BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484581
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27925.1 | Symbols: DEGP1, Deg1 | DegP protease 1 | chr3:103... 2115 0.0
> AT3G27925.1 | Symbols: DEGP1, Deg1 | DegP protease 1 | chr3:10366371-10368905
REVERSE LENGTH=1649
Length=1649
Score = 2115 bits (1145), Expect = 0.0
Identities = 1307/1381 (95%), Gaps = 27/1381 (2%)
Strand=Plus/Plus
Query 1 AATGGCGACGACGACGAGTTGTTCGcttctcctttcttctactctcttccttcactctcc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 41 AATGGCGACGACGACGAGTTGTTCGCTTCTCCTTTCTTCCACTCTCTTCCTTCACTCTCC 100
Query 61 tccttcttctcaactctccttcttcaacctctcttcttcacgatcctctccaatttctct 120
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 101 TCCTTCTTCTCACCTCTCCTTCTTCAATCTCTCTTCTTCACGATCCTCTCCAATTTCTCT 160
Query 121 ctACCCAATCCGATCCAAACGCTATTTCCGAATTCTCTCGAAGCTTCCACTAAACGACAA 180
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 161 TTACCCAATCCGATCCAAACGCTATTTCCGAATCCTCTCGAAGCTTTCACTAAACGACAA 220
Query 181 CAAC----A--ACGATGATGATACTCTTC-TTCTTCCTCCGTTCTCCGCCGTTAAGCCTT 233
|||| | |||||||||||||||||| || || ||||||||||||||||||| ||||
Sbjct 221 CAACAGAGACGACGATGATGATACTCTTCATT-TTACTCCGTTCTCCGCCGTTAAACCTT 279
Query 234 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTCTCACTATTCGCCGCTTCT----CC- 288
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 280 TCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTTTCACTCTTCGCCGCTTCTCCCGCCG 339
Query 289 -T---TCT---TCGGCGTTTGTAGTCAGTACTCCGAGGAAACTTCAAACTGATGAGCTCG 341
| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 340 TTGAATCTGCCTCGGCGTTTGTAGTTAGTACTCCGAAGAAACTTCAAACTGATGAGCTCG 399
Query 342 CCACTGTTCGTTTGTTTCAAGAGAATACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 401
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 400 CGACGGTTCGTTTGTTTCAAGAGAACACTCCTTCCGTTGTTTACATCACTAATCTCGCCG 459
Query 402 TCAGGCAGGACGCGTTTACATTGGATGTTCTTGAGGTACCACAAGGCTCTGGTTCAGGAT 461
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 460 TGAGGCAGGACGCGTTTACATTGGACGTTCTTGAGGTACCTCAAGGCTCTGGTTCAGGAT 519
Query 462 TTGTGTGGGATAAGCAAGGTCACATTGTTACCAATTATCATGTTATTCGTGGTGCTTCTG 521
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 520 TTGTGTGGGATAAGCAAGGTCATATTGTTACCAATTACCATGTTATTCGTGGTGCTTCTG 579
Query 522 ATCTCAGGGTGACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGATC 581
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 580 ATCTCAGGGTCACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGACC 639
Query 582 AAGATAAGGATGTTGCGGT-TCTACGTATTGATGCGCCGAAAAACAAATTAAGACCTATA 640
|||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||
Sbjct 640 AAGATAAGGATGTTGCAGTAT-TACGTATTGATGCACCGAAAAACAAATTAAGACCTATA 698
Query 641 CC-GATTGGAGTCTCTGCGGATCTTCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 699
|| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 699 CCTG-TTGGAGTCTCTGCTGATCTGCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCC 757
Query 700 TTTTGGACTTGATCATACTCTCACAACTGGTGTTATTAGTGGTTTACGAAGAGAAATTAG 759
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 758 ATTTGGACTTGATCATACTCTCACAACTGGTGTTATAAGTGGTTTGCGAAGAGAAATTAG 817
Query 760 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCTGCTATTAACCC 819
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 818 TTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCAGCCATTAACCC 877
Query 820 TGGTAATAGTGGAGGACCTCTTCTAGATAGTTCAGGAACGCTAATTGGTATAAACACAGC 879
|||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 878 TGGTAACAGCGGAGGACCTCTTCTAGATAGCTCAGGAACGTTAATTGGTATAAACACAGC 937
Query 880 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGACACCGT 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 938 CATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGATACAGT 997
Query 940 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACAAGACCAATCTTAGGTAT 999
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 998 TGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACCAGACCAATCTTAGGTAT 1057
Query 1000 CAAATTCGCGCCGGACCAATCTGTTGAACAATTGGGAGTGAGTGGTGTGCTCGTCTTGGA 1059
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1058 CAAATTCGCACCGGACCAATCTGTTGAGCAATTGGGAGTGAGCGGTGTGCTCGTCTTGGA 1117
Query 1060 TGCTCCTCCAAGTGGTCCAGCCGGGAAAGCCGGACTTCAGTCAACGAAACGTGACGGTTA 1119
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1118 TGCTCCTCCAAGTGGTCCAGCCGGCAAAGCCGGACTTCAGTCAACAAAACGTGATGGTTA 1177
Query 1120 CGGGAGACTAATACTAGGAGACATAATCACGTCAGTGAACGGTACAAAAGTCTCTAACGG 1179
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1178 CGGGAGACTAGTACTAGGAGACATAATCACGTCGGTGAACGGTACAAAAGTCTCTAACGG 1237
Query 1180 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 GAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGT 1297
Query 1240 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAACCGGACGAGTC 1299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1298 TCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAGCCGGACGAGTC 1357
Query 1300 TTAGAAACGTCGTTGAAAGAAGTAAATATA--TAACGTGTAGaaaaaaaaGTCCGGTGGG 1357
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1358 TTAGAAACGTCGTTGAAAGAAGTAAATATACATAACGTGTAGAAAAAAA-GTCCGGTGGG 1416
Query 1358 T 1358
|
Sbjct 1417 T 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5