BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484582
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2344 0.0
> AT3G27930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 14 growth stages;
Has 35 Blast hits to 35 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10369299-10372438
REVERSE LENGTH=1692
Length=1692
Score = 2344 bits (1269), Expect = 0.0
Identities = 1470/1567 (94%), Gaps = 14/1567 (1%)
Strand=Plus/Plus
Query 1 ATATTCAAACGTGAAGCAAAAGCAGAAGCGACACTATCGCC----GCTCTCAGTAACTAT 56
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 1 ATATTCAAACGTGAAGCAAAAGCAGAAGCGAGACTATCGCCGAGAGCTCTCACTAACTAT 60
Query 57 TG-ATTCATCGAAGAAGCTCTCTCGTTGTCGCAGAATCTCTTCTTCTCCGTTCTAGAGTA 115
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TGAATTCATCGAAGAAGCTCTCTCGTTGTCGCAGAATCTCTTCTTCTCCGTTCTAGAACA 120
Query 116 ATGGGGAATGCTCTGGTCAAAAAAGAACCACCGCCTCCTGTGGTCCTAGTTCCTCCGCTC 175
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 121 ATGGGGAATGCTCTTGTCAAAAAAGAACCACCGCCTCCGGTGGTACTCGTTCCTCCGCTC 180
Query 176 TTTGATTTCCCTCCTCTCTCCGCCCGTACTAGGATGTTGGAATCATCATATAATTTGTTG 235
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTTGATTACCCTCCTCTCTCCGCCCGCACTAGGATGTTGGAATCATCATATAATTTGTTG 240
Query 236 TTTGGGAAGCTTGCATTGAAATGTCTATTTGAGGATTACTTTGAAGAAGCAAAT-AATTT 294
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||
Sbjct 241 TTTGGGAAGCTTGCATTGAGATGTCTATTTGAGGATTACTTTGAAGAAGCTAATCGA-TT 299
Query 295 CTC-GGCGAAGTTTTTGTTGAAGCCTATTGATGATCCTCATGTGGATTTGGTTGCATCTG 353
| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CACGGGC-AAGTTTTTGTTGAAGCCTACTGATGATCCTCATGTGGATTTGGTTGCATCTG 358
Query 354 TATCGGGTGCAGTAGATGGTAGAGCGGATGGAGATTTTGTTGGAAAAGCGGAGTTTCGCT 413
| |||||||| ||||||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 359 TTTCGGGTGCTGTAGATGGTAGAGTGGAAGGAGATTTTGTTGGGAATGCGGAGTTTCGCT 418
Query 414 GGCAAAGTGATGTTGATGATCCTCATACTTTTGTGGACCTCTCTGTGTCAACATCGAATC 473
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 419 GGCAAAGTGATGTTGATGATCCTCATACTTTTGTTGATCTCTCTGTGTCAACCTCGAATC 478
Query 474 CGGTTCTTCTAATGAGGTCTTCTGCTTACTACCCTAAGTATGGGATCGGGGCATTTGCAG 533
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 479 CGGTTCTTCTAATGAGGTCTTCTGCTTACTATCCTAAATATGGAATCGGGGCATTTGCGG 538
Query 534 TCTACCCTTTGATTTCAAAAAAGACTGGAAACTTATCTGAAGAATATAGAATCATGGGGT 593
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 539 TCTACCCTTTGATTTCAAAAATTACTGGAAAATCATCTGAAGAATATAGAATCATGGGGT 598
Query 594 TGAGATATGGCTCAACGAATTTGTCTCTCGGAGCTACTGTCACTCCTTTTACTGCGGATA 653
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 599 TGAGATATGGCTCAACGAATTTGTCTGTCGGAGCTACTGTCACTCCTTTTAGTGCGAATA 658
Query 654 ACGAATCGCCAAAGCAGGCATGGCTTGTAAGCAAGATGGGAAGGT-TTACAGTAGGAGTG 712
|||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 659 ACGAATTGCCAAAGCATGCATGGCTTGTAAGCAAGATGGGAA-GTCTTACAGTAGGAGTA 717
Query 713 CAGTATGAGCCGCTACATGGAAGCGAAGATTTGGCCAAGTACACAGACCTAAGAAACTGG 772
|| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 718 CAATATGAGCCGCTACATGGAAGCAAAGATTTGGCAAAGTACACAGACCCAAGAAACTGG 777
Query 773 AGTTGTGCTGCTGGCTATGGAGTAGGGTCACAAAGCCCCCTGAGTCCTTCGTTTAACATT 832
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 778 AGTTGTGCTGCTGGCTATGGAGTAGGGTCACAAAGCCCCTTGACTCCTTCTTTTAACATT 837
Query 833 GGCATTGAACTAGCAAGAAGCTCTCAGTTTATCGCTACGTTCTACCAACACATCGTGGTA 892
|||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||
Sbjct 838 GGCATTGAACTAGCAAGAAGCTCTCAGTTTATTGCTTCGTTCTACCAACACGTAGTGGTC 897
Query 893 CAAAGACGGGTGAAAAATCCTTTTGAAGAAAACCAAGTAGTTGGAATCACAAACTACATT 952
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 898 CAAAGACGGGTGCAAAATCCTTTCGAAGAAAACCAAGTAGTTGGAATCACAAACTACATT 957
Query 953 GATTTAGGTTTTGAGTTACAATCGAGGGTTGATGATTCCACGACGCCACACAATGCCCCA 1012
||||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 958 GATTTTGGTTTTGAGCTACAATCGAGGGTTGATGATTCCAAGACGCCACCCAATGCCCCA 1017
Query 1013 GATTCTTTATTGCAGATGGCTGCGTCTTGGCAGGCCAATAAGAACTTCTTGCTAAAGGGT 1072
||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1018 GATTCTTTATTGCAGGTGGCTGCGTCTTGGCAGGCCAACAAGAACTTTTTGCTGAAGGGT 1077
Query 1073 AAAGTCGGAGCTCATAGCTCAACATTGTCATTAGCATTCAAGTCGTGGTGGAAACCGTCT 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAAGTCGGAGCTCATAGCTCAACATTGTCATTAGCATTCAAGTCGTGGTGGAAACCGTCT 1137
Query 1133 TTCGCATTCAATATTTCAGCAACAACTAATCATCGCACTGGAAATGTCGAATGTGGGTTT 1192
||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1138 TTCGCATTCAATATTTCAGCAACAACTAATCATAGGACTGGAAATGTCCAATGTGGGTTC 1197
Query 1193 GGTCTCCGTGTTGATAACATAAGAGAAGCCAGTTACCAAAGAGCTGATCCAAACTTTGTA 1252
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGTCTACGTGTTGATAACTTAAGAGAAGCCAGTTACCAAAGAGCTGATCCAAACTTTGTA 1257
Query 1253 ATGCTAACACCGAACAAAGAACATTTAGCTGAAGGGATTGTGTGGAAAATGGGGAAGAGG 1312
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATGCTGACACCGAACAAAGAACATTTAGCTGAAGGGATTGTGTGGAAAATGGGGAAGAGA 1317
Query 1313 CCAATGTATCAAGCCGATGTGGACGCAGAGAATTTCAGTGAACTGCCAAAAGAACTTAGA 1372
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1318 CCAATGTATCAAGCCGATGTGGACGCAGAGAATTTTAGTGAGCTGCCAAAAGAACTTAGA 1377
Query 1373 CCGTCCCAGAAGATTCTCTAAACTAAACCTTTAAtttttttGCACTTTTATCTAGTAGAT 1432
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 1378 CCGTCCCAGAAGATTCTCTAAACTACACCATTAATCTTTTTGCACTTTTATCTAGTAGAT 1437
Query 1433 TTAGATCTCTACCAAGTCAAGTTTTTAATAAGTTCGACGAAAGAAGATAT-ATTTAGTAA 1491
|||||| || |||||||||||| |||||||||||||||||||||||| || | |||| ||
Sbjct 1438 TTAGATATCAACCAAGTCAAGTATTTAATAAGTTCGACGAAAGAAGA-ATTACTTAGGAA 1496
Query 1492 TAACCATTTTTACTCATATGGAGCACAAGTGTTTTGTGTTCAAA-TTAGGAGCGAATTAT 1550
||||||||||||||| ||||||| |||||||||| ||||||||| ||||||| | |||||
Sbjct 1497 TAACCATTTTTACTCTTATGGAGTACAAGTGTTTAGTGTTCAAAATTAGGAGTGGATTAT 1556
Query 1551 CTGGTTT 1557
|||||||
Sbjct 1557 CTGGTTT 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5