BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484611
Length=2008
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12420.1 | Symbols: | transposable element gene | chr2:5027... 1718 0.0
AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 1698 0.0
AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 1520 0.0
AT4G06627.1 | Symbols: | transposable element gene | chr4:3604... 1498 0.0
AT1G38140.1 | Symbols: | transposable element gene | chr1:1430... 455 8e-127
AT2G05647.1 | Symbols: | transposable element gene | chr2:2104... 296 5e-79
AT4G08598.1 | Symbols: | transposable element gene | chr4:5480... 132 2e-29
> AT2G12420.1 | Symbols: | transposable element gene | chr2:5027376-5029321
REVERSE LENGTH=1946
Length=1946
Score = 1718 bits (930), Expect = 0.0
Identities = 1282/1439 (89%), Gaps = 75/1439 (5%)
Strand=Plus/Plus
Query 619 TAT-TGGTAAGCTGAGTAGATTAGG-TTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT 676
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 459 TATATGGTAAGCTGAGTAGATTAGGTTTTAGGGTTAATATTGAGTAATGTGTGTGTATAT 518
Query 677 --CTGCTAAGTAGATTAGGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAAT 734
|||||||| |||| |||||||||||||||||||| ||| |||| |||||||| ||||
Sbjct 519 AGATGCTAAGTTGATTGGGTGTGTATATGGTAAGCTGTGTAGATTACGTTTAGGGGTAAT 578
Query 735 ATTGAGTAATATGTGTGTGTATGGTAAGCTGAGTAGATTTGTATAAAG-CTTGCTAATTG 793
|||||||||||||||| ||||| | || || || | ||| || | | ||| |||||||
Sbjct 579 ATTGAGTAATATGTGTATGTAT-AT-AGATG-CTA-AGTTG-ATTAGGTCTT-CTAATTG 632
Query 794 GTTTATGTAATTGTAGGTTTGGTCACGACAATGG----TAAGCTGA-CTCGGAAGATCAC 848
|||||||||||||||| ||||||||||||||||| |||| ||| || ||||||| |
Sbjct 633 GTTTATGTAATTGTAGATTTGGTCACGACAATGGTAATTAAGTTGACCT-GGAAGATTGC 691
Query 849 AAAGGTATTCACAAACAAGTTTAATGGGCCA-TATTACAATTGGAGCTGTGTACCTACTG 907
|||||||||||||||||||||| |||||||| | ||||| ||||||||||||| ||||||
Sbjct 692 AAAGGTATTCACAAACAAGTTTGATGGGCCATTTTTACAGTTGGAGCTGTGTATCTACTG 751
Query 908 AAAGAAGACACAAATACTTCCTCAAATTCGCGGT-AA-----A-------TTAA-C--TT 951
||| |||||| |||||||||||| ||||| | || || | |||| | ||
Sbjct 752 AAA-AAGACATAAATACTTCCTCGAATTCAC-GTAAACTTCTATCTCCTGTTAATCTTTT 809
Query 952 -CTATTGTCTGTATCCATTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCC 1010
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 810 ACTATTGTCTATATCCATTTGGTTTGGTTTCGTTGTTTGATCACTAACATCAAACTCTCC 869
Query 1011 TC-TTGTTTTGTAGAAAACACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA 1069
|| || |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct 870 TCTTTTTTTTGTAGAAAACACACACATGACATCCATCACTAACCGGTATAATTGAAGAGA 929
Query 1070 AATTCTACAAAATATGTCAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAAC 1129
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AATTCTACAAAATATGTTAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAAT 989
Query 1130 GAGCCACTGAG-AGACCGCCATGGATTG-AGAAGACATTGTGGAAGGAAATGTGTGAGTA 1187
|||||| | || | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 990 GAGCCAATTAGCA-ACCGCCATGGATTGAAG-AGACATTGTGGAAGGAAATGTGTGAGTA 1047
Query 1188 TTGGGACACAGAAGAAG-CACTTGCCAAGAGTT-CAACCACATCAGCAGCTCGAATGTCT 1245
||| ||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||
Sbjct 1048 TTGAGACACAGAAGAAGCCA-TTGCCAAGAGTTCCAATCACATCAGCAGCTCGAATGTCT 1106
Query 1246 GACCGTAATGGTCTTGGTCCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATC 1305
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 1107 GACCGTAATGGTCTTGGTTCTCACAAGCATGTATCAGGGCCAAAGTCTTTCTTATAAATC 1166
Query 1306 GAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGGTTTTCCTTA 1365
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1167 GAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGTTTTTTCTTA 1226
Query 1366 AGAATTTGAAtt-tt-ttt-GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCT 1422
|||| ||||||| || ||| |||||||||||||||||||||| |||| |||||||||||
Sbjct 1227 AGAAGTTGAATTGTTGTTTTGTGAACAACATTTCAGGAAATTTAGCTCAGAAGACCACCT 1286
