BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484589
Length=3252
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28040.1 | Symbols: | Leucine-rich receptor-like protein ki... 4804 0.0
> AT3G28040.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr3:10435057-10438391 FORWARD LENGTH=3256
Length=3256
Score = 4804 bits (2601), Expect = 0.0
Identities = 3052/3269 (93%), Gaps = 33/3269 (1%)
Strand=Plus/Plus
Query 1 CAAAATGCCATAACTCTCTCTT-CCCT-TATACCAAAAATTAAGCTTTATCTCTCTATCC 58
|||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 4 CAAAATGCCATAACTCTCTCTTCCCCTATATACCAAAAATTAATCTGTATCTCTCTATCC 63
Query 59 ATCAAGAGAGAGCATCAAAATGAGCGATA-AGAGAAGAAACATGATCTCATTTACTCTGT 117
||||||||||||||||| |||| || | | ||||||||| ||||||||||||||||||||
Sbjct 64 ATCAAGAGAGAGCATCACAATGGGC-AAACAGAGAAGAACCATGATCTCATTTACTCTGT 122
Query 118 TTCTCTCATTGACAACGATGTTATCACTCATCAACGGCGATATCGACTCAATCCAACTAA 177
||||| ||||||||| ||||| |||||||||||| ||||||| ||||||||| |||||||
Sbjct 123 TTCTCACATTGACAATGATGTCATCACTCATCAATGGCGATACCGACTCAATTCAACTAA 182
Query 178 ACGACGACGTTTTAGGACTCATCGTCTTCAAATCAGACCTCAACGACCCATTTTCACACC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ACGACGACGTTTTAGGACTCATCGTCTTCAAATCAGACCTCAACGACCCATTTTCACACC 242
Query 238 TTCAATCATGGAACGAAGACGATAACACTCCTTGCTCATGGAGCTACGTCAAATGCAACC 297
|| | ||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 243 TTGAGTCATGGACCGAAGACGACAACACTCCTTGTTCATGGAGTTACGTCAAATGCAACC 302
Query 298 CCAAAACATCTCGAGTCACCGAGCTTTCCCTCGACGGTTTAGCCTTAACCGGAAAAATCA 357
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 303 CCAAAACATCTCGAGTCATCGAGCTTTCTCTCGACGGTTTAGCCTTAACCGGAAAAATCA 362
Query 358 ACCGCGGAATCCAAAAGCTTCAACGTTTAAAAGTACTCTCACTTTCCAACAACAACTTCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACCGCGGAATCCAAAAGCTTCAACGTTTAAAAGTACTCTCACTTTCCAACAACAACTTCA 422
Query 418 CCGGAAACATCAACGCTCTCTC-AACTAACAACAATCTCCAAAAGCTAGATCTTAGCCAC 476
|||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 423 CCGGAAACATCAACGCTCTCTCAAAC-AACAACCATCTCCAAAAGCTAGATCTTAGCCAC 481
Query 477 AACAATCTCTCCGGTCAAATCCCGTCGTCTCTCGGTTCAATCAGCTCCTTGCAACACCTT 536
||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||
Sbjct 482 AACAATCTCTCCGGTCAAATCCCTTCTTCTCTCGGTTCAATAACCTCCTTGCAACACCTT 541
Query 537 GACTTAACCGGAAACTCTTTCTCCGGTACACTCTCTGATGATTTCTTCAACAACTGTTCC 596
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 542 GACTTAACCGGAAACTCCTTCTCCGGTACACTCTCTGACGATTTGTTCAACAACTGTTCC 601
Query 597 TCTCTTAGATATCTGTCTCTGTCTCATAACCATCTTGAAGGTCAAATCCCAAGTACTCTG 656
|||||||||||||| ||||| || || ||||| || ||||||||||||||||||||||||
Sbjct 602 TCTCTTAGATATCTTTCTCTCTCCCACAACCACCTCGAAGGTCAAATCCCAAGTACTCTG 661
Query 657 TTTCAATGCTCTGTTTTGAACAGTCTTAATCTCTCAAGAAACCGTTT-TTCGG-----GT 710
|||| |||||||||||| |||||||| ||||| |||||||||||||| | ||| |
Sbjct 662 TTTCGATGCTCTGTTTTAAACAGTCTCAATCTTTCAAGAAACCGTTTCTCCGGTAACCCT 721
Query 711 AGTTTCGTCTCAGGATTCTGGAGACTTGAGAGGTTAAGAGCTTTAGATCTATCTTCTAAT 770
