BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484579
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27890.1 | Symbols: NQR | NADPH:quinone oxidoreductase | chr... 1048 0.0
> AT3G27890.1 | Symbols: NQR | NADPH:quinone oxidoreductase | chr3:10350656-10352033
REVERSE LENGTH=837
Length=837
Score = 1048 bits (567), Expect = 0.0
Identities = 697/758 (92%), Gaps = 16/758 (2%)
Strand=Plus/Plus
Query 1 TTTGTGTATTCCTTCACCTAATCTCTCTCATCC-TTCTTTATCGGTCAACACTTTCTCAA 59
||| ||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||
Sbjct 18 TTTATGTATTCCTTCACCTAA--TCTCTCATCCTTTCTTCATCGGTCAACATTTTCTCAA 75
Query 60 A--CTCTCTAAT-CAGAAAAAATGGAAGCAGTAACGGCGATTAAGCCA-TTAATTAGAGT 115
| ||||||||| || ||||||||||||||||||||||||||||||| || || |||||
Sbjct 76 ACTCTCTCTAATCCA-TAAAAATGGAAGCAGTAACGGCGATTAAGCCACTT-ATCAGAGT 133
Query 116 CGCTGCTCTCTCCGGTTCCCTCCGTAAAACCTCTTTCAACACTGGTCTCCTCCGTGCAGC 175
|||||||||||| ||||| ||||| |||||||| ||| | |||||||||||||| || ||
Sbjct 134 CGCTGCTCTCTCTGGTTCTCTCCGGAAAACCTCCTTCCATACTGGTCTCCTCCGCGCTGC 193
Query 176 GATTGATTTGACGAAAGAATCGGTTCCGGGAATT-CAAATTGAGTATATTGATATATCTC 234
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
Sbjct 194 GATTGATTTGACGAAAGAATCGGTTCCGGG-ATTGCAAATTGAGTATATAGATATATCAC 252
Query 235 CGTTACCGTTGATAAACACGGATCTTGAAGTCAACGGTACTTATCCTCCGGTCGTTGAAG 294
|||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 253 CGTTACCGTTAATTAACACGGATCTTGAAGTCAACGGTACTTATCCTCCAGTTGTTGAAG 312
Query 295 CTTTCCGGCAGAAGATTCTTGAAGCTGATAGTATCTTGTTTGCTTCTCCTGAGTATAATT 354
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 313 CTTTCCGACAGAAGATTCTTGAAGCTGATAGTATCTTGTTTGCTTCTCCTGAGTATAACT 372
Query 355 TCTCTGTTTCAGCTCCACTTAAGAATGCTCTTGACTGGGCTTCAAGACCACCTAATGTTT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TCTCTGTTTCAGCTCCACTTAAGAATGCTCTTGACTGGGCTTCAAGACCACCTAATGTTT 432
Query 415 GGGCTGACAAACCCGCTGCTGTTATAAGCACCGGTGGAGGTTTTGGTGGAGGAAGATCAC 474
|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 433 GGGCGGACAAACCAGCTGCTATTATAAGCACCGGTGGAGGTTTTGGTGGAGGAAGATCGC 492
Query 475 AATATCATCTTCGACAAATTGGAGTATTCATTGATCTTCATTTCATCAACAAACCCGAGT 534
| || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 493 AGTACCATCTTCGACAAATCGGAGTCTTCCTTGATCTTCATTTCATCAACAAACCCGAGT 552
Query 535 TTACTCTCAATGCGTTTCAGCCGCCTCAGAAATTCGATGCAGAAGGAAACCTAGTCGATG 594
||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 553 TTACTCTCAATGCATTTCAGCCACCTCAGAAATTTGATGCAGAAGGAAACCTTGTCGATG 612
Query 595 AAGCGGCTAAGGAGAGGTTGAAACAAGTCCTGCTCTCGTTACAAGCATTTAC-CTTACGA 653
||| | ||||||||||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct 613 AAGTGACTAAGGAGAGGTTGAAACAAGTCCTTCTCTCGTTACAAGCATTCACACTT-CGA 671
Query 654 CTTCAAGGTAAGTAAGTTAAGTGGGTTAAATCTCTGAGCATTTGTGAGATCGGTCGTGTG 713
||||||||||||||| | |||||| |||| ||| ||| |||||| |||| |||||||||
Sbjct 672 CTTCAAGGTAAGTAAATGAAGTGGATTAATTCT-TGATCATTTG--AGATTGGTCGTGTG 728
Query 714 ATGAAAATAATGCCAATTGTTGTGATAATAAACAGTGT 751
|| |||||||||||||||||||||||||||||||||||
Sbjct 729 ATAAAAATAATGCCAATTGTTGTGATAATAAACAGTGT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36469990722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5