BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484602
Length=2423
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28180.1 | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 | Cellu... 3362 0.0
> AT3G28180.1 | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 | Cellulose-synthase-like
C4 | chr3:10505829-10509239 FORWARD LENGTH=2475
Length=2475
Score = 3362 bits (1820), Expect = 0.0
Identities = 2089/2218 (94%), Gaps = 21/2218 (1%)
Strand=Plus/Plus
Query 223 TCTCTCTTTCTTTGTCATTCATGGCTCCAAATTCAGTAGCAGTGACAATGGAGAAGCCAG 282
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCTCTGTTTCTTTATCATTCATGGCTCCAAATTCAGTAGCAGTGACAATGGAGAAGCCAG 321
Query 283 ACAACTTCTCTTTACTAGAAATCAACGGTTCAGATCCATCCGCATTCCCCGACAAGCGTA 342
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||
Sbjct 322 ACAACTTCTCTTTACTAGAGATCAACGGCTCAGATCCATCCTCATTCCCCGACAAACGTA 381
Query 343 AATCCATCAGTCCAAAGCAATTCTCATGGTTCCTCCTTCTCAAAGCTCATAGAGTCGTCT 402
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct 382 AATCCATCAGTCCAAAACAATTCTCATGGTTCCTTCTTCTCAAAGCTCATAGACTCATCT 441
Query 403 CGTGTCTCTCGTGGCTCGTATCTTCGGTTAAAAAGCGAATAGCTTTCTCCGCGAAGAACA 462
|||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct 442 CGTGTCTCTCGTGGCTAGTCTCTTCGGTTAAAAAGCGAATCGCGTTCTCCGCGAAGAACA 501
Query 463 TTAACGAAGAAGAAGATCCTAAAAGCAGAGGAAAACAAATGTACAGATTCATCAAAGCTT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TTAACGAAGAAGAAGATCCTAAAAGCAGAGGAAAACAAATGTACAGATTCATCAAAGCTT 561
Query 523 GTCTTGTTATCTCCATAATTGCCTTGTCTATAGAAATCGTCGCGCATTACAAGAAATGGA 582
||||||| |||||||| ||||||||||| ||||||||||| || |||| |||||||||||
Sbjct 562 GTCTTGTCATCTCCATTATTGCCTTGTCCATAGAAATCGTTGCACATTTCAAGAAATGGA 621
Query 583 ATCTTGATCTTATAAACCGACCTTCGTGGGAGGTTTATGGCCTTGTCGAATGGTCTTACA 642
|||||||||| || |||||||| || ||||||||||| || |||||||||||||| ||||
Sbjct 622 ATCTTGATCTCATTAACCGACCGTCTTGGGAGGTTTACGGGCTTGTCGAATGGTCGTACA 681
Query 643 TGGCTTGGCTTTCGTTTCGATCCGATTATATTGCTCCTCTTGTCATAAGTCTCTCAAGAT 702
|||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 682 TGGCTTGGCTCTCGTTTCGATCCGATTACATCGCTCCTCTTGTCATCAGTCTCTCCAGAT 741
Query 703 TCTGCACTGTCCTCTTCTTGATCCAGTCTCTTGATCGGTTAGTACTCTGTTTTGGTTGCT 762
|||||||||| ||||| ||||| |||||||||||||||||||| |||||| | |||||||
Sbjct 742 TCTGCACTGTACTCTTTTTGATTCAGTCTCTTGATCGGTTAGTCCTCTGTCTCGGTTGCT 801
Query 763 TCTGGATCAAATTTAAAAAGATCGAACCTAAGCTCAAAGAAGAATCTATCGATTTGGAAG 822
| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 802 TTTGGATCAAATTTAAAAAGATCGAACCTAAGCTCACCGAAGAATCTATCGATTTAGAAG 861
Query 823 ATCCCTCCAGTTTCCCAATGGTCCTTGTTCAGATCCCAATGTGCAACGAACGAGAGGTAT 882
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 862 ACCCCTCCAGTTTCCCAATGGTCCTTATTCAGATCCCAATGTGCAACGAACGAGAGGTGT 921
Query 883 ATGAACAATCAATAGGAGCAGCATCACAACTTGATTGGCCAAAAGATAGGATCTTAATTC 942
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 922 ATGAACAATCAATAGGAGCAGCTTCACAACTTGATTGGCCAAAAGATAGGATCTTAATTC 981
Query 943 AAGT-TCTAGACGATTCAGACGATCCAAATTTACAACTTTTGATCAAAGAAGAAGTATCG 1001