Query 1423 ACTATTGGTGAGATATT-CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAG 1481
| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1287 AGTGTTGGTGAGATATTTC-TTAGGACTCATACCAAAAAAGATGGGACTTTTGTTGATAG 1345
Query 1482 GAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCT 1541
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1346 GAAGGCGTAGGTAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCGT 1405
Query 1542 TGTGAATGATGAAGGGTCTGATGGTACATCCCGTCGATCAGAACTATCTCAAGAGGAGGA 1601
|| |||||||||||||||||||||||| |||| | ||||| |||||||||||||| ||||
Sbjct 1406 TGAGAATGATGAAGGGTCTGATGGTACTTCCCATGGATCATAACTATCTCAAGAGAAGGA 1465
Query 1602 TGATGAGATCTTCCTTCTGGTAATGT-------C-tttttttATTA-T-T-ATCACTTAC 1650
||||||||||||||||| |||||||| | ||||||| || | | |||||||||
Sbjct 1466 TGATGAGATCTTCCTTCAGGTAATGTGGTTAATCCTTTTTTTCTTTGTATCATCACTTAC 1525
Query 1651 TTCATCTTTTAAGAACTAATCCTCTTATCtttttttGCAGTCAACTGTCACAAACGAGAG 1710
|||||||||||||||||||||||||| ||| || | || ||||||||||| |
Sbjct 1526 TTCATCTTTTAAGAACTAATCCTCTTGTCT-------CA---A-CTATCACAAACGAGTG 1574
Query 1711 AGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGTACCC 1770
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1575 AGGCGTATACTTCGGAATGGGAAGCTTAGGGAGGT-CATTAATGGGAAGCGGAAGTACCC 1633
Query 1771 AGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGAT 1830
| ||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1634 AAGAAGCAGTTATGCTTTCACTTCCTTGCAATCACATCTTGAGGAAGCCAATCGCAAGAT 1693
Query 1831 AGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATCGCGGGTGAAAGCTGA 1890
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1694 AGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGGCATTGCGGGTGAAAGCTGA 1753
Query 1891 GCAAGCAGAGATCAAGCGTGTTACTAATGAGCAACAAGCAA-AGATCAAACACTTGAGGA 1949
|||| || |||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 1754 GCAACCAAAGATCAAGCGTGTTGCTAATGAGCAACAAG-AAGAGATCAAACACTTGAGGA 1812
Query 1950 TGGTGAAGAAGTACTTGACCAAAACTGACCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2008
||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||
Sbjct 1813 TGGTGAAGAAGTACTTGACCAAAACTGACCCTAGGTTTCTCGTCTTCCTCGAGTCTGCT 1871
> AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991
FORWARD LENGTH=2284
Length=2284
Score = 1698 bits (919), Expect = 0.0
Identities = 1256/1410 (89%), Gaps = 57/1410 (4%)
Strand=Plus/Plus
Query 632 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT-CTGCTAAGTAGATT 690
||| |||||| | || |||||||||||||||||||||||||||| || | |||| ||||
Sbjct 818 AGTTGATTAGAATAAGAGTTAATATTGAGTAATGTGTGTGTGTATCCT-CAAAGTTGATT 876
Query 691 AGGTGTGT-ATAT-GGTAAGCTGAGTAT-ATTAGGTTTAGGGTTAATATTGAGTAATATG 747
|||||||| |||| ||| | ||| | |||||||| || |||||||||||||||| ||
Sbjct 877 AGGTGTGTAATATATTTAA--TAAGT-TGATTAGGTTAAGCGTTAATATTGAGTAATGTG 933
Query 748 TGTGTGTATGGTAAGCTGAGTAGATTTGTATAAAGCTTGCTAATTGGTTTATGTAATTGT 807
||| | |||| |||| ||| ||| ||||||| | ||||||||||||||||||||||
Sbjct 934 TGTATATATGCTAAGTTGATTAGGTTTGTAT--A---TGCTAATTGGTTTATGTAATTGA 988
Query 808 AGGTTTGGTCACGACAATGGTAAGCTGACTCGGAAGATCACAAAGGTATTCACAAACAAG 867
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 989 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTCTTCACAAACAAG 1048
Query 868 TTTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTC 927
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1049 TTTAATGGGCCATTTTACAGTTGGAGCTGTGTACCTACTGAAAGAAGACACATATACTTC 1108
Query 928 CTCAAATTCGCGGTAAATTAACTTCTATTGTC-T-GT-A--TC---CATTTGGTTTGGTT 979
||| ||||||| |||||||||||||| | || | | | || ||||||||||||||
Sbjct 1109 CTCGAATTCGCAATAAATTAACTTCTA-TCTCTTATTAATCTCTTACATTTGGTTTGGTT 1167
Query 980 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACACATGGC 1039
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1168 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTACACACACATGGC 1227
Query 1040 ATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAG-CTGCGTATG 1098
