BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484581 Length=1358 Score E Sequences producing significant alignments: (Bits) Value AT3G27925.1 | Symbols: DEGP1, Deg1 | DegP protease 1 | chr3:103... 2115 0.0 > AT3G27925.1 | Symbols: DEGP1, Deg1 | DegP protease 1 | chr3:10366371-10368905 REVERSE LENGTH=1649 Length=1649 Score = 2115 bits (1145), Expect = 0.0 Identities = 1307/1381 (95%), Gaps = 27/1381 (2%) Strand=Plus/Plus Query 1 AATGGCGACGACGACGAGTTGTTCGcttctcctttcttctactctcttccttcactctcc 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 41 AATGGCGACGACGACGAGTTGTTCGCTTCTCCTTTCTTCCACTCTCTTCCTTCACTCTCC 100 Query 61 tccttcttctcaactctccttcttcaacctctcttcttcacgatcctctccaatttctct 120 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 101 TCCTTCTTCTCACCTCTCCTTCTTCAATCTCTCTTCTTCACGATCCTCTCCAATTTCTCT 160 Query 121 ctACCCAATCCGATCCAAACGCTATTTCCGAATTCTCTCGAAGCTTCCACTAAACGACAA 180 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 161 TTACCCAATCCGATCCAAACGCTATTTCCGAATCCTCTCGAAGCTTTCACTAAACGACAA 220 Query 181 CAAC----A--ACGATGATGATACTCTTC-TTCTTCCTCCGTTCTCCGCCGTTAAGCCTT 233 |||| | |||||||||||||||||| || || ||||||||||||||||||| |||| Sbjct 221 CAACAGAGACGACGATGATGATACTCTTCATT-TTACTCCGTTCTCCGCCGTTAAACCTT 279 Query 234 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTCTCACTATTCGCCGCTTCT----CC- 288 |||||||||||||||||||||||||||||||||| ||||| |||||||||||| || Sbjct 280 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTTTCACTCTTCGCCGCTTCTCCCGCCG 339 Query 289 -T---TCT---TCGGCGTTTGTAGTCAGTACTCCGAGGAAACTTCAAACTGATGAGCTCG 341 | ||| |||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 340 TTGAATCTGCCTCGGCGTTTGTAGTTAGTACTCCGAAGAAACTTCAAACTGATGAGCTCG 399 Query 342 CCACTGTTCGTTTGTTTCAAGAGAATACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 401 | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 400 CGACGGTTCGTTTGTTTCAAGAGAACACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 459 Query 402 TCAGGCAGGACGCGTTTACATTGGATGTTCTTGAGGTACCACAAGGCTCTGGTTCAGGAT 461 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 460 TGAGGCAGGACGCGTTTACATTGGACGTTCTTGAGGTACCTCAAGGCTCTGGTTCAGGAT 519 Query 462 TTGTGTGGGATAAGCAAGGTCACATTGTTACCAATTATCATGTTATTCGTGGTGCTTCTG 521 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 520 TTGTGTGGGATAAGCAAGGTCATATTGTTACCAATTACCATGTTATTCGTGGTGCTTCTG 579 Query 522 ATCTCAGGGTGACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGATC 581 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 580 ATCTCAGGGTCACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGACC 639 Query 582 AAGATAAGGATGTTGCGGT-TCTACGTATTGATGCGCCGAAAAACAAATTAAGACCTATA 640 |||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||| Sbjct 640 AAGATAAGGATGTTGCAGTAT-TACGTATTGATGCACCGAAAAACAAATTAAGACCTATA 698 Query 641 CC-GATTGGAGTCTCTGCGGATCTTCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 699 || | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 699 CCTG-TTGGAGTCTCTGCTGATCTGCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 757 Query 700 TTTTGGACTTGATCATACTCTCACAACTGGTGTTATTAGTGGTTTACGAAGAGAAATTAG 759 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 758 ATTTGGACTTGATCATACTCTCACAACTGGTGTTATAAGTGGTTTGCGAAGAGAAATTAG 817 Query 760 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCTGCTATTAACCC 819 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 818 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCAGCCATTAACCC 877 Query 820 TGGTAATAGTGGAGGACCTCTTCTAGATAGTTCAGGAACGCTAATTGGTATAAACACAGC 879 |||||| || |||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 878 TGGTAACAGCGGAGGACCTCTTCTAGATAGCTCAGGAACGTTAATTGGTATAAACACAGC 937 Query 880 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGACACCGT 939 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 938 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGATACAGT 997 Query 940 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACAAGACCAATCTTAGGTAT 999 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 998 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACCAGACCAATCTTAGGTAT 1057 Query 1000 CAAATTCGCGCCGGACCAATCTGTTGAACAATTGGGAGTGAGTGGTGTGCTCGTCTTGGA 1059 ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1058 CAAATTCGCACCGGACCAATCTGTTGAGCAATTGGGAGTGAGCGGTGTGCTCGTCTTGGA 1117 Query 1060 TGCTCCTCCAAGTGGTCCAGCCGGGAAAGCCGGACTTCAGTCAACGAAACGTGACGGTTA 1119 |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct 1118 TGCTCCTCCAAGTGGTCCAGCCGGCAAAGCCGGACTTCAGTCAACAAAACGTGATGGTTA 1177 Query 1120 CGGGAGACTAATACTAGGAGACATAATCACGTCAGTGAACGGTACAAAAGTCTCTAACGG 1179 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1178 CGGGAGACTAGTACTAGGAGACATAATCACGTCGGTGAACGGTACAAAAGTCTCTAACGG 1237 Query 1180 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1297 Query 1240 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAACCGGACGAGTC 1299 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1298 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAGCCGGACGAGTC 1357 Query 1300 TTAGAAACGTCGTTGAAAGAAGTAAATATA--TAACGTGTAGaaaaaaaaGTCCGGTGGG 1357 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1358 TTAGAAACGTCGTTGAAAGAAGTAAATATACATAACGTGTAGAAAAAAA-GTCCGGTGGG 1416 Query 1358 T 1358 | Sbjct 1417 T 1417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66867125940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5