BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484599
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28140.1 | Symbols: | RNA ligase/cyclic nucleotide phosphod... 1199 0.0
AT5G40190.1 | Symbols: | RNA ligase/cyclic nucleotide phosphod... 531 5e-150
> AT3G28140.1 | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase
family protein | chr3:10470401-10471216 FORWARD
LENGTH=816
Length=816
Score = 1199 bits (649), Expect = 0.0
Identities = 739/781 (95%), Gaps = 12/781 (2%)
Strand=Plus/Plus
Query 1 TCTTAGGGTTTCTCTCTTCACCAAAAACTCCTAAATCTCTCTCTCAGATCGTCACTACCC 60
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TCTCAGGGTTTCTCGGTTCACCAAAAACTCCTAAATCTCTCTCTCAGATCGTCACTACCC 100
Query 61 TTTTCAATTCCATCCTCAATCTTCAAAATCCCCAAACGAAATCAATCAAAAGATGTCGTC 120
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 101 TTTTCAATTCCATCCTCAATCTTCAAAATTCCCAAACGAAATCAA-CAAAAGATGTCG-C 158
Query 121 ACAAGGCTACGCAATCGAGCTCTACTTCGATCCATCACTCGAGAACCAAGTCTTGAAAGC 180
| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 159 A-A-GGCTACGCAATCGAGCTCTACTTCGATCCAGCACTCGAGAACCAAGTCTTGAAAGC 216
Query 181 TTGGAACGTCTTCGCTCGTCGTCAAATCAGTACAAACCTAATCAACAACGAGTCTCGTCC 240
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 217 TTGGAACGTCTTCGCTCGTCGTCAAATCAGTACATATCTAATCAACAACGAGTCTCGTCC 276
Query 241 ACACATAACTTTATTCTCA--T-CTTCATTCATCGATTCAACAAAGCTTGAACCAATCTT 297
||||||||| ||||||||| | |||||| |||||||||||||||||||||||||||| |
Sbjct 277 ACACATAACCTTATTCTCAACTACTTCATCCATCGATTCAACAAAGCTTGAACCAATCAT 336
Query 298 GAAATCATTCTCATCGAAACAAGAACCAATCGCTCTCTCTTTCTCTTCAATTGGAAGCTT 357
|||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 337 CAAATCATTCTCATCTAAACAAGAACCAATCTCACTCTCTTTCTCTTCAATAGGAAGCTT 396
Query 358 TTCTAGTGACAACAATGCTCTGTTTCTTTCGCCGACACCGTCTCTTTCGCTTCTTCAGCT 417
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 397 TTCTAGTGACGACAATGCTCTGTTTCTTTCGCCGACGCCGTCTCTTTCGCTTATTCAGCT 456
Query 418 TCAGGTTCAGTTATGTGAAGTGATTAAGAAAGAAGGGTTTGAGATTGGTGAAGAGTATCG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TCAGCTTCAGTTATGTGAAGTGATTAAGAAAGAAGGGTTTGAGATTGGTGAAGAGTATCG 516
Query 478 TGTTGATTCTTGGGTTCCGTTTTGT-CATGTGGCTATTGATGTTCCTAAGTCACGTATCT 536
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 517 TGTTGATTCTTGGGTTCCGTTTTGTTC-TGTGGCTGTTGATGTTCCTAAGTCACGTATCT 575
Query 537 CTGAAGGGTTTTTGGTTTTGAGAGATTTGAAGCTTCCTGTGAATGGTTATGCTATGGATA 596
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 576 CTGAAGGGTTTTTGGTTTTGAGAGATTTGAAGCTTCTTGTTTATGGTTATGCTATGGATA 635
Query 597 TTGGTCTTGTTAAGTTTTCTCCTGTTCGTGAAGTCTTCTCTTTTGGTCTTGGTAACAATT 656
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 636 TTGGTCTTGTTGAGTTTTCTCCTGTTCGTGAAGTTTTCTCTTTTGGTCTTGGTAACAATT 695
