BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484614
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1219 0.0
AT3G28350.1 | Symbols: | Pseudogene of AT3G28350; unknown prot... 544 7e-154
AT1G51430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 248 6e-65
> AT3G28370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G51430.1);
Has 6174 Blast hits to 4953 proteins in 685 species: Archae
- 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants
- 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI
BLink). | chr3:10620627-10623259 FORWARD LENGTH=879
Length=879
Score = 1219 bits (660), Expect = 0.0
Identities = 760/809 (94%), Gaps = 4/809 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGGAATCGATACACAGAAGCAGCTTCTCTCTCTAATCCGCGATTTCACCTCTGAA 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGGAATCGATACGCAGAAGCAGCTTCTCTCTCTGATCCGCGATTTCACCTCTGAA 60
Query 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGGATCGAGATTTTGCAATCG 120
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGAATAGAGATTTTACAATCG 120
Query 121 GAAATCGAAGCAGCGAATTCAGAAGTTGA-AAATGCGAAGCGTATCAAAGAAGTGGCGGA 179
||| | ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 121 GAAGTTGAAGCAGCGAATTCAGAAGTTGAGAAA-GCGAAGCGTATCAAAGAAGTAGCGGA 179
Query 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATGCTACGATTCAATCTCT 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAATGATGCTACGATTCAATCTCT 239
Query 240 GGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGC 299
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 240 CGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTACTACTATTGGCAGTGAAGTTGATGC 299
Query 300 TCTTAAGAACAAGGAAGGATTTTTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTAAGAACAAGGAAGGATTACTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359
Query 360 CAAGGAGATAAGGGAGTTCCAGAGAACAGTAGATTTGACTTTTG-GCAATGATGATAGTA 418
||||||||||||||||||||||| ||||||||||| || ||| | ||| ||||||| |||
Sbjct 360 CAAGGAGATAAGGGAGTTCCAGAAAACAGTAGATTCGAGTTT-GAGCAGTGATGATGGTA 418
Query 419 CTGGCATAACACCAAATGTCAAAGCTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTA 478
|||||| ||| ||||||||||||||| ||| || |||||||||||||||| ||||||||
Sbjct 419 TTGGCATTACAGCAAATGTCAAAGCTTCTGAAGACGGTTCTGGAGCTGATTTAGAAGCTA 478
Query 479 TCAAGGGAATGCTATCTGATTTAAGTTCTCAATTAGAAAAAGAGGAAGAAGGATACCTGG 538
| ||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||
Sbjct 479 TAAAGGGAATGCTATCTGAAGTAAATTCTCAATTGGCAAAAGAGGAAGAAGGATACCTGG 538
Query 539 CTGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTCGATGACTATGAGAAGAAAATGT 598
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 539 CAGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTTGACGACTATGAGAAGAAAATGT 598
Query 599 CACTCATGGAGGCCATAACAGACAAAACGAATTCAGTGCAAGTTCTCGCTAGATATCCTT 658
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 CACTCATGGAGGCCATTACAGACAAAACGAATTCAGTGCAAGTTCTCACTAGATATCCTT 658
Query 659 TAATCCCATTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAAGAGATGCCGATGC 718
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TAATTCTGTTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAGGAGATGCCGATGC 718
Query 719 CAACATTGCCAGGCAGAAAATTTGGAAGTCTTGAGCTTACTTCTTCAGGGAGATCAAGAT 778
||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 CAACATTGCGAGGCGGAAAATTTGGAAGTCCTGAGCTTACTTCTTCAGGGAGATCAAGAT 778
Query 779 ATGGAGGTGTCTTAGTTAAAAGCCAATCT 807
|||||||||||||||||||||||| ||||
Sbjct 779 ATGGAGGTGTCTTAGTTAAAAGCCGATCT 807
> AT3G28350.1 | Symbols: | Pseudogene of AT3G28350; unknown protein
| chr3:10608359-10610924 FORWARD LENGTH=1015
Length=1015
Score = 544 bits (294), Expect = 7e-154
Identities = 348/373 (93%), Gaps = 7/373 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGGAATCGATACACAGAAGCAGCTTCTCTCTCTAATCCGCGATTTCACCTCTGAA 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGGAATCGATACGCAGAAGCAGCTTCTCTCTCTGATCCGCGATTTCACCTCTGAA 60
Query 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGA-GGATCGAGATTTTGCAATC 119
