BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484578
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27880.1 | Symbols: | Protein of unknown function (DUF1645)... 808 0.0
> AT3G27880.1 | Symbols: | Protein of unknown function (DUF1645)
| chr3:10338212-10339436 FORWARD LENGTH=1225
Length=1225
Score = 808 bits (437), Expect = 0.0
Identities = 654/751 (87%), Gaps = 45/751 (6%)
Strand=Plus/Plus
Query 119 AAAAATCTGATCCAATGGAGAAAGACGATGAATCTAGTCCTTACACGGCGTCGTTTTCAC 178
|||||||||||||||||||||||||| | | | | | | ||||||||||||||||
Sbjct 204 AAAAATCTGATCCAATGGAGAAAGAC---G-A--T-G--C--A-ACGGCGTCGTTTTCAC 251
Query 179 CTAGCTTCAGTACTTATTCTGGCGATCGACTCGTAGAAATCGCCGAAAGAGTTTGTTACA 238
||||||||||||||||||| |||||| ||||||| |||||||||||| |||| |||||||
Sbjct 252 CTAGCTTCAGTACTTATTCCGGCGATAGACTCGTCGAAATCGCCGAACGAGTCTGTTACA 311
Query 239 AAGAGAAATCAGATGACGAGTTCGAGTTTGCAATGACGACAGA-GTCTTCTTCCGGCAAC 297
||||||||||||| | ||| ||||||||| | | | || | || ||||||||||| ||
Sbjct 312 AAGAGAAATCAGACGCCGAATTCGAGTTTTCGACGGCGGC-GACTTCTTCTTCCGGTGAC 370
Query 298 GGTGGACTAGTTTTCCCTGTTTTTAACAAGAATCTAATCTCC-GAAACCAAAACCTCCGC 356
|||||||||||||||||||| ||||||||||||||||||||| || | |||||
Sbjct 371 GGTGGACTAGTTTTCCCTGTATTTAACAAGAATCTAATCTCCGGAGA--TGTTTCTCCG- 427
Query 357 CGTGGAAGAGGCGGTTACAATTCCGTTGAAGGATCTATTCCTCCGTGAACGTAACGAT-- 414
| ||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 428 -G-AGAA-A----G-T--AATTCCGTTGAAGGATCTATTCCTCCGTGAACGTAACGATCA 477
Query 415 -CTACCACCGCAACAAACATATTCATCGTCTTCCGACGAAGACGAAGAAGACGATGAGTT 473
| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 478 ACAACCACCGCAACAAACATACTCATCGTCTTCCGACGAAGAAGAAGAAGACGACGAGTT 537
Query 474 TGATTCGATCCCAAGCGAGATCTATTGTCCATGGACACCAGCGAGATCTACGGCGGAGAT 533
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 TGATTCGATCCCGAGCGAGATCTATTGTCCATGGACACCAGCGAGATCTACGGCGGATAT 597
Query 534 GTCACCAAGTGGTGGTTGTAGAAAAAGTAAATCTACAGGATCATCTTCAACCTCAT-CAT 592
|||||||||||| || ||||||||||| ||||||||||||||||| |||||||| | |||
Sbjct 598 GTCACCAAGTGGAGGATGTAGAAAAAGCAAATCTACAGGATCATCATCAACCTC-TACAT 656
Query 593 GGTCAACGAAACGATGGCGTTTGAGAGACTTTCTCAAGAGAAGTAAAAGTGATGGTAAAC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGTCAACGAAACGATGGCGTTTGAGAGACTTTCTCAAGAGAAGTAAAAGTGATGGTAAAC 716
Query 653 AATCACTTAAATTCTTGAATCCAACAAACTCCATTAACAGAGATGATGAATCTTCT---T 709
||||||||||||||||||| ||||||||| | | | |||||||||||||| |
Sbjct 717 AATCACTTAAATTCTTGAACCCAACAAACAG-AG-ATGAT-GATGATGAATCTTCCAAAT 773
Query 710 CGAAGAAGAAGG----AGAA--AGTTTCAGTTTCTGCACATGAGAAGTTTTATTTGAGGA 763
|||||||||| | || |||| |||||||||||||||||||||||||| ||||||
Sbjct 774 CGAAGAAGAAAGTTTCAGTTTCAGTTACAGTTTCTGCACATGAGAAGTTTTATCTGAGGA 833
Query 764 ATAAAGCGATTAAAGAAGAAGACAAGAGAAAATCATATTTACCGTACAAGCAAGATCTTG 823
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 834 ATAAAGCGATTAAAGAAGAAGACAAGAGAAAGTCATATTTACCGTACAAGCAAGATCTTG 893
Query 824 TTGGACTTTTTTCCAATATTAATCGTTTTGG 854
|||| |||||||| |||||| |||||| |||
Sbjct 894 TTGGTCTTTTTTCTAATATTCATCGTTATGG 924
Score = 159 bits (86), Expect = 4e-38
Identities = 114/126 (90%), Gaps = 8/126 (6%)
Strand=Plus/Plus
Query 1 TTAATTACCAATATTGCCATTTCCATGTG-CCCCAACCACTTCCTCCTATATATACGGCT 59
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 42 TTAATTACCAAAATTGCCATTTCCATGTGCCCCCAACCACTTCCTCCTATATATACGGCT 101
Query 60 ATTTACACAACAAGACAAAAAACA-----CTCCATTAAAGCACAA--CTCCAAAACCTCT 112
||||| |||||||||||||||| | ||||||||||||| || |||||||||||||
Sbjct 102 ATTTATACAACAAGACAAAAAAAAAAAAACTCCATTAAAGCAAAAAACTCCAAAACCTCT 161
Query 113 CTCTCT 118
||||||
Sbjct 162 CTCTCT 167
Score = 158 bits (85), Expect = 1e-37
Identities = 126/144 (88%), Gaps = 9/144 (6%)
Strand=Plus/Plus
Query 850 TTTGGATCTATTCGGTG------ACGATTTTATATTCGTATTTAATAAATTATAAAAGAT 903
||||||||||||||||| | ||||||| |||||||||||||||||||| |||||
Sbjct 955 TTTGGATCTATTCGGTGAAAATTATGATTTTAAATTCGTATTTAATAAATTATGTAAGAT 1014
Query 904 GTAGATGTGTATTTTTAATAATTACATCTTAAATTATGTTTTTA---GTTTGTACACAAT 960
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1015 GTAGATTTGTATTTTTAATAATTACATCTTAAATTATGTTTTTATTAGTTTGTAAACAAT 1074
Query 961 TTTGATCATTTTAATAATCATATA 984
|||||| ||||| ||||||||||
Sbjct 1075 TTTGATTATTTTCGTAATCATATA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5