BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484586
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28007.1 | Symbols: SWEET4, AtSWEET4 | Nodulin MtN3 family p... 1387 0.0
> AT3G28007.1 | Symbols: SWEET4, AtSWEET4 | Nodulin MtN3 family
protein | chr3:10408092-10409745 REVERSE LENGTH=1019
Length=1019
Score = 1387 bits (751), Expect = 0.0
Identities = 821/854 (96%), Gaps = 8/854 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctcGTT-TTTGTTCTTGCTTCTTGTTCTAGTTCAGATTTGGCTTTTGAA 59
|||| ||| ||||| || |||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 49 TCTCGCTCGCTCTC-TTCTTTGTTCTTGCTCCTTGTTCTAGTTCGGATTTTTCTTTTGAA 107
Query 60 GTGAAATGGTTAACGCTACAGTTGCGAGAAACATTGCCGGCATTTGTGGAAATGTCATCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GTGAAATGGTTAACGCTACAGTTGCGAGAAACATTGCCGGCATTTGTGGAAATGTCATCT 167
Query 120 CCTTGTTCTTGTTCTTATCTCCCATACCTACGTTCATAACCATATACAAGAAGCAAAAGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 168 CCTTGTTCTTGTTCTTATCTCCCATACCTACGTTCATAACCATATACAAGAAGAAAAAGG 227
Query 180 TGGAGGAGTATAAAGCTGACCCATACTTAGCCACGGTTCTAAATTGCGCACTTTGGGTCT 239
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 228 TGGAGGAGTACAAAGCTGACCCATACTTAGCCACGGTTCTAAATTGCGCACTATGGGTCT 287
Query 240 TTTATGGCTTACCAATGGTTAAACCAGATAGTCTCCTTGTGATCACCATAAATGGTACCG 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 288 TTTATGGCTTACCAATGGTTCAACCAGATAGTCTCCTTGTGATCACCATAAATGGTACCG 347
Query 300 GTTTGGCCATTGAGATGGTGTATCTCG-TAATCTTCTTCTTCTTTTCTCCAACTAGTCGC 358
|||| ||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 348 GTTTAGCCATTGAGCTGGTGTATCTCGCTA-TCTTCTTCTTCTTTTCTCCAACTAGTCGC 406
Query 359 AAGGTGAAAGTGGGGCTATGGTTAATAGGAGAGATGCTGTTTGTAGGAATAGTAGCCACA 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 407 AAGGTGAAAGTGGGGCTATGGTTAATAGGAGAGATGGTGTTTGTAGGAATAGTAGCCACA 466
Query 419 TGCACATTGCTATTGTTCCACACACATAACCAGAGATCTCCTTTTGTTGGAATCTTCTGT 478
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 467 TGCACATTGCTATTGTTCCACACACATAACCAGAGATCTTCTTTTGTTGGAATCTTTTGT 526
Query 479 GTCATTTTTGTTAGTCTCATGTATATTGCTCCTCTCACCATCATGAGTAAGGTGATCAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GTCATTTTTGTTAGTCTCATGTATATTGCTCCTCTCACCATCATGAGTAAGGTGATCAAG 586
Query 539 ACCAAAAGTGTGAAGTACATGCCATTTTCTCTCTCACTTGCCAACTTCCTCAACGGTGCC 598
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |
Sbjct 587 ACCAAAAGTGTGAAGTACATGCCATTCTCTCTCTCACTTGCCAATTTCCTCAATGGTGTC 646
Query 599 GTTTGGGTTATTTATGCACTTATTAAATTCGACCTTTTCATTTTGATTGGAAATGGACTT 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 647 GTTTGGGTTATTTATGCACTTATTAAGTTCGACCTTTTCATTTTGATTGGAAATGGACTT 706
Query 659 GGAACAGTATCAGGAGCAGTACAACTTATACTCTATGCTTGCTATTACAAGACAACACCA 718
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGAACGGTATCAGGAGCAGTACAACTTATACTCTATGCTTGCTATTACAAGACAACACCA 766
Query 719 AAAGATGATGAAGATGAAGAGGATCATGAGGAGAATCTTTCTAAGGCTAACTCTCAGTTA 778
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 767 AAAGATGATGAAGATGAAGAAGAT---GAGGAGAATCTTTCTAAGGTTAACTCTCAGTTA 823
Query 779 CAACTTAGTGGCAACAATGGACAAGCTAAACGAGTTTCAGCTTGATTATATGTTTTGGAT 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 824 CAACTTAGTGGCAACAGTGGACAAGCTAAACGAGTTTCAGCTTGATTATATGTTT-GGAT 882
Query 839 TCATGAGTTATGAA 852
||||||| ||||||
Sbjct 883 TCATGAGATATGAA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5