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGCTTCGTCTCAGGAATCTGGAGACTTGAGAGGTTAAGAGCTTTAGATCTATCTTCTAAC 781
Query 771 TCACTTTCTGGTTCAATACCTTTGGGGATACTCTCTTTGCATAACTTGAAAGAGTTGCAA 830
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 782 TCACTTTCTGGTTCAATACCTTTGGGGATACTCTCTCTACATAACTTGAAAGAGTTGCAA 841
Query 831 TTACAGAGGAATCAGTTCTCTGGATCATTGCCTTCAGATATTGGACTCTGTCCTCATTTA 890
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 842 CTACAGAGGAATCAGTTCTCTGGAGCATTGCCTTCAGATATTGGACTCTGTCCTCATTTA 901
Query 891 AACAGAGTTGATTTGAGTTTCAATCTTTTCTCTGGTGAACTTCCAAGAACTCTTCAGAAG 950
|||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 902 AACAGAGTTGATCTAAGTTCCAATCATTTCTCTGGTGAACTTCCAAGAACTCTTCAGAAG 961
Query 951 CTGAGATCTTTGAACCACTTCGATTTATCGAAGAATTTGCTCTCCGGTGATTTCCCGGCA 1010
|||| |||||| || ||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 962 CTGAAATCTTTAAATCACTTCGATGTATCGAACAATTTGCTCTCCGGTGATTTCCCGCCA 1021
Query 1011 TGGATTGGTGATATGACTGGTTTAGTACACTTGGATTTCTCCAGCAATGAGTTAACTGGG 1070
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1022 TGGATCGGTGACATGACCGGTTTAGTACACTTGGATTTCTCCAGCAATGAGTTAACCGGA 1081
Query 1071 GAGCTTCCTTCTT-TGA-TAGGTAACTTGAGATCTTTAAAGGATCTAATCTTGTCTGAGA 1128
|||||||||||| | | || |||||||||| ||| |||||||||||| |||||||||||
Sbjct 1082 AAGCTTCCTTCTTCT-ATTA-GTAACTTGAGGTCTCTAAAGGATCTAAACTTGTCTGAGA 1139
Query 1129 ACAAACTCTCCGGCGAGATTCCGGAATCTTTGGAATCATGCAAAGGGCTTATGGTTGTTC 1188
||||||||||||||||| | || || ||||||||||||||||||| ||||||| ||||||
Sbjct 1140 ACAAACTCTCCGGCGAGGTACCTGAGTCTTTGGAATCATGCAAAGAGCTTATGATTGTTC 1199
Query 1189 AGCTCAAAGGTAATGGCTTCTCCGGTAGCATTCCTGATGGTTTGTTTGATCTTGCTCTTC 1248
|||| ||||| |||| ||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1200 AGCTTAAAGGCAATGACTTCTCCGGTAACATTCCTGATGGTTTTTTTGATCTTGGTCTTC 1259
Query 1249 AAGAAATGGATTTTTCGGGTAACGGTTTTACCGGTTCGATCCCGAGAGGCTCAAGCAGGC 1308
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1260 AAGAAATGGATTTTTCGGGTAACGGTTTAACCGGTTCGATCCCAAGAGGCTCAAGCAGGC 1319
Query 1309 TTTTTGAGTCACTCAAAAGACTCGATCTTTCGCGCAACAATCTCACTGGAAGTATACCTG 1368
|||| |||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 1320 TTTTCGAGTCACTCATAAGGCTCGATCTTTCGCATAACAGTCTCACTGGAAGTATACCTG 1379
Query 1369 GTGAAATAGGGCTCTTCATCAACATGAGATACCTCAATTTGTCATGGAACCATTTCAACA 1428
||||| |||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1380 GTGAAGTAGGACTCTTCATCCACATGAGATACCTTAATTTATCATGGAACCATTTCAACA 1439
Query 1429 CAAGAGTTCCTCCTGAAATCGAGTTTCTACAGAATTTAATAGTCTTGGATCTTAGGAACA 1488
||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 1440 CAAGAGTTCCTCCTGAAATTGAGTTTCTACAGAACTTAACGGTATTGGATCTTAGGAACA 1499
Query 1489 GCGCGCTGATTGGTTCGGTTCCTGCTGATATATGTGAGTCTCAGAGTCTGCAGATCCTTC 1548
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1500 GTGCACTGATTGGTTCGGTTCCTGCTGATATATGTGAGTCTCAGAGTCTTCAGATACTTC 1559
Query 1549 AGTTGGATGGTAACTCACTAACTGGTTCTATACCGGAAGGAATCGGAAACTGCTCTTCTC 1608