||||||||||||| |||||| ||||||| ||||||| ||||||||||| | |||||||
Sbjct 1228 ATCCATCACTGACTGGTGTAGTTGAAGAAAAATTCTTTAAAATATGTCAAAC-GCGTATG 1286
Query 1099 AAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATGGATTGAG 1158
|||||||||||||||||||||||| ||||||| || | |||| |||||||||||||||||
Sbjct 1287 AAGGACATGGTTTCTAAGGCTTGCGCAAAACGTGCAAATGAGCGACCGCCATGGATTGAG 1346
Query 1159 AAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAGC-ACTTGCCAAGAG 1217
||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||
Sbjct 1347 AAGACATTGTGGAAGGAAATGTGTGCGTATTGGGACACAAAAGAAGCCA-TTGCCAAGAG 1405
Query 1218 TTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATGT 1277
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1406 TTCAACCACATCAGCAGCTTGAATGTCTGACCGTAATGGTCCTGGTCCTCACAAACATGT 1465
Query 1278 ATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTC 1337
|||||||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 1466 ATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATAGTAAGTTACAT-------T- 1517
Query 1338 TTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACAACATTTCA 1397
| ||||||||| | |||| |||| |||||| | |||||| |||||||||||||||||||
Sbjct 1518 T-GTTTATTTATAGAATGATTTTTATTAAGAGTCTGAATTGTTTTGTGAACAACATTTCA 1576
Query 1398 GGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACTCATACCAA 1457
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1577 GGAAATTGAGTTGGGAAGACCACCTACTATTGGTGAGATATTCGTTAAGACTCATACCAA 1636
Query 1458 AAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAA 1517
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1637 AAAAGATGGGACTTTTGTTGATAGGAAGGCGCATGAAATTCATGAGGCATATTTGAGGAA 1696
Query 1518 CAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTACATCCCGTCG 1577
||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||
Sbjct 1697 CAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGATGGTACTTCCCGTCG 1756
Query 1578 ATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAATG-TCtt-tt--t 1633
||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||| || |
Sbjct 1757 ATCAGAACTATCTCAGGAGGAGGATGATGAGGTCTTCCTTCAGGTAATGGTCTTGTTCCT 1816
Query 1634 -ttAT-T-------AT-T-ATCACTTACTTCATCTTTTA-AGAACTAATCCTCTTATCtt 1681
|| | | || | ||||||| ||||||||||| | || |||||||||| ||||
Sbjct 1817 CTTGTCTTTTTTTTATATTATCACTTGCTTCATCTTTTCTACAA-TAATCCTCTTGTCTT 1875
Query 1682 tt-tttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGG 1740
|| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 1876 TTGTTTGCAGTCAACTGTCACAAACAAGAGATGGGTATACTTTGGAATGGGAAGCTTAGG 1935
Query 1741 GAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCA 1800
||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1936 GAGGTACATCAATGGAAAGCGGAAGTACCCAGGCTGCAGTTCTGCTTTCACTACCTTGCA 1995
Query 1801 GTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATCG 1860
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1996 GTCACAGCTTTAGGAAGCCAACTGCAAGATAGAAGAACAAGCGACTCTCCAGGCACATCG 2055
Query 1861 GGAGGCAGAGGCATCGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTACTAATGA 1920
||||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||
Sbjct 2056 TGAGGCAGAGGCATTGAGGGTGAAAGCTGAGCAAGCAGATATCAAGCGTGTTGCTAATGA 2115
Query 1921 GCAACAAGCAA-AGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCA-AAACTGAC 1978
|||||||| || |||||||||||||||||||||| |||||||||||||| | ||| |||
Sbjct 2116 GCAACAAG-AAGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGAC-AGAAAGAGAC 2173
Query 1979 CCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2008
|||||||||||||| || ||||||||||||
Sbjct 2174 CCCAAGTTTCTCGCATTCCTCGAGTCTGCT 2203
Score = 322 bits (174), Expect = 9e-87
Identities = 284/335 (85%), Gaps = 16/335 (5%)
Strand=Plus/Plus
Query 319 TCTCCAGCGCCGGTTCAACGGGAA-GCCTCTAATCAGTCTCCAGCACCGGTTCAACCG-G 376
||||||||| |||||| || ||| ||||| ||||||||| ||| | ||||||| || |
Sbjct 391 TCTCCAGCGGCGGTTC-ACAAGAATGCCTCCAATCAGTCTATAGCGCTGGTTCAA-CGAG 448
Query 377 AAGCCTCCAATCCTCCACCTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCAC 436