|||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 982 AAGTAT-TAGATGATTCAGACGATCCAAATTTACAGCTTTTGATCAAAGAAGAAGTATCG 1040
Query 1002 GTTTGGGCCGAAAAAGGCGTAAACATAATTTATC-GGCATAGGTTGATCAGAACTGGTTA 1060
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1041 GTTTGGGCCGAAAAAGGCGTAAACATAATTTA-CAGGCATAGGTTGATCAGAACTGGTTA 1099
Query 1061 CAAAGCTGGGAATTTGAAATCAGCCATGACTTGTGACTACGTTAAAGATTACGAGTTCGT 1120
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1100 CAAAGCTGGCAATTTGAAATCAGCCATGACTTGTGATTACGTTAAAGATTACGAGTTTGT 1159
Query 1121 TACTATCTTCGACGCAGATTTCACACCAAATCCTGATTTCCTCAAGAAGACTGTTCCTCA 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GACTATCTTCGACGCAGATTTCACACCAAATCCTGATTTCCTCAAGAAGACTGTTCCTCA 1219
Query 1181 TTTCAAGGGAAATCCAGAGCTAGGACTGGTCCAAGCAAGGTGGTCATTCGTGAACAAAGA 1240
||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1220 TTTCAAGGGTAATCCAGAGCTAGGGTTGGTCCAAGCAAGGTGGTCATTTGTGAACAAAGA 1279
Query 1241 TGAGAATCTCCTCACAAGGCTACAAAACATAAACTTATGCTTCCACTTCGAAGTAGAACA 1300
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1280 TGAGAATCTCCTCACGAGGCTACAAAACATAAACTTATGTTTCCACTTCGAAGTAGAACA 1339
Query 1301 ACAAGTGAACGGTGTGTTTCTCAACTTT-TTCGGTTTCAATGGAACCGCTGGAGTCTGGA 1359
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||
Sbjct 1340 ACAAGTGAACGGTGTGTTTCTCAA-TTTCTTCGGATTCAATGGAACCGCTGGAGTATGGA 1398
Query 1360 GAATCAAGGCATTGGAAGAATCCGGCGGGTGGCTCGAGAGAACGACTGTGGAAGATATGG 1419
| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1399 GGATCAAGGCATTGGAAGAATCCGGCGGATGGCTCGAGAGAACCACCGTGGAAGATATGG 1458
Query 1420 ATATCGCGGTTAGAGCGCATCTTAACGGCTGGAAATTTATTTACCTCAATGATGTTGAAG 1479
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1459 ATATCGCGGTTAGAGCGCATCTCAACGGCTGGAAGTTTATTTACCTTAATGATGTTGAAG 1518
Query 1480 TCACTTGTGAGTTGCCTGAGTCTTATGAAGCTTACAAGAAGCAACAACATCGTTGGCATT 1539
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TCACTTGCGAGTTGCCAGAGTCTTATGAAGCTTACAAGAAGCAACAACATCGTTGGCATT 1578
Query 1540 CGGGTCCTATGCAGCTGTTCCGGTTATGCCTTCCTTCCATAATCAAATCAAAGATATCGG 1599
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1579 CCGGTCCTATGCAGCTGTTCCGGTTATGCCTTCCTTCAATTATCAAATCAAAGATATCGG 1638
Query 1600 TTGGGAAGAAGGCGAATTTGATCTTCCTTTTCTTTCTTCTAAGGAAGCTTATTCTACCTT 1659
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1639 TTTGGAAGAAGGCGAATTTGATCTTCCTTTTCTTTCTTCTAAGGAAGCTTATTCTACCAT 1698
Query 1660 TTTACTCATTCACACTCTTTTGCATCATACTTCCATTGACAATGTTCATACCCGAAGCCG 1719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1699 TTTACTCATTCACACTCTTTTGCATTATACTTCCATTGACAATGTTCATACCCGAAGCCG 1758
Query 1720 AGCTTCCGTTGTGGATCATCTGTTATGTTCCTATCTTCATTTCGCTTCTCAACATTCTCC 1779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1759 AGCTTCCGTTGTGGATCATCTGCTATGTTCCTATCTTCATTTCGCTTCTCAACATTCTCC 1818
Query 1780 CGTCGCCTAAATCTTTCCCTTTCTTAGTCCCTTACCTCCTTTTCGAAAACACTATGTCGA 1839
|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1819 CGTCACCTAAATCTTTCCCTTTCTTAGTCCCTTACCTTCTTTTCGAAAACACAATGTCAA 1878
Query 1840 TAACCAAGTTCAACGCCATGATCTCCGGGCTATTCCAGCTCGGATCGGCTTACGAGTGGG 1899