Query 657 TGGAGTCTTGATATGAAAATGTTTAGCTTTGAGTTAGTAACAATCTGATTATGTAATTCC 716
|||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 696 TGGAATCTTGATATGAA--TGTTTAGCTTTCAGCTAGTAACAATCTGATTATGTAATTCC 753
Query 717 TTTGGTTTTAGTTAACAAAAGTTTCGAGCTTGATGGAACAGTATAGAAGCAATTATGTTT 776
|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 754 TTTGGTTT-AGTTGACAAAAGTTTCGAGCTTGATGGAACATTATAGAAGCAATTATGTTT 812
Query 777 A 777
|
Sbjct 813 A 813
> AT5G40190.1 | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase
family protein | chr5:16069177-16069948 REVERSE
LENGTH=772
Length=772
Score = 531 bits (287), Expect = 5e-150
Identities = 477/565 (84%), Gaps = 28/565 (5%)
Strand=Plus/Plus
Query 118 GTCACAAGGCTACGCAATCGAGCTCTACTTCGATCCATCACTCGAGAACCAAGTCTTGAA 177
|||| ||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct 102 GTCAGAAGGCTACGCAATCGAGCTATACTTCGATCCAGCACTCGAAAACCAAGTATTGAA 161
Query 178 AGCTTGGAACGTCTTCGCTCGTCGTCAAATCAGTA-CAAACCTAATCAACAAC-GAGTCT 235
||| ||||||||||||||||| ||||||||||||| |||| | |||||| || ||||||
Sbjct 162 AGCATGGAACGTCTTCGCTCGCCGTCAAATCAGTACCAAA-TTGATCAAC-ACTGAGTCT 219
Query 236 CGTCCACACATAACTTTATTCT-CATCTTCATTCATCGATTCAACAAAG-CTTGAA-CCA 292
|||||||||||||| | |||| || | || ||| |||||||||| || || ||| ||
Sbjct 220 CGTCCACACATAACACTCTTCTCCA-CCTCCTTCTTCGATTCAAC-GAGACTCGAATCC- 276
Query 293 ATC-TTGAAATCATTC-TCATCGAAACAAGAACCAATCGCTCTCTCTTTCTCTTCAATTG 350
|| | ||| | ||| | ||| || |||||||||||| | |||| |||||| | || |
Sbjct 277 GTCATCAAAAAC-TTCGT-ATCCAAGCAAGAACCAATCTCGATCTCGTTCTCTACTATCG 334
Query 351 GAAGCTTTTCTAGTGACAACAATGCT-CTGTTTCTTTCGCCGACACCGTCTCTTTCGCTT 409
| ||||| ||||| |||||||| | | |||||||| || ||||| |||||||| ||||||
Sbjct 335 GTAGCTTCTCTAGCGACAACAACG-TACTGTTTCTATCTCCGACTCCGTCTCTATCGCTT 393
Query 410 CTTCAGCTT-CAGGTTCAGTTATGTGA-AGTGATT-AAGAAAGAAGGGT-TTGAGATTGG 465
|||||| || ||| |||||||||||| | || || ||||||||| | |||| |||||
Sbjct 394 CTTCAG-TTGCAGACTCAGTTATGTGATA-TG-TTGAAGAAAGAA-TCTGTTGACATTGG 449
Query 466 TGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTCATGTGGCTATTGATGTTCCTAA 525
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 450 TGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCCGTGGCTCTTGATGTTCCTAA 509
Query 526 GTCACGTATCTCTGAAGGGTTT-T-TGGTTTTGAGAGATTTGAAGCTTCCTGTGAATGGT 583
||| ||||| |||| || ||| | || | |||||||||||||||||||| |||||||||
Sbjct 510 GTCTCGTATGGCTGA-GGCTTTCTCTG-TGTTGAGAGATTTGAAGCTTCCGGTGAATGGT 567
Query 584 TATGCTATGGATATTGGTCTTGTTAAGTTTTCTCCTGTTCGTGAAGTCTTCTCTTTTGGT 643
|||| |||||| |||||||| ||| |||||||||||||||||||||||||||| ||| |
Sbjct 568 TATGGTATGGAGATTGGTCTCGTTGAGTTTTCTCCTGTTCGTGAAGTCTTCTCATTTCCT 627
Query 644 CTTGGTAACAATTTGGAGTCTTGAT 668
|||||||||| ||||||||||||||
Sbjct 628 CTTGGTAACACTTTGGAGTCTTGAT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5