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1560 AACTGGATGGTAACTCACTAACCGGTTCTATACCGGAAGGAATCGGAAACTGCTCTTCTC 1619
Query 1609 TTAAATTGTTGAGTTTGTCTCATAACAATCTTACCGGTCCTATTCCTAAATCTCTTTCAA 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TTAAATTGTTGAGTTTGTCTCATAACAATCTTACCGGTCCTATTCCTAAATCTCTTTCAA 1679
Query 1669 ACTTACAAGAGCTCAAGATTCTAAAGCTAGAGGCCAATAAGCTTAGTGGAGAAATACCGA 1728
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1680 ACTTACAAGAGCTCAAGATTTTAAAGCTAGAGGCTAATAAGCTTAGTGGAGAAATACCGA 1739
Query 1729 AAGAGCTCGGGGAATTACAGAATCTGTTATTGGTTAACGTTTCGTTTAACCGACTCATCG 1788
||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1740 AAGAGCTTGGGGATTTGCAGAATCTGTTATTGGTTAACGTTTCGTTTAACCGACTTATCG 1799
Query 1789 GAAGGTTACCAGTTGA-AGGTGTGTTCCAAAGCTTAGACCAGAGTGCTATTCAAGGAAAC 1847
||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1800 GAAGGTTACCA-TTGGGAGATGTGTTCCAAAGCTTAGACCAGAGTGCTATACAAGGAAAC 1858
Query 1848 CTAGGTATTTGTTCACCATTGTTGAGAGGACCATGTACACTGAATGTTCCAAAGCCTCTT 1907
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1859 CTAGGTATTTGTTCACCGTTGTTGAGAGGTCCTTGTACACTGAATGTTCCAAAGCCTCTT 1918
Query 1908 GTCATTGATCCAAACTCCTACGGGCACGGGAACAAAATGCCGGGAAACCGAGCAAGCAGT 1967
||||| ||||||||||||||||| | |||||||| ||||| ||||||||||||||| ||
Sbjct 1919 GTCATCAATCCAAACTCCTACGGGAATGGGAACAATATGCCTGGAAACCGAGCAAGCGGT 1978
Query 1968 GGTTCTGGAA-AGTTCCACCGCAGAATGTTCCTGAGTGTTTCAGTGATTGTAGCAATATC 2026
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 GGTTCTGGAACA-TTCCACCGCAGAATGTTCCTGAGTGTTTCAGTGATTGTAGCAATATC 2037
Query 2027 AGCCGCTATACTCATCTTTTCCGGAGTCATAATTATAACGTTGCTTAACGCGTCTGTGAG 2086
||| || || |||||||| || |||||||||||||||||| |||||||||||||||| ||
Sbjct 2038 AGCTGCGATTCTCATCTTCTCTGGAGTCATAATTATAACGCTGCTTAACGCGTCTGTTAG 2097
Query 2087 AAGACGGCTTGCATTTGTAGACAACGCGTTGGAGAGCATTTTCTCGGGGTCTTCGAAATC 2146
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2098 AAGACGGCTTGCATTTGTAGACAATGCGTTGGAAAGCATTTTCTCGGGGTCTTCGAAATC 2157
Query 2147 AGGAAGAAGCTTAATGATGGGTAAACTTGTTCTGTTAAACTCAAGAACTTCACGTTCCTC 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 AGGAAGAAGCTTAATGATGGGTAAACTTGTTCTGTTAAACTCAAGAACTTCACGTTCCTC 2217
Query 2207 GTCTTCGTCTCAAGAGTTCGAAAGAAACCCGGATTCTCTTCTGAACAAAGCTTCAAGAAT 2266
|||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||
Sbjct 2218 GTCTTCGTCTCAAGAGTTCGAAAGAAACCCAGAGTCACTTCTCAACAAAGCTTCAAGAAT 2277
Query 2267 TGGTGAAGGAGTTTTTGGAACAGTGTACAAGGCACCTTTAGGAGAACAGGGGAGAAACTT 2326
|||||||| |||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 2278 CGGTGAAGGGGTTTTTGGAACAGTCTACAAAGCACCTTTAGGAGAGCAAGGGAGAAACTT 2337
Query 2327 GGCTGTTAAGAAACTTGTCCGGTCGCCGATTCTTCAAAACCTAGAAGATTTTGATCGCGA 2386
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2338 GGCTGTTAAGAAACTTGTCCCGTCTCCGATTCTTCAAAACCTAGAAGATTTTGATCGCGA 2397
Query 2387 AGTTCGGATATTGGCGAAAGCGAAGCACCCTAATCTAGTATCGATCAAAGGGTATTTCTG 2446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 AGTTCGGATATTGGCGAAAGCGAAGCACCCTAATCTAGTATCGATCAAAGGGTATTTCTG 2457