||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||
Sbjct 1879 TAACCAAGTTCAACGCCATGATCTCCGGGCTGTTTCAGTTTGGATCGGCTTACGAGTGGG 1938
Query 1900 TTGTGACAAAGAAAACCGGGAGATCATCCGAATCCGACTTGCTAGCATTTGCTGAAAAGG 1959
||||||| |||||||||||||||||||| || ||||| |||||||| |||||||||||||
Sbjct 1939 TTGTGACGAAGAAAACCGGGAGATCATCGGAGTCCGATTTGCTAGCGTTTGCTGAAAAGG 1998
Query 1960 AAGAGAAGTTGCATAGGAGAAACTCGGAGTCCGGGTTGGAGCTTCTTAGCAAACTTAAGG 2019
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1999 AAGAGAAGTTGCATAGGAGAAACTCGGAGTCAGGTTTGGAGCTTCTGAGCAAACTTAAGG 2058
Query 2020 AGCAAGAGACCAACCTTTTAGCGCAAGAAACCGTGAAGAAGAGCCTTGGAGGGCTAATGA 2079
|||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2059 AGCAAGAGACAAATCTTGTAGGGCAAGAAACCGTGAAGAAGAGCCTTGGAGGGCTAATGA 2118
Query 2080 GGCCTAAGAACAAGAAAAAGACGAACATGGTGTTCAAGAAAGAGCTTGGGCTTGCTTTCT 2139
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2119 GGCCGAAGAACAAGAAGAAGACGAACATGGTGTTCAAGAAAGAGCTCGGGCTTGCGTTCT 2178
Query 2140 TGCTGCTAACCGCAGCTGCAAGGAGCTTTCTATCGGCGCACGGTCTTCACTTCTACTTCT 2199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2179 TGCTGCTAACCGCAGCTGCAAGGAGCTTTCTATCGGCGCACGGTCTTCACTTCTACTTTT 2238
Query 2200 TGCTGTTTCAGGGACTGTCTTTCTTAGTTGTAGGGTTGGATTTGATCGGAGAACAGATCA 2259
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2239 TGTTGTTTCAGGGACTGTCTTTCTTGGTTGTAGGGTTGGATTTGATCGGAGAACAGATCA 2298
Query 2260 GCTAGACTCACACTAAATCAAGACAGAGAACAAGGAAACAAATACCGtttatattcgcta 2319
||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2299 GCTAGACACACACAAAACCAAGACAGAGAACAAGGAAAAAAATACCGTTTATATTCACTA 2358
Query 2320 tttttt------------a--ttcttttccctttcttatatgtgggttttatacataatt 2365
|||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 2359 TTTTTTTGTTTGTTTTTTAAATTCTTTTCCCTTT-TTATATGTGGGTTTTATACATAATT 2417
Query 2366 ttcAAGAACTTATAATGTCCAGTTTCAGATAAATGAATTGAAACGAATTTGTTATATG 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2418 TTCAAGAACTTATAATGTCCAGTTTCAGATAAATGAATTGAAACGAATTTGTTATATG 2475
Score = 274 bits (148), Expect = 3e-72
Identities = 204/229 (89%), Gaps = 11/229 (5%)
Strand=Plus/Plus
Query 1 AGTTGGTTCACTTGAGCACATGATCCTCGtctctctttttttctctctctctctcAATCA 60
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1 AGTTGGTTCACTTCAGCACATGATCCTCGTCTCTC----TTTCTTTCTCTCTCTCAATCA 56
Query 61 CAAGTTTCAGTTACA-AGCTGAA-CCAAAGTATCTCAGATTCTGATC---T--GATTACT 113
||||||||||||||| ||||||| ||||||||||||| ||||||||| | || |||
Sbjct 57 CAAGTTTCAGTTACACAGCTGAACCCAAAGTATCTCACATTCTGATCTAATCAGAACACT 116
Query 114 GTTTTGTCTGTGAAACAAAAACAAACGATCCTGTTTTTATGGAAAATTTAATGAAACAGT 173
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTTTTGTCTGTGTAACATAAACAAACGATCCTGTTTTTATGGAAAATTTAATGAAACAGT 176
Query 174 GACGACTCAAATCCTCATCTTTATAATGACAAACATTTCATAGTACCAA 222
||||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 177 GACGATTCTTCTACACTTCTTTATAATGACAAACATTTCATAGTACCAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120330706365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5