BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484603
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28200.1 | Symbols: | Peroxidase superfamily protein | chr3... 1661 0.0
AT5G40150.1 | Symbols: | Peroxidase superfamily protein | chr5... 549 2e-155
> AT3G28200.1 | Symbols: | Peroxidase superfamily protein | chr3:10518070-10519166
FORWARD LENGTH=1097
Length=1097
Score = 1661 bits (899), Expect = 0.0
Identities = 1007/1056 (95%), Gaps = 19/1056 (2%)
Strand=Plus/Plus
Query 1 ctcttctcaacaatggcttcactcaaatctctctccctcctcttcctcttcttcttcaca 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTCTTCTCAACAATGGCTTCACTCAAATCTCTCTTCCTCCTCTTCCTCTTCTTCTTCACA 60
Query 61 gctcaATCTCGCTTAACCACAAACTTCTACTCAAAGACATGCCCAAGATTCCTCGACAT- 119
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GCTCAATCTCGCTTAACCACAAACTTCTACTCAAAAACATGCCCAAGATTCCTCGACATC 120
Query 120 AGTCCGTGACACAATCACAAACAAACAAATCACAAATCCAACCACCGCAGCCGCCGTTAT 179
| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 121 A-TCCGTGACACAATCACAAACAAACAAATCACTAATCCCACCACCGCAGCCGCCGTTAT 179
Query 180 CCGTCTCTTCTTCCACGATTGTTTCCCTAACGGTTGCGACGCCTCCGTCCTCCTCTCCTC 239
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 180 CCGTCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACGCCTCCGTCCTCATCTCCTC 239
Query 240 CACCGCCTTCAACACCGCAGAACGTGACTCCTCCATCAACCTCTCACTCCCCGGAGATGG 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 240 CACCGCCTTCAACACCGCAGAACGTGACTCTTCCATCAACCTCTCACTCCCCGGAGACGG 299
Query 300 CTTCGACGTCATTGTCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCGACGTCATTGTCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTC 359
Query 360 TTGTTCCGACATAATCTCTGTCGCAACACGTGATCTTTTGATCACCGTCGGTGGTCCTTA 419
||| || ||||| ||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 360 TTGCTCAGACATCATCTCCGTCGCAACACGTGATCTTCTAATCACCGTCGGTGGTCCTTA 419
Query 420 CTACGACGTTTTCCTCGGCCGTCGTGATTCAAGAACTTCTAAATCTTCTCTTTTAACCGA 479
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 CTACGACGTTTTCCTCGGCCGTCGTGATTCAAGAACGTCGAAATCTTCTCTTTTAACCGA 479
Query 480 TCTTCTTCCTCTTCCTTCTACACCAATCTCTAAAATCATTCAACAGTTTGAATCAAAAGG 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTCTTCCTCTTCCTTCCACACCAATCTCTAAAATCATTCAACAGTTTGAATCAAAAGG 539
Query 540 TTTCAATGTTCAAGAAATGGTTGCTCTTAGTGGAGCACATTCTATAGGGTTTTCACATTG 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTCACTGTTCAAGAAATGGTTGCTCTTAGTGGAGCACATTCTATAGGGTTTTCACATTG 599
Query 600 TAAAGAGTTTGTGGGTCAGGTGGGTCGGAATAATACCGGGTATAACCCGAGATTCGCGGT 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 TAAAGAGTTTGTGGGTCGGGTGGGTCGGAATAATACCGGGTATAACCCGAGATTCGCAGT 659
Query 660 GGCTTTGAAGAAAGCTTGTGCTAATTACCCTAAAGATCCGACTATTTCTGTGTTTAATGA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GGCTTTGAAGAAAGCTTGTGCTAATTACCCTAAAGATCCGACTATCTCTGTGTTTAATGA 719
Query 720 TATTATGACTCCTAATAAGTTTGATAATATGTATTATCAGAATCTTAAAAAGGGTCTTGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATTATGACTCCTAATAAGTTTGATAATATGTATTATCAGAATCTTAAAAAGGGTCTTGG 779
Query 780 GTTACTTGAATCGGATCATGGGTTATATTCTGACCCGAGAACCAGA-ACTTTTGTTGATC 838
||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||
Sbjct 780 GTTACTTGAATCGGATCATGGATTATATTCTGACCCTAGAACCAGATA-TTTTGTTGATC 838
Query 839 TTTATGCTAAGAATCAAGATCTGTTTTTCAAAGATTTTGCTAGAGCTATGCAGAAGTTGA 898
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 TTTATGCTAAGAATCAAGATCTGTTTTTCAAAGATTTTGCTAAAGCTATGCAGAAGTTGA 898
Query 899 GTCTTTATGGTATAAAGACTGGTAGAAGAGGAGAGATCCGAAGAAGGTGTGATGCTATTA 958
|||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 GTCTTTTTGGTATACAGACTGGTAGAAGAGGAGAGATCCGAAGAAGGTGCGATGCTATTA 958
Query 959 ATTGAGTTTATGTTT--A-TT-Attt--ttttt---t------GGATTGTGAATCTTCTG 1003