|||| |||||||||| || || ||| || |||||||||| ||||||||||| |||||| |
Sbjct 449 AAGCATCCAATCCTCTACTTCCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTC 508
Query 437 ATCACAGCTCTCAAGCTCAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG- 495
|||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct 509 ATCACAGCTCTCAAGCTCAAAACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGT 568
Query 496 --G---CTGAT-TATGAAAGGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCAT 549
| ||||| | |||||||||||||||||||||||||| || |||||| | ||| |||
Sbjct 569 TTGTGGCTGATCT-TGAAAGGGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACAT 627
Query 550 GAGTTGCTT-CTCCGGCCAGGACGTGAGAAGTATACAACGGTCATCTCTCCCACATTTGA 608
|| ||||| | || |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 628 GACATGCTTGC-CCAGCCAGGCCGTGAGAAGTATACAACGGTTATCTCTCCCACATTTGA 686
Query 609 GCCTGAAACC-TATTGGTAAGCTGAGTAGATTAGG 642
|||| |||| ||| ||||||||||| | ||||||
Sbjct 687 GCCTCTAACCGTAT-GGTAAGCTGAGAATATTAGG 720
Score = 211 bits (114), Expect = 2e-53
Identities = 194/232 (84%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 20 AGAGGAAGGGGATCGAAGATTCCCCCCAAAATCGACCCACTTCTTCCCAGCCTGTAGGAG 79
|||||||| | ||| || ||| ||| | |||||||||||||||||||||||| || |||
Sbjct 31 AGAGGAAGTGTATCAAACATT-CCCTC-AAATCGACCCACTTCTTCCCAGCCAGTTCGAG 88
Query 80 TTGAATCGAAGACT------TTGAATCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGT 133
||||| |||||||| | |||||||| || || |||| ||||||||| |||||||
Sbjct 89 TTGAACCGAAGACTAGGGCATCAAATCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGT 148
Query 134 TCACGCCGGCGAATCGTCAAGCCCCACTTCAAGATTCTGAACAAGAGCCGATTGCACAAC 193
|||||| || || ||||| |||||| |||||||||| |||||| | |||| |||||| |
Sbjct 149 TCACGCTGGTGATTCGTCCAGCCCCGCTTCAAGATTTTGAACATCATCCGACTGCACAGC 208
Query 194 CTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGCAACTTTTCCA 245
|| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 209 CTTCAACGGGTCCATCCGTCAGGGACTATCCTCCTCCGACGCAACTTTTCCA 260
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 246 ATCTGGAGGATCTGTTCATCGTCTAGCCTC 275
||||||||||||||||||||||||||||||
Sbjct 348 ATCTGGAGGATCTGTTCATCGTCTAGCCTC 377
> AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916
FORWARD LENGTH=2229
Length=2229
Score = 1520 bits (823), Expect = 0.0
Identities = 1228/1410 (87%), Gaps = 82/1410 (6%)
Strand=Plus/Plus
Query 632 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTATCTGCTAAGTAGATTA 691
||| |||||||| || ||||||||||||||| ||||||| |||||||| |||||
Sbjct 846 AGTTGATTAGGTGAAGCGTTAATATTGAGTAA------TGTGTATATGCTAAGTTGATTA 899
Query 692 GGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 751
||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 900 GGTTTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGT-A-A------ 951
Query 752 TGTATGGTAAGCTGAGTAGATTTGTATAAAGCTTGCTAATTGGTTTATGTAATTGTAGGT 811
||| || | | | || || ||| || |||||||||||||||||||||||||||
Sbjct 952 --TAT-GT--G-T--G-AG--TT-TAT--AG-ATGCTAATTGGTTTATGTAATTGTAGGT 996
Query 812 TTGGTCACGACAATGGTAAGCTGACTCGGAAGATCACAAAGGTATTCACAAACAAGTTTA 871
|||||||||| ||||||||| |||| | |||||||||||||||||| | ||||||||||
Sbjct 997 TTGGTCACGAAAATGGTAAGATGACCCAGAAGATCACAAAGGTATTTAAAAACAAGTTTG 1056
Query 872 ATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTCCTCA 931
||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 1057 ATGGGCCATATTACAGTTGGAGCTATGTACCTACAGAAA-AAGACACAAATACTTCCTCG 1115
Query 932 AATTCG-CG----GTAA-----A-----T--TAA---CTTCTATTGTCTGTATCCATTTG 971
|||||| || ||| | | ||| |||||||||| ||||||||||||
Sbjct 1116 AATTCGCCGTAAATTAACTTTTATCTCCTAGTAATCTCTTCTATTGTTTGTATCCATTTG 1175
Query 972 GTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACA 1031
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1176 GTTTGGTTTGGTTGTTTGATCACTAACATCAAATTCTCCTCTTGTTTTATAGAAAACACA 1235
Query 1032 CACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCT 1091
