BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484604
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28220.1 | Symbols: | TRAF-like family protein | chr3:10524... 1827 0.0
> AT3G28220.1 | Symbols: | TRAF-like family protein | chr3:10524404-10526728
FORWARD LENGTH=1360
Length=1360
Score = 1827 bits (989), Expect = 0.0
Identities = 1180/1269 (93%), Gaps = 25/1269 (2%)
Strand=Plus/Plus
Query 3 ACTTAACCAAACATGTTTGAAAAGGGGTTGATaaaaaaaGAAGAAAACAAGTTTCAAGAG 62
|||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 5 ACTTAACCAAACATGTCTGAAAAGGGGTTGATAAAAAAAGAAGACCACATGTTTCAAGAG 64
Query 63 GAGAAGAGAAAGACAAACTATGGAGCAATTTGCTTGGTTTGCTTCTTTTGTTTCTTT-TT 121
|||||||||||||||||||||||||||||| |||||| ||||||| ||| || ||| ||
Sbjct 65 GAGAAGAGAAAGACAAACTATGGAGCAATTGGCTTGGCTTGCTTCATTT-CTTGTTTCTT 123
Query 122 TGCATTCCAATTCATGAAACTTGTGACAACACAACCTT---TAACAACAACATCATCCAT 178
||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||
Sbjct 124 TGCATTCCAATTCATGAAAATCGTAACAACACAACCTTCAACAACAACAACATCATCCAT 183
Query 179 TTCCGTTATCGATAGCCCAATGTCCTCCCATAAACTCTCTGATAGGAGAGAATTATGGAG 238
| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 184 TGCCGTTATCGATAGCCCAATGTCCTCCCATAAGCTATCTGATAGGAGAGAAATATGGAG 243
Query 239 AGTTAGT-CCACCTTCTACCTATTGTCTCAAAATCGAATCTTTCAGAAAATTCGCCACTT 297
||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 244 AGTTA-TCCCACCATCTACCTATTGTCTCAAAATCGAATCTTTCATAAAATTCGCCACTT 302
Query 298 CTCCAAACGCCGAGAAGTACGAATCCCGTGCTTTTCAATCCGGTGGATACAACTGGACAC 357
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 303 CTCCAAACGCCGAGAAGTACGAATCCCGTCCTTTTGAATCCGGTGGATACAACTGGACAC 362
Query 358 TTATTGTCTATCCTAAAGGAAACATTAAGGAAGGAGCTCCAGGTGATTGGGTTTCAATGT 417
||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 363 TTATTGTCTATCCTAAAGGAAACATTAAGGAAGGAGCTCCACTTAATTACGTTTCAATGT 422
Query 418 ATGTCCAAATAGACAATTCAACACTCCTTAACTCTCCAAAAGAAGTTTACGCAGAAGTCA 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ACGTCCAAATAGACAATTCAACACTCCTTAACTCTCCAAAAGAAGTTTACGCAGAAGTCA 482
Query 478 AATTCTTCATTTATAACCGGAAAGAGGACAAGTACTTCACATATCAAGAGACGGATGCAA 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 483 AATTCTTCATTTATAACCGGAAAGAGGACAAGTACTTAACATATCAAGAGACGGATGCAA 542
Query 538 AGCGCTTTTTTCTGTTCAAACCATATTGGGGATATGGTAACGTTAGATCCTACGGCGACG 597
| |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 543 AACGCTTTTTTCTGTTCAAACCATATTGGGGATATGGTAATGTTAGACCCTACACCGACG 602
Query 598 TGGCGAATCCCGATGCTGGTTGGCTTTTCGACGGTGACAATGTTTTATTCGGTGTCGACG 657
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 603 TGGCTAATCCCAATGCTGGTTGGCTTTTCGACGGTGACAATGTTTTATTCGGTGTGGACG 662
Query 658 TTTTTGTCACTGAAGTTTTTAACAAATGGGAAGTATTCTCCTTCACTAAGAGTTTGCATA 717
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 663 TATTTGTCACTGAAGTTTTTAACAAATGGGAAGTGTTCTCATTCACTAAGAGTTTGCATG 722
Query 718 ACCGCCTTTACAAATGGACGTTAACCAATTTCTCGTCACTAGAGAAACAATACTATGTAT 777
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 723 ACCGCCTTTACAAATGGACGTTACCCAATTTCTCGTCACTAGAGAAACAGTACTATGTCT 782
Query 778 CTGACAAGTTCGTGATCGGTGGGAGAAGCTGGGCTTTGAAAGTGTATCCAAGTGGCGATG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CTGACAAGTTCGTGATCGGTGGGAGAAGCTGGGCTTTGAAAGTGTATCCAAGTGGCGATG 842
Query 838 GAGAAGGACAGGGTAACTCGCTGTCGCTATATGTTGTTGCGGTTGATGTTAAGCCGTACG 897
| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 843 GCGAAGGACAGGGTAACTCGTTGTCGTTATATGTTGTTGCGGTTGATGTTAAGCCGTATG 902
Query 898 ACAAGATTTACCTAAAAGCTAAGCTACGAATTATAAACCAGAGAGATTCTAAACATGTGG 957
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 903 ACAAGATTTACCTAAAAGCTAAGCTACGGATTATAAACCAGAGAGATTCTAAACACATGG 962
Query 958 AGAAGAAAGTCGAAAGCTGGTCGGATCAAGCAAACAGTTGGGGATTCCAGAAGTTTGTAC 1017
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAAGAAAGTTGAAAGCTGGTCGGATCAAGCAAACAGTTGGGGATTCCAGAAGTTTGTAC 1022
Query 1018 CATTTGCTGATCTTCAGGATACTTCTAAAGGTCTTCTTGTGAATGATACATTGAAGATAG 1077
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1023 CATTTGCTGATCTTAAGGATACTTCTAAAGGTCTTCTTGTGAATGATACATTGAAGATGG 1082
Query 1078 AGATTGAATTTGAAGATTTCTCTAACACAAAATACTTTCCAAGTTAAGTTTTGCATTATG 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 AGATTGAATTTGAAGATTTCTCTAACACAAAATACTTTCCAAGTTAAGTTTTGCAT-A-- 1139
Query 1138 ATTGCTCAACCA-A-AG-TCACA-CTCG-TTGCGTTTT-TCTTTTTAAGTGTTTTTGTGA 1191
|| || ||||| | || | | | | ||| ||| | | ||||||||||||||||||
Sbjct 1140 AT-GCAAAACCAGAGAGCTTGGAAC-CAATTGTGTTCTGT-TTTTTAAGTGTTTTTGTG- 1195
Query 1192 C-AATAATTGGAGGATTGGTCTTCCTAAGGTTTAGGAGCCTATATATCTCCCACTTTTCA 1250
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1196 CTAATAATTGGAGGATTGGTCTTCCTAAGGTTTAGGAGCCTAT----CTCCCACTTTTCC 1251
Query 1251 TTATTCCCT 1259
|||||||
Sbjct 1252 CAATTCCCT 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5