Query 2447 GACACCGGAGTTGCATCTTCTGGTATCAGAATACATACCAAACGGAAACTTGCAGTCCAA 2506
||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 2458 GACACCGGACTTGCATCTTCTGGTATCAGAATACATCCCCAATGGAAACTTGCAGTCCAA 2517
Query 2507 GTTACACGAACGAGAATCCTCAACACCGCCTCTTTCGTGGGACGTAAGATACAGAATCAT 2566
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2518 GTTACACGAACGAGAACCCTCAACACCGCCTCTTTCTTGGGACGTAAGATACAAAATCAT 2577
Query 2567 CCTCGGTACGGCCAAAGGACTCGCTTATCTCCACCATACATTCCGTCCAACAACCATCCA 2626
||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2578 CCTCGGTACAGCTAAAGGACTCGCTTATCTCCATCACACATTCCGTCCAACAACCATCCA 2637
Query 2627 CTTCAACCT-AAAGCCAACCAACATCCTCCTCGACGAGAAAAACAACCCGAAAATCTCCG 2685
||||||||| ||| || || |||||||||||||||||||||||||||||||||||||| |
Sbjct 2638 CTTCAACCTGAAA-CCGACAAACATCCTCCTCGACGAGAAAAACAACCCGAAAATCTCTG 2696
Query 2686 ATTTCGGGCTCTCTCGTCTCCTAACAACACAAGACGGGAACACAATGAACAACAACAGAT 2745
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2697 ATTTCGGGCTATCTCGTCTCCTAACAACACAAGACGGGAACACAATGAACAACAACAGGT 2756
Query 2746 TTCAAAACGCTTTAGGCTACGTAGCGCCTGAACTAGAGTGTCAGAACTTAAGGGTCAACG 2805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2757 TTCAAAACGCTTTAGGCTACGTAGCGCCTGAACTAGAGTGTCAGAACTTAAGGGTCAACG 2816
Query 2806 AGAAATGCGATGTTTACGGGTTCGGGGTTTTGATACTCGAACTTGTTACTGGTCGGAGAC 2865
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2817 AGAAATGCGATGTTTACGGGTTCGGGGTTTTGATACTCGAACTGGTGACTGGTCGGAGAC 2876
Query 2866 CTGTGGAGTACGGTGAAGACAGCTTTGTGATACTTAGCGACCATGTTCGAGTTATGTTAG 2925
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2877 CGGTGGAGTATGGTGAAGACAGCTTTGTGATACTTAGTGACCATGTTCGAGTTATGTTAG 2936
Query 2926 AACAAGGGAATGTGTTGGAGTGTATTGATCCTGTGATGGAGGAACAATACTCTGAAGATG 2985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2937 AACAAGGGAATGTGTTGGAGTGTATTGATCCTGTGATGGAGGAACAATACTCTGAAGATG 2996
Query 2986 AGGTTTTGCCTGTCCTGAAACTTGCTCTTGTCTGTACTTCACAAATACCTTCGAATCGGC 3045
|||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 2997 AGGTTTTGCCTGTCTTGAAACTTGCTCTGGTCTGTACTTCTCAGATACCTTCGAATCGGC 3056
Query 3046 CAACAATGGCGGAGATTGTTCAGATCTTGCAAGTCATCAATTCTCCTGTTCCTCACCGGA 3105
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 3057 CAACAATGGCCGAGATTGTTCAGATCTTGCAGGTCATCAATTCTCCTGTTCCCCACCGTA 3116
Query 3106 TCATGGATAGTTTCTAAAAATCTTTGTGTTA--GTTAAtttttcattagttttttttttt 3163
|||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||
Sbjct 3117 TCATGGATAGTTTCTAAACATCTTTGTGTTATAGTTAATTTTTCATTAGCTTTTCTTTTT 3176
Query 3164 gcaattttttcgttgtctttgtcttttttttttttttttttggcttttGTGTAGAGATTG 3223
|||| |||| | |||||| |||||||| || | | |||| ||||||||||||
Sbjct 3177 GCAAATTTTACTTTGTCTGTGTCTTTTGTTGTGGT--------CTTT-GTGTAGAGATTG 3227
Query 3224 CTTATTTCACAATGCTACGCTTTCTCTTC 3252
||||||||||||||||||||||||| |||
Sbjct 3228 CTTATTTCACAATGCTACGCTTTCTGTTC 3256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161788391175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5