||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 1236 CACTTGGCATCCATCACTGACTGGTGTAATTGTAGAAAAATTCTACAAAATATGTCAGCT 1295
Query 1092 GCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATG 1151
||||||||||||||||||||||||||||||| |||||| | ||| |||| || |||||
Sbjct 1296 GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAAACAAACCAATGAGCTTCCACCATG 1355
Query 1152 GATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTG 1210
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1356 GATTGAGAAGACATTGTGGAAGGAAATGTGTGTGTATTGGGACACAGAAGAAGTCA-TTG 1414
Query 1211 CCAAGAGTTCAACCACATCAGC-AGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCAC 1269
||||||||| ||||||||| || || ||||||||||||||||||||||||||| |||||
Sbjct 1415 CCAAGAGTTAAACCACATCCGCAAG-TCGAATGTCTGACCGTAATGGTCTTGGCCCTCAA 1473
Query 1270 AAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATC 1329
|| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1474 AAACATGTATCGGGGACAAAGTCTTTCTTACAAATCGAGTAAGAGATTGTAAGTTACATC 1533
Query 1330 AAGCACTCTTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACA 1389
||||||||||||||| || | | |||||||| |||||| |||||||||||
Sbjct 1534 AAGCACTCTTGTTTA-TT---T-A---------TTAAGAATCTGAATTGTTTTGTGAACA 1579
Query 1390 ACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACT 1449
||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||
Sbjct 1580 ACATTTCAGGAAATTGAGCTGAGAAGACAACCTACTATTGTTGAGATATTCCTTAGGACT 1639
Query 1450 CATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATAT 1509
||||||||||||||||||| ||||||| | |||| ||| ||||||||||||||||||
Sbjct 1640 CATACCAAAAAAGATGGGA-CGTTGTTGACACGAAGATGCAAGAAATTCATGAGGCATAT 1698
Query 1510 TTG-AAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTAC 1568
||| | | |||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 1699 TTGTATG-ACAAGGAAGCTAAGTTGGTTCCCCTTGAGAATGATGAAGGGTCTGATGGTAC 1757
Query 1569 ATCCCGTCGATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAATGT- 1627
|||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1758 TTCCCGTCGATTAGAACTATCTCAAGAGGATGATGATGAGATTTTCCTTCAGGTAATGTG 1817
Query 1628 Ctt--t--ttttATTATT-A-TCACTTACTTCATCTTTTAAGAACTAATCCTCTTATCtt 1681
|| | |||| || || | |||||| ||||||||||||||||||||||||||| ||||
Sbjct 1818 GTTAATACTTTTTTTTTTAATTCACTTCCTTCATCTTTTAAGAACTAATCCTCTTGTCTT 1877
Query 1682 tt-tttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGG 1740
|| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1878 TTGTTTGCATTCAACTGTCACAAACGAGAGAGAGGTATACTTCGGAATGGGAAGCTTAGG 1937
Query 1741 GAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTT-GC 1799
|||||||||||||| |||||||||||||||| ||| || || ||||||||||||||| ||
Sbjct 1938 GAGGTACATCAATGAGAAGCGGAAGTACCCATGAAACACTTATGCTTTCACTTCCTTTGC 1997
Query 1800 AGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATC 1859
| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1998 AATCACAGTTTGAGGAAGTCAACCGCAAGATAGAAGAACAAGCGACTCTCCAATTACATC 2057
Query 1860 GGGAGGCAGAGGCATCGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTACTAATG 1919
| ||||||||| || |||||| |||| |||||||||||| |||||||||||| |||||
Sbjct 2058 GTAAGGCAGAGGAATTGCGGGTAAAAGTTGAGCAAGCAGATATCAAGCGTGTTGCTAATA 2117
Query 1920 AGCAACAAGCAAAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCA-AAACTGAC 1978
|||||||| || ||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 2118 AGCAACAAACAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGAC-AGAAACTAAC 2176
Query 1979 CCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2008
|||| |||||||| || ||||||||||||
Sbjct 2177 CCCATGTTTCTCGAATTCCTCGAGTCTGCT 2206
Score = 337 bits (182), Expect = 3e-91
Identities = 286/334 (86%), Gaps = 15/334 (4%)
Strand=Plus/Plus
Query 319 TCTCCAGCGCCGGTTCAACGGGAAGCCTCTAATCAGTCTCCAGCACCGGTTCAACCG-GA 377
||||||| | | ||||||| |||||||| |||||||||||||| |||||||| || ||
Sbjct 420 TCTCCAGAGGCAGTTCAACCTGAAGCCTCCAATCAGTCTCCAGCGGCGGTTCAA-CGAGA 478
Query 378 AGCCTCCAATCCTCCAC-CTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCAC 436
