BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484606
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28230.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 691 0.0
AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Ut... 372 2e-102
> AT3G28230.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED
IN: 15 plant structures; EXPRESSED DURING: 6 growth stages;
CONTAINS InterPro DOMAIN/s: Something about silencing
protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis
thaliana protein match is: Sas10/U3 ribonucleoprotein
(Utp) family protein (TAIR:AT2G43650.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:10529215-10530199
FORWARD LENGTH=624
Length=624
Score = 691 bits (374), Expect = 0.0
Identities = 490/545 (90%), Gaps = 11/545 (2%)
Strand=Plus/Plus
Query 39 ATCGAGCTGATTTCCGATGACGATTGACAACGCGAGAGAAGAAAAGAAGATAAAAGGAGA 98
||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||| |
Sbjct 84 ATCGAGCTGATCAACGATGAAAATTGACAACGCTAGAGAAGAAAAGAAGAAAAAAGGACA 143
Query 99 GAAACGCAAGCA-C--CAGAATGATCAGGTTGATATGGAGATGTTAAAACTTCGAGAAGC 155
|||||||||||| | ||||||||||| | ||||||||| |||||||||||||||| ||
Sbjct 144 GAAACGCAAGCACCAGCAGAATGATCAAGCTGATATGGAAATGTTAAAACTTCGAGCTGC 203
Query 156 TCTAGAGGGAAAACTTAGAAGCAATGATTCTACTGTTCCAAAGTCTGATAAAGCTCAAAA 215
|||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 204 TCTAGAGGGAAAACATAGAAGCAATGGTTCTACTGTTTTAAAGTCTGCTAAAGCTCAAAA 263
Query 216 ACGTCAGAAATCAGAAGACTCAGAAGATGAATTTTACAAACAAGTGAAACAAAAACAAGA 275
||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 264 ACGCCAGAAATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGA 323
Query 276 AGCTAAAAGAGCTGCCAAAGCAGAGATCTATTCAAGGAAACCACATTTGATCCCGTCATC 335
|||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 324 AGCTAAAAAAGCTGCCAAAGCAGAAATCTATTCAAGGAAACCATATTTGATCCCGTCATC 383
Query 336 GCCAGAACGT-GTAGTTGGAAAACGTTTGATTTCAAATCAGATAGCTAGTAACAGAGGAT 394
|||||| | | || | ||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 384 GCCAGATC-TGGTGGATGGAAGACGATTGATTTCAAATCAGATGGCTAGTAACAGAGGAT 442
Query 395 TGACCCGTAAACGCAATAAGGACCATAAAAACCCGAGAAAGAACTATCGGGATAAGCACA 454
||||||| |||||||| |||||||||||||||||||||||||| || |||||| ||||||
Sbjct 443 TGACCCGGAAACGCAACAAGGACCATAAAAACCCGAGAAAGAAGTACCGGGATCAGCACA 502
Query 455 AGAAAAAAGTCATTAATCACAGAGGACAAGTCAGATTA-ATCAGGAAAC-CAA-TGGGTC 511
|||||| ||||||||| | || |||||| |||||| | |||||| || ||| ||||||
Sbjct 503 AGAAAATAGTCATTAACCGCAAAGGACAGGTCAGA-GATATCAGG--ACGCAAGTGGGTC 559
Query 512 CATATGCAGGAGAAACTCGCGGTATCAATCCCAACACAAGCCGGAGCATTCGAATCAAGA 571
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 560 CATATGCAGGAGAAACTCGCGGTATCAATCCCTACACAAGCCGCAGCATCCGAATCAAGA 619
Query 572 ACTAA 576
|||||
Sbjct 620 ACTAA 624
> AT2G43650.1 | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Utp)
family protein | chr2:18099238-18103345 FORWARD LENGTH=2355
Length=2355
Score = 372 bits (201), Expect = 2e-102
Identities = 299/346 (86%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 235 TCAGAAGATGAATTTTACAAACAAGTGAAACAAAAACAAGAAGCTAAAAGAGCTGCCAAA 294
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 1822 TCAGAAGATGAATTTTACAAACAAGTGAAACAGAAACAACAAGCTAAACGAGCTGCCAAA 1881
Query 295 GCAGAGATCTATTCAAGGAAACCACATTTGATCCCGTCATCGCCAGAACGTGTAGTTGGA 354
||||||||||||||||| ||||| |||||||| |||||||||||||||| || | ||||
Sbjct 1882 GCAGAGATCTATTCAAGAAAACCTCATTTGATGCCGTCATCGCCAGAACACGTGGATGGA 1941
Query 355 AAACGTTTGATTTCAAATCAGATAGCT-AGTAACAGAGGATTGACCCGTAAACGCAATAA 413
||||| |||||||||||||| | | |||||||||||||||||||| ||||||| |
Sbjct 1942 AAACGACACATTTCAAATCAGATGG-TGAGTAACAGAGGATTGACCCGGCAACGCAACAG 2000
Query 414 GGACCAT-AAAAACCCGAGAAAGAACTATCGGGATAAGCACAAGAAAAAAGTCATTA-AT 471
||||| | ||||||||||||||||| || ||| | || || |||||||||||| || |
Sbjct 2001 GGACC-TCAAAAACCCGAGAAAGAAGTACCGGAAAAATTACGAGAAAAAAGTCACTAGA- 2058
Query 472 CACAGAGGACAAGTCAGAT-TAATCAGGAAACCAATGGGTCCATATGCAGGAGAAACTCG 530
| || |||||| |||||| || ||||||||| || ||||||||||||||||||| | ||
Sbjct 2059 CGCAAAGGACAGGTCAGAGATA-TCAGGAAACAAACGGGTCCATATGCAGGAGAAGCCCG 2117
Query 531 CGGTATCAATCCCAACACAAGCCGGAGCATTCGAATCAAGAACTAA 576
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2118 AGGTATCAATCCCAACACAAGCCGGAGCATCCGAATGTAGAACTAA 2163
Score = 191 bits (103), Expect = 7e-48
Identities = 166/193 (86%), Gaps = 18/193 (9%)
Strand=Plus/Plus
Query 52 CCGATGACGATTGACAACGCGAGAGAAGAAAAGAAGATAAAAGGAGAGAAACGCAAGCAC 111
||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1315 CCGATGAAAATTGACAACGCAAGAGAAGAAAAGAAGAAAAAAGGAGAGAAACGCAAGCAC 1374
Query 112 CAGAATGATCAGGTTGAT----A---TG-G-AGATGTTAAAACTTCGAGAAGCTCTAGAG 162
|||||||||| ||||||| | || | |||||||||||||||||| ||||||||||
Sbjct 1375 CAGAATGATCTGGTTGATGTGCAAAGTGAGGAGATGTTAAAACTTCGAGCAGCTCTAGAG 1434
Query 163 GGAAAACTTAGAAGCAATG-A-T--T-----CTACTGTTCCAAAGTCTGATAAAGCTCAA 213
||||||||||||| ||||| | | | |||||||| ||||||||||||||||||||
Sbjct 1435 GGAAAACTTAGAACCAATGGAGTCCTTGGTTCTACTGTTTCAAAGTCTGATAAAGCTCAA 1494
Query 214 AAACGTCAGAAAT 226
||||| |||||||
Sbjct 1495 AAACGCCAGAAAT 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5