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAA-ACGGATCGAGATTTTACAATC 119
Query 120 GGAAATCGAAGCAGCGAATTCAGAAGTTGAAAATGCGAAGCGTATCAAAGAAGTGGCGGA 179
|||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 120 GGAAGTTGAAGCAGCGAATTCAGAAGTTGAGCATGCGAAGCGTATCAAAGAAGTAGCGGA 179
Query 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATGCTACGATTCAATCTCT 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATTCTACGATTCAATCTCT 239
Query 240 GGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGC 299
|||| | | |||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 240 CGAGG-A----TCAGTCTTCTTCAGGATGAAGTAACTACTATTGGCAATGAAGTTGATGC 294
Query 300 TCTTAAGAACAAGGAAGGATTTTTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTTAAGAACAAGGAAGGGTTACTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 354
Query 360 CAAGGAGATAAGG 372
|||||||||||||
Sbjct 355 CAAGGAGATAAGG 367
Score = 429 bits (232), Expect = 2e-119
Identities = 380/446 (85%), Gaps = 31/446 (7%)
Strand=Plus/Plus
Query 369 AAGGGAGTTCCAGAGAACAGTAGATTTGACTTTTGG-CAATGATGATAGTACTGGCATAA 427
|||||||||||||| ||||||||||| || ||||| | |||| ||||||||||||||||
Sbjct 435 AAGGGAGTTCCAGAAAACAGTAGATTCGA-GTTTGGCCGATGAGGATAGTACTGGCATAA 493
Query 428 CAC-CAAATGTCAAAGCTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTATCAAGGGA 486
| | ||||| ||||||||||||||||| | ||||||| ||||| ||||||||| || ||
Sbjct 494 C-CGCAAATATCAAAGCTTTTGAGGATTGCTCTGGAGATGATTTAGAAGCTATTAA--GA 550
Query 487 A--TGCTATCTGATTTA-AGTTCTCAATTAGAAAAAGAGGAAGAAGGATACCTGGCTGAG 543
| ||||||||||| || | ||||||||| | |||||||||||||||||||||||||||
Sbjct 551 ATTTGCTATCTGATGTACA-TTCTCAATTGGCGAAAGAGGAAGAAGGATACCTGGCTGAG 609
Query 544 CAGAAGATACAAGAACAGCTGCAGAAGGAGCTCGATGACTATGAGAAGAAAATGTCACTC 603
|||||||| ||||||||||||||||||||| | ||||| |||||||| ||||||||||||
Sbjct 610 CAGAAGATGCAAGAACAGCTGCAGAAGGAGTTTGATGAGTATGAGAAAAAAATGTCACTC 669
Query 604 ATGGAGGCCATAACAGACAAAACGAATTCAGTGCAA--GTTCTCGCTAGATATCCTTTAA 661
|| |||||||||||||| ||||| |||||||| ||| || | || || | | ||
Sbjct 670 ATTGAGGCCATAACAGAGAAAACAAATTCAGTTCAAACGT-C-CG--AG-T-TGG---AA 720
Query 662 TCCCATTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAAGAGATGCCGATGCCAA 721
| | | | | ||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 721 -C--AG-A--T-A--TTGGCTTCACTCGGGGAGGAGCTGCAAAAGAAATGCCGATGTCAA 771
Query 722 CATTGCCAGGCAGAAAATTTGGAAGTCTTGAGCTTACTTCTTCAGGGAGATCAAGATATG 781
|| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 772 CAATGCCAAGCAGAGAATTTGGAAGTTTTGAGCTTACTTCTTCAGGGAGATCAAGATAAG 831
Query 782 GAGGTGTCTTAGTTAAAAGCCAATCT 807
||||||||||||||||| ||||||||
Sbjct 832 GAGGTGTCTTAGTTAAA-GCCAATCT 856
> AT1G51430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G28370.1);
Has 13 Blast hits to 13 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19068241-19069776
FORWARD LENGTH=893
Length=893
Score = 248 bits (134), Expect = 6e-65
Identities = 247/297 (83%), Gaps = 26/297 (9%)
Strand=Plus/Plus
Query 204 TGAATTGTCTTTGAACGATGCTACGATTCAATCTCTGGAGGCAAGGATTAGTCTTCTTCA 263
||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 174 TGAGTTGTCTTTGAACGATTTTACTATTCAATCTCTGGAGGCAAGGATTAGTCTTCTTCA 233
Query 264 GGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGCTCTTAAGAACAAGGAAGGATTTTT 323
|||||||||||||||| ||||| ||||| |||||||||| |
Sbjct 234 GGATGAAGTTTCTACTAATGGCATTGAAGATGATGCTCTT--------------A----- 274
Query 324 CAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAACAAGGAGATAAGGGAGTTCCAGAG 383
|||||||||||||||||| ||||||||||| ||| |||||||| || ||||||| |
Sbjct 275 -AGAGATCAGTTTATAAGCTAAATGGAAGAATTGATCAAGGAGA-AA---AGTTCCATAA 329
Query 384 AAC-AGTAGATTTGACTTTTGGCAATGATGATAGTACTGGCATAACACCAAATGTCAAAG 442
||| | ||||||||| | | |||| |||||| | |||||||||||| ||||| |||||
Sbjct 330 AACTA-TAGATTTGAGTGTGGGCAGTGATGAGACTACTGGCATAACTGCAAATAACAAAG 388
Query 443 CTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTATCAAGGGAATGCTATCTGATT 499
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CTTTTGTGGATGGTTCTGGAGCTGATTCAGAAGCTATCAAGGGAATGCTATCTGATT 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5