||| |||||||||| || | || | |||||||||||||||||||||| || ||||||||
Sbjct 479 AGCATCCAATCCTCTACTTTAGG-AAGCGTCAAATCCTCCACCTCGAGTCTTTGTATCAC 537
Query 437 ATCACAGCTCTCAAGCTCAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG- 495
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 538 ATCACAGCTCTCAAGCTCAAAACTCACACGCGGAGGAAGATGAAGATGAGGAAGCTGAGT 597
Query 496 --G---CTGATTATGAAAGGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATG 550
| |||||| |||||||||||||||| |||||||||||| |||||| ||||| |||
Sbjct 598 TTGAGGCTGATTTTGAAAGGGAATCAACTATCCCTGAAGATTTGCTTGCAACTCTATATG 657
Query 551 AGTTGCTT-CTCCGGCCAGGACGTGAGAAGTATACAACGGTCATCTCTCCCACATTTGAG 609
|||||||| | || |||| | | |||||| |||||||||||||||||||| | ||| |||
Sbjct 658 AGTTGCTTGC-CCAGCCAAGCCATGAGAAATATACAACGGTCATCTCTCCTAAATT-GAG 715
Query 610 CCTGAAAC-CTATTGGTAAGCTGAGTAGATTAGG 642
||| |||| |||| ||| ||||||||| ||||||
Sbjct 716 CCTCAAACTCTAT-GGTTAGCTGAGTATATTAGG 748
Score = 200 bits (108), Expect = 4e-50
Identities = 193/232 (83%), Gaps = 14/232 (6%)
Strand=Plus/Plus
Query 22 AGGAAGGGGATCGAAGATTCCCCCCAAAATCGACCCACTTCTTCCCAGCCTGTA-GGAGT 80
|||||||| || ||||||| ||||| |||| |||||||||||||||| || | ||||
Sbjct 46 AGGAAGGGTATAGAAGATT-CCCCC-AAATAGACCCACTTCTTCCCA-CC-AAATCGAGT 101
Query 81 TG-AATCGAAGA-C-----TTTGAATCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGT 133
|| ||| ||||| | ||||||||| | || ||||| ||||||||||| |||||||
Sbjct 102 TGAAAT-GAAGACCAAGGAGTTGAATCGACGGCCCAGGGGGCTTCCCAGCCAATACGAGT 160
Query 134 TCACGCCGGCGAATCGTCAAGCCCCACTTCAAGATTCTGAACAAGAGCCGATTGCACAAC 193
||||||||||||||||||||| || |||||||||||||||| ||| | ||||||||| |
Sbjct 161 TCACGCCGGCGAATCGTCAAGTCCTGCTTCAAGATTCTGAACGAGATCTGATTGCACATC 220
Query 194 CTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGCAACTTTTCCA 245
||||||| ||| |||| | |||||||||||||||| ||||||||||| |||
Sbjct 221 CTCCAACAAGTCAAACCGTGAGGGACTATCCTCCTCTGACGCAACTTT-CCA 271
Score = 87.9 bits (47), Expect = 3e-16
Identities = 52/54 (96%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 619 TAT-TGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTG 671
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 906 TATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 959
> AT4G06627.1 | Symbols: | transposable element gene | chr4:3604916-3606209
FORWARD LENGTH=1294
Length=1294
Score = 1498 bits (811), Expect = 0.0
Identities = 1109/1245 (89%), Gaps = 52/1245 (4%)
Strand=Plus/Plus
Query 796 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACTCGGAAGATCACAAAGGTA 855
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCAGAAGATCACAAAGGTA 60
Query 856 TTCACAAACAAGTTTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGA 915
|||| |||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 61 TTCATAAACAAGTTTGATGGGCCATTTTACAGTTGGAGATGTGTACCTACTGAAAGAAGA 120
Query 916 CACAAATACTTCCTCAAATTCGCGGTAAATTAA---C--T-TC-TATT-GTCTGTATCCA 967
|||| |||||||||| |||||| |||||| ||| | | || |||| ||| | | ||
Sbjct 121 CACATATACTTCCTCGAATTCGAGGTAAAGTAAGTTCTATCTCTTATTAATCTCT-TACA 179
Query 968 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTA 239
Query 1028 CACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAAA-TTCTACAAAATATGT 1086
|||||||||||||||||||| ||||||||||| ||||| | | | |||| |||||||||
Sbjct 240 CACACACATGGCATCCATCAGTGACCGGTGTAGTTGAATA-ATAGTTCTTTAAAATATGT 298
Query 1087 CAG-CTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACC 1145
|| | ||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||
Sbjct 299 CAAAC-GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAGACGTGCCAATGAGCGACC 357
Query 1146 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAGC 1205
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 358 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGCGTATTGAGACACAGAAGAAGC 417
Query 1206 -ACTTGCCAAGA-GTTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGT 1263
| || ||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CA-TTACCA-GAAGTTCAACCACATCAGTAGCTCGAATGTCTGACCGTAATGGTCTTGGT 475