||||||||||||||| | || |||| ||||| | |||||||||||||||||
Sbjct 959 ATTGAGTTTATGTTTTTAATTTATTTAATTTTTGGGTTATATTGGATTGTGAATCTTCTG 1018
Query 1004 AGTAATTACACTCATATGTTTTTGTGTAATGTAAAA 1039
||| ||||||||||||||||||||||||||||||||
Sbjct 1019 AGTTATTACACTCATATGTTTTTGTGTAATGTAAAA 1054
> AT5G40150.1 | Symbols: | Peroxidase superfamily protein | chr5:16059509-16061043
REVERSE LENGTH=1535
Length=1535
Score = 549 bits (297), Expect = 2e-155
Identities = 699/890 (79%), Gaps = 39/890 (4%)
Strand=Plus/Plus
Query 85 TTCTACT-CAAAGACATGCCC-AAGATTCCTCGACA-TAGTCCGTGACACAATCACAAAC 141
||||||| |||| ||||||| || ||||||||||| || |||| || || ||||| |||
Sbjct 413 TTCTACTCCAAA-TCATGCCCTAA-ATTCCTCGACATTA-TCCGCGAAACCATCACCAAC 469
Query 142 AAACAAATCACAAATCCAACCACCGCAGCCGCCGTTATCCGTCTCTTCTTCCACGATTGT 201
||||| ||| ||| |||||| ||||| ||||| | | |||| |||||||||||||| |||
Sbjct 470 AAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGT 529
Query 202 TTCCCTAACGGTTGCGACGCCTCCGTCCTCCTCTCCTCCACCGCCTTCAACACCGCAGAA 261
||||| ||||| |||||||||||||||||| | || |||||||| ||||||||||| |||
Sbjct 530 TTCCCCAACGGCTGCGACGCCTCCGTCCTCGTTTCTTCCACCGCTTTCAACACCGCCGAA 589
Query 262 CGTGACTCCTCCATCAACCTCTCACTCCCCGGAGATGGCTTCGACGTCA-TTGTCCGAGC 320
|| || || || ||||| ||||| ||||||||||| || |||||||| | | |||||||
Sbjct 590 CGCGATTCATCAATCAATCTCTCTCTCCCCGGAGACGGATTCGACGT-AGTAATCCGAGC 648
Query 321 CAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTCTTGTTCCGACATAATCTCTGT 380
||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| | ||
Sbjct 649 TAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGCCGT 708
Query 381 CGCAACACGTGATCTTTT-GATCACCGTCGGTGGTCCTTACTACGACGTTTTCCTCGGCC 439
||| ||||||||| | | | ||||||||||| ||||||||||| | | ||||||||
Sbjct 709 CGCGGTACGTGATCTCCTCG-TAACCGTCGGTGGACCTTACTACGAAATCTCCCTCGGCC 767
Query 440 GTCGTGATTCAAGAACTTCTAAATCTTCTCTTTTAACCGATCTTCTTCCTCTTCCTTCTA 499
|||| |||||| ||||||| ||||| ||||| | ||||||| || || || || || |
Sbjct 768 GTCGCGATTCACGAACTTCGAAATCATCTCTCGTCTCCGATCTCCTCCCGCTCCCGTCGA 827
Query 500 CACCA-ATCTCTAAAATCATTCAA-CAGTTT-GAATCAAAAGGTTTCAATGTTCAAGAAA 556
| | || || || |||| | | || || | || | ||| ||| ||||||||||
Sbjct 828 TGC-AGATATCGAAGCTCAT-CGATCAATTCAGC-TCCAGAGGCTTCTCCGTTCAAGAAA 884
Query 557 TGGTTGCTCTT-AGTGGAGCACATTCTATAGGGTTTTCACATTGTAAAGAGTTTGTGGGT 615
|||||||| || ||||| || || | || || || |||||||| || ||||| |
Sbjct 885 TGGTTGCT-TTGAGTGGTGCTCACACCATCGGATTCTCACATTGCAAGGAGTTCACGAAC 943
Query 616 CAGGTGGGTCGGAATAATA---CCGGGTATAACCCGAGATTCGCGGTGGCTTTGAAGAAA 672
| ||| | |||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 944 CGGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTAGCTTTAAAGAAA 1003
Query 673 GCTTGTGCTAATTACCCTAAA-GATCCGACTATTTCTGTGTTTAATGATATTATGACTCC 731
|||||| | |||| || ||| || || || || ||||| || || || ||||||||||
Sbjct 1004 GCTTGTTCGAATT-CCAAAAATGACCCTACGATATCTGTCTTCAACGACGTTATGACTCC 1062
Query 732 TAATAAGTTTGATAATATGTATTATC-AGAATCTTAA-AAAGGGTCTTGGGTTACTTGAA 789
|| || || ||||||||||||| || ||||| || ||||| ||| ||||||||||||
Sbjct 1063 GAACAAATTCGATAATATGTATT-TCCAGAATATTCCGAAAGG-TCTCGGGTTACTTGAA 1120
Query 790 TCGGATCATGGGTTATATTCT--GACCCGAGAACCAGAACTTTTGTTGATCTT-TATGCT 846
|||||||| || || |||||| |||||||||||| | | || ||||| || || ||
Sbjct 1121 TCGGATCACGG-TT-TATTCTCCGACCCGAGAACCCGTCCGTTCGTTGAG-TTATACGCG 1177
Query 847 A-AGAATCAAGATCTGTT-TTTCAAAGATTTTGCTAGAGCTATGCAGAAGTTGAGTCTTT 904
| ||| ||| || ||| ||| || || ||||| |||||||||||||||||||||||
Sbjct 1178 AGAGAC-CAATCTCGGTTCTTT-AACGACTTTGCCGGAGCTATGCAGAAGTTGAGTCTTC 1235
Query 905 ATGGTATAAAGACTGGTA-GAAGAGGAGAGATCCGAAGAAGGTGTGATGC 953
| ||| | ||| || | | |||||||||||||| |||||||||||||
Sbjct 1236 ACGGTGTTTTGACCGG-ACGGCGAGGAGAGATCCGACGAAGGTGTGATGC 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5