATGCACAATATCCAAAAGACTATAATAGTACCTCATGTGA 1397
Query 1425 CATGGTAAGAGAGTTTGTGTCCACTTATCGAAGCTTCAATAACAAGAGAAACATTTCAGA 1484
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 1398 CATGGTAAGAGAGTTTGTGTCCAATTATCGAAGCTTCAATAACAAGAGGAACCTTTCAGA 1457
Query 1485 TGTAGAGAAGCAGCCTGAAGTAGTGGATGAG-AAAGAGCAAACCAGAAATGA-ACCAAAT 1542
||||||||||||||||||||| | | || ||| || | ||||| || | |||
Sbjct 1458 TGTAGAGAAGCAGCCTGAAGT-GAA-AC-AGGAAATAGTGGATGAGAAA-GAGA--AAAC 1511
Query 1543 GAGAAGCAATTTTC-AGGTGTTGAGCTATATATCAAGACTGGTTTTGGTTCTACTCTGCC 1601
|||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 CAGAA--A-TGAACCAGGTGTTGAGCTATATATCAAGACTGGTTTTGGTTCTACTCTGCC 1568
Query 1602 TTCAAAAGATGATTTGATTGATATATACGAAAAGTTTGGAGCTTTGGACAAAGAGAGAAG 1661
|||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||
Sbjct 1569 TTCAAAAGATGATTTGATCAAAACATACGAAAAGTTTGGAGCTTTAGACAAAGAGAGAAG 1628
Query 1662 CTATATCTTCGACAACAACTCATGCGCACGCGTTGCCTTCT-TCAATGCATCTGATGGAG 1720
|||||| ||| |||| ||||||||| || |||||||||| | | ||||||||||||||||
Sbjct 1629 CTATATGTTCAACAATAACTCATGCTCATGCGTTGCCTT-TGTGAATGCATCTGATGGAG 1687
Query 1721 AACAAGCATTTAACAAGTCGTTAGAGAAATGCCCATTTGCTACTACTTCCACAGTAACAT 1780
|| |||| ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1688 AAGAAGCTTTTAACAGGTCATTAGAGAAATGTCCATTTGCCACTACTTCCACAGTAACAT 1747
Query 1781 TCAAGCTCAAGTATCCATCTTCTGCTTCACCTGA-AA-AT-----CTTAATGG-GAA-GA 1831
|||||||| |||||||||||||||||||| |||| || | || || ||| |
Sbjct 1748 TCAAGCTCGAGTATCCATCTTCTGCTTCATCTGAGAAGAAGGAAGCTGAAACAAGAAAGG 1807
Query 1832 -CG-----GAAATCGAGTGTTTGAAAGAGAAGCTTGAGGAGATAAAATCATTGCTGGAAC 1885
|| |||||||||||||||||||||||||| |||| ||||| | ||||| | || |
Sbjct 1808 GCGTAACAGAAATCGAGTGTTTGAAAGAGAAGCTCGAGGGGATAAGAGCATTGTTAGATC 1867
Query 1886 AATCAGAGGGAAAGATTACAGAAGAATTGAAGATGAAACTTGAAGAT-AAGTCAAGAAAC 1944
||||||||||||||||||| ||||||||||| ||||||||||||||| || |||||||||
Sbjct 1868 AATCAGAGGGAAAGATTACGGAAGAATTGAAAATGAAACTTGAAGATGAA-TCAAGAAAC 1926
Query 1945 TTGCTTGACAAGGTAAGGAAGATGATTATT 1974
||||||||||||||||||||||||||||||
Sbjct 1927 TTGCTTGACAAGGTAAGGAAGATGATTATT 1956
> AT1G35970.1 | Symbols: | transposable element gene | chr1:13397664-13403558
FORWARD LENGTH=5895
Length=5895
Score = 263 bits (142), Expect = 5e-69
Identities = 181/200 (91%), Gaps = 1/200 (1%)
Strand=Plus/Plus
Query 425 TTCTTAGTGCTGTGGAAGAAGCTGTGAGAGAGATTGGTGAACATGTTGAGCAATTTTTGG 484
||||| ||||| |||||||| || ||||||||| | |||||||||||||||||||||||
Sbjct 5696 TTCTTTGTGCTAAGGAAGAAGTTGGGAGAGAGATCGATGAACATGTTGAGCAATTTTTGG 5755
Query 485 TTTGTGATGACGCGGCTTTGGTTAGTTCTGTAGCTTTGAATTCGGGGATTAAGGAAGGTG 544
|||||||||||||| || ||||||||| ||||||||||||| | |||| |||||||| |
Sbjct 5756 TTTGTGATGACGCGACTGTGGTTAGTTATGTAGCTTTGAATCCAGGGAGTAAGGAAGACG 5815
Query 545 TTGTTGTGCCTGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTTGAAAATCCTGGAG 604
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5816 TTGTTGTGAATGATGTTAGAAGAGAGATTATATCGTCTTTGGTTCTAGAAAATCCTGGAG 5875
Query 605 TTGTTCTTGAAGATGT-TAA 623
|||||||||||||||| |||
Sbjct 5876 TTGTTCTTGAAGATGTCTAA 5895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5