Query 1264 CCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGT 1323
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 476 CCTCACAAACATGTATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATGGTAAGT 535
Query 1324 TACATCAAGCACTCTTGTTTATTTACAT-AATGGTTTTCCTTAAGAATTTGAAttttttt 1382
||||| | | ||||||||| || |||| |||| |||||| | |||||| ||||
Sbjct 536 TACAT-------T-T-GTTTATTTA-ATGAATGATTTTTATTAAGAGTCTGAATTGTTTT 585
Query 1383 GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCAT 1442
|||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 586 GTGAACAACATTTCAGAAAATTGAGCTAGGAAGACCACCTACTATTGGTGAGGTATTCGT 645
Query 1443 TAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGA 1502
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 646 TAAGACTCATACCAAAAAAGATGGGACTTTTGTTGATAAGAAGGCGCAGGAAATTCATGA 705
Query 1503 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGA 1562
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 706 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGA 765
Query 1563 TGGTACATCCCGTCGATCAGAACTATCTC-AAGAGGAGGATGATGAGATCTTCCTTCTGG 1621
||||| |||||||||||||||||||||| || ||||||| |||||| ||||||||| ||
Sbjct 766 CGGTACTTCCCGTCGATCAGAACTATCTCTAA-AGGAGGAGGATGAGGTCTTCCTTCAGG 824
Query 1622 TAATG-TCtt--t-tt-tt--ATT--------ATTATCACTTACTTCATCTTTTAAG-AA 1665
| ||| |||| | || || ||| |||||||||| ||||||||||| | ||
Sbjct 825 TCATGGTCTTGGTCTTCTTTTATTTCTTCTCTATTATCACTTGCTTCATCTTTTCTGCAA 884
Query 1666 CTAATCCTCTTATCtttt-tttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCG 1724
|||| ||| | ||||| ||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 885 -TAATTCTCGT--CTTTTGTTTGCAGTCAACTATCACAAACGAGAGAGGGATATACTTTG 941
Query 1725 GAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTG 1784
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||
Sbjct 942 GAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCAGAAGTACCCAGGCAGCAATTTTG 1001
Query 1785 CTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGA 1844
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1002 CTTTCACTACCTTGCAATCACAACTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGA 1061
Query 1845 CTCTCCAAGCACATCGGGAGGCAGAGGCATCGCGGGTGAAAGCTGAGCAAGCAGAGATCA 1904
|||||||||||||||| |||| |||||||| ||| |||||||||||||||||||| ||||
Sbjct 1062 CTCTCCAAGCACATCGTGAGGTAGAGGCATTGCGCGTGAAAGCTGAGCAAGCAGATATCA 1121
Query 1905 AGCGTGTTACTAATGAGCAACAAGCAAAGATCAAACACTTGAGGATGGTGAAGAAGTACT 1964
|||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1122 AGCGTGTTGCTATTGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTTAAGAAGTACT 1181
Query 1965 TGACCA-AAACTGACCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2008
|||| | |||||||||||||||||||||| || |||||| |||||
Sbjct 1182 TGAC-AGAAACTGACCCCAAGTTTCTCGCATTCCTCGAGACTGCT 1225
> AT1G38140.1 | Symbols: | transposable element gene | chr1:14300842-14302929
FORWARD LENGTH=2088
Length=2088
Score = 455 bits (246), Expect = 8e-127
Identities = 621/790 (79%), Gaps = 73/790 (9%)
Strand=Plus/Plus
Query 809 GGTTTGGTCACGACAATGGTAAGCTGACTCGGAAGATCACAAAGGTATTCACAAACAAGT 868
|||||||| | ||||| ||| | | ||| || |||||||||| || || ||||||||||
Sbjct 878 GGTTTGGTAAGGACAAGGGT-ATTTTACTAGGTAGATCACAAAAGTTTTTACAAACAAGT 936
Query 869 TTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAA-ATACTTC 927
|| ||| ||||||||||| |||||| ||||| ||||||| ||||||| | || |||||||
Sbjct 937 TTGATGAGCCATATTACAGTTGGAGATGTGTGCCTACTGCAAGAAGAGA-AAGATACTTC 995
Query 928 CTCAAATTCGCGGTAAATTAACTTCTATTGTCTGTATCCA--TT-T-GGTTTGGTTTGGT 983
|| |||||| ||| | |||||||| | || | || | || | |||| ||||||
Sbjct 996 TTCGAATTCG-GGT-GA--AACTTCTA-TCTC-CTCTCAATTTTCTACTTTTGTTTTGGT 1049
Query 984 TGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACAC-A-TGGCAT 1041
| ||| |||||||||||||||||||| |||||||||| | |||||||| || | ||| ||
Sbjct 1050 TATTTCATCACTAACATCAAACTCTCTTCTTGTTTTGCAAAAAACACATACAATTGGGAT 1109
Query 1042 CCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCTGCGTATGAAG 1101
|| ||||| || |||| ||||||| |||| ||| || || ||||| |||||||||||
Sbjct 1110 CCCTCACTTACTAGTGTGATTGAAGCCAAATACTATAAGATTTGTCAACTGCGTATGAAA 1169
Query 1102 GACATGGTTTCTAAGGCTTGCTCAAAACGA-GCCACTGAGAG--ACCGCCATGGATTGAG 1158
|||||||||| ||| | || | || | || ||||| ||| | |||||||||
Sbjct 1170 GACATGGTTTGTAA-G--TG-----AGGGAGGTTAC-GAGAGCAACCTCTTTGGATTGAG 1220
Query 1159 AAGACATTGT-GGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAGA 1216
|| ||||||| |||| ||||||||| | ||||||||||||||||||| || || ||||
Sbjct 1221 AACACATTGTGGGAA-GAAATGTGTAACTATTGGGACACAGAAGAAGCCA-AAGCAAAGA 1278
Query 1217 GTTCAACCACATCAGC-AGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCAT 1275
|| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TTTTAACTACATCATCTA-CTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCAT 1337
Query 1276 GTATCGGGGCCA--AAGTCT-TTCTTACAAATCGAGCAAGAGATGGTAAGTT-A--CA-T 1328
|||||||| | | |||| | |||||||||||| | |||||| ||||||||| | || |
Sbjct 1338 GTATCGGG-C-ATGAAGT-TGTTCTTACAAATCAAACAAGAGGTGGTAAGTTCAAACACT 1394
Query 1329 C--AAGCACTCTTGTTTA-TTTACATA-ATGGTTT---TCCTTAAGAATTTGAAttt-tt 1380
|| || | |||||| ||||| || || | | |||| ||||| |||| ||| ||
Sbjct 1395 GTGAA-CA-T-TTGTTTTGTTTACTTATATAATATCCATCCT-AAGAAGTTGA-TTTGTT 1449
Query 1381 ttGTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGA-GATATT 1439
|||| ||||||||||||||| |||| | | |||||||||||| | | ||
Sbjct 1450 TTGTTTACAACATTTCAGGAAGTTGA-C--------C----TACTATTGGTGAAGTT-TT 1495
Query 1440 CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCA 1499
| |||| |||||||||||||||||||||| |||||| |||||||||| | ||||| ||||
Sbjct 1496 CCTTAGAACTCATACCAAAAAAGATGGGACTTTTGTCGATAGGAAGGTGGAGGAAGTTCA 1555
Query 1500 TGAGGCATATTTGAAGAACAAGG-AAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGT 1558
|||| |||| ||||||||||| || ||||||||| |||||||| |||||||||||||
Sbjct 1556 TGAGTCATAAAAGAAGAACAAGGCAA-CTAAGTTGGTTGCCCTTGAAAATGATGAAGGGT 1614
Query 1559 CTGATGGTAC 1568
||| |||||
Sbjct 1615 ATGAAGGTAC 1624
> AT2G05647.1 | Symbols: | transposable element gene | chr2:2104362-2104646
REVERSE LENGTH=285
Length=285
Score = 296 bits (160), Expect = 5e-79
Identities = 213/239 (89%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 1762 GAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAA 1821
||||||||||| |||||||||| ||||||| ||||||| | ||||||||||||||||||
Sbjct 3 GAAGTACCCAGTAAGCAGTTCTTCTTTCACAACCTTGCAATTACAGCTTGAGGAAGCCAA 62
Query 1822 CCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATCGCGGG- 1880
|| ||||||||| |||||||| ||||| ||||||||||| ||||||||||| | |||||
Sbjct 63 CCTCAAGATAGATGAACAAGCTACTCTACAAGCACATCGTGAGGCAGAGGCTTTGCGGGT 122
Query 1881 TGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTACTAATGAGCAACAAGCAAAGATCAAAC 1940
|| |||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| |
Sbjct 123 TG-CAGCTGAGCAAGCAGAGATCAAGCGGGTTGCAAATGAGCAACAAGCAGAGATCAAGC 181
Query 1941 ACTTGAGGATGGTGAAGAAGTACTTGACCAAAACTGACCCCAAGTTTCTCGCCTTTCTC 1999
|||||||||||||||||||||||||||||| ||| ||||| || ||||||||||| |||
Sbjct 182 ACTTGAGGATGGTGAAGAAGTACTTGACCACAACAGACCCAAATTTTCTCGCCTTCCTC 240
> AT4G08598.1 | Symbols: | transposable element gene | chr4:5480552-5482514
REVERSE LENGTH=1963
Length=1963
Score = 132 bits (71), Expect = 2e-29
Identities = 113/133 (85%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 118 CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC 175
||||||||||| || ||||||||| || |||||||| || ||||||||||| |||| |
Sbjct 1 CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG 59
Query 176 AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC 235
|| | ||||||||||| |||| |||||| | || |||| |||||||||||||||||||
Sbjct 60 AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC 118
Query 236 AACTTTTCCAATC 248
|||||||||||||
Sbjct 119 AACTTTTCCAATC 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99497480190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5