BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484614 Length=807 Score E Sequences producing significant alignments: (Bits) Value AT3G28370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1219 0.0 AT3G28350.1 | Symbols: | Pseudogene of AT3G28350; unknown prot... 544 7e-154 AT1G51430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 248 6e-65 > AT3G28370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). | chr3:10620627-10623259 FORWARD LENGTH=879 Length=879 Score = 1219 bits (660), Expect = 0.0 Identities = 760/809 (94%), Gaps = 4/809 (0%) Strand=Plus/Plus Query 1 ATGGCGGGAATCGATACACAGAAGCAGCTTCTCTCTCTAATCCGCGATTTCACCTCTGAA 60 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGCGGGAATCGATACGCAGAAGCAGCTTCTCTCTCTGATCCGCGATTTCACCTCTGAA 60 Query 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGGATCGAGATTTTGCAATCG 120 ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| Sbjct 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGAATAGAGATTTTACAATCG 120 Query 121 GAAATCGAAGCAGCGAATTCAGAAGTTGA-AAATGCGAAGCGTATCAAAGAAGTGGCGGA 179 ||| | ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| Sbjct 121 GAAGTTGAAGCAGCGAATTCAGAAGTTGAGAAA-GCGAAGCGTATCAAAGAAGTAGCGGA 179 Query 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATGCTACGATTCAATCTCT 239 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAATGATGCTACGATTCAATCTCT 239 Query 240 GGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGC 299 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 240 CGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTACTACTATTGGCAGTGAAGTTGATGC 299 Query 300 TCTTAAGAACAAGGAAGGATTTTTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTTAAGAACAAGGAAGGATTACTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359 Query 360 CAAGGAGATAAGGGAGTTCCAGAGAACAGTAGATTTGACTTTTG-GCAATGATGATAGTA 418 ||||||||||||||||||||||| ||||||||||| || ||| | ||| ||||||| ||| Sbjct 360 CAAGGAGATAAGGGAGTTCCAGAAAACAGTAGATTCGAGTTT-GAGCAGTGATGATGGTA 418 Query 419 CTGGCATAACACCAAATGTCAAAGCTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTA 478 |||||| ||| ||||||||||||||| ||| || |||||||||||||||| |||||||| Sbjct 419 TTGGCATTACAGCAAATGTCAAAGCTTCTGAAGACGGTTCTGGAGCTGATTTAGAAGCTA 478 Query 479 TCAAGGGAATGCTATCTGATTTAAGTTCTCAATTAGAAAAAGAGGAAGAAGGATACCTGG 538 | ||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||| Sbjct 479 TAAAGGGAATGCTATCTGAAGTAAATTCTCAATTGGCAAAAGAGGAAGAAGGATACCTGG 538 Query 539 CTGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTCGATGACTATGAGAAGAAAATGT 598 | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 539 CAGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTTGACGACTATGAGAAGAAAATGT 598 Query 599 CACTCATGGAGGCCATAACAGACAAAACGAATTCAGTGCAAGTTCTCGCTAGATATCCTT 658 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 599 CACTCATGGAGGCCATTACAGACAAAACGAATTCAGTGCAAGTTCTCACTAGATATCCTT 658 Query 659 TAATCCCATTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAAGAGATGCCGATGC 718 |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 659 TAATTCTGTTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAGGAGATGCCGATGC 718 Query 719 CAACATTGCCAGGCAGAAAATTTGGAAGTCTTGAGCTTACTTCTTCAGGGAGATCAAGAT 778 ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 719 CAACATTGCGAGGCGGAAAATTTGGAAGTCCTGAGCTTACTTCTTCAGGGAGATCAAGAT 778 Query 779 ATGGAGGTGTCTTAGTTAAAAGCCAATCT 807 |||||||||||||||||||||||| |||| Sbjct 779 ATGGAGGTGTCTTAGTTAAAAGCCGATCT 807 > AT3G28350.1 | Symbols: | Pseudogene of AT3G28350; unknown protein | chr3:10608359-10610924 FORWARD LENGTH=1015 Length=1015 Score = 544 bits (294), Expect = 7e-154 Identities = 348/373 (93%), Gaps = 7/373 (2%) Strand=Plus/Plus Query 1 ATGGCGGGAATCGATACACAGAAGCAGCTTCTCTCTCTAATCCGCGATTTCACCTCTGAA 60 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGCGGGAATCGATACGCAGAAGCAGCTTCTCTCTCTGATCCGCGATTTCACCTCTGAA 60 Query 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGA-GGATCGAGATTTTGCAATC 119 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAA-ACGGATCGAGATTTTACAATC 119 Query 120 GGAAATCGAAGCAGCGAATTCAGAAGTTGAAAATGCGAAGCGTATCAAAGAAGTGGCGGA 179 |||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 120 GGAAGTTGAAGCAGCGAATTCAGAAGTTGAGCATGCGAAGCGTATCAAAGAAGTAGCGGA 179 Query 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATGCTACGATTCAATCTCT 239 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATTCTACGATTCAATCTCT 239 Query 240 GGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGC 299 |||| | | |||||||||||||||||||| ||||| |||||| |||||||||||| Sbjct 240 CGAGG-A----TCAGTCTTCTTCAGGATGAAGTAACTACTATTGGCAATGAAGTTGATGC 294 Query 300 TCTTAAGAACAAGGAAGGATTTTTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 295 TCTTAAGAACAAGGAAGGGTTACTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 354 Query 360 CAAGGAGATAAGG 372 ||||||||||||| Sbjct 355 CAAGGAGATAAGG 367 Score = 429 bits (232), Expect = 2e-119 Identities = 380/446 (85%), Gaps = 31/446 (7%) Strand=Plus/Plus Query 369 AAGGGAGTTCCAGAGAACAGTAGATTTGACTTTTGG-CAATGATGATAGTACTGGCATAA 427 |||||||||||||| ||||||||||| || ||||| | |||| |||||||||||||||| Sbjct 435 AAGGGAGTTCCAGAAAACAGTAGATTCGA-GTTTGGCCGATGAGGATAGTACTGGCATAA 493 Query 428 CAC-CAAATGTCAAAGCTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTATCAAGGGA 486 | | ||||| ||||||||||||||||| | ||||||| ||||| ||||||||| || || Sbjct 494 C-CGCAAATATCAAAGCTTTTGAGGATTGCTCTGGAGATGATTTAGAAGCTATTAA--GA 550 Query 487 A--TGCTATCTGATTTA-AGTTCTCAATTAGAAAAAGAGGAAGAAGGATACCTGGCTGAG 543 | ||||||||||| || | ||||||||| | ||||||||||||||||||||||||||| Sbjct 551 ATTTGCTATCTGATGTACA-TTCTCAATTGGCGAAAGAGGAAGAAGGATACCTGGCTGAG 609 Query 544 CAGAAGATACAAGAACAGCTGCAGAAGGAGCTCGATGACTATGAGAAGAAAATGTCACTC 603 |||||||| ||||||||||||||||||||| | ||||| |||||||| |||||||||||| Sbjct 610 CAGAAGATGCAAGAACAGCTGCAGAAGGAGTTTGATGAGTATGAGAAAAAAATGTCACTC 669 Query 604 ATGGAGGCCATAACAGACAAAACGAATTCAGTGCAA--GTTCTCGCTAGATATCCTTTAA 661 || |||||||||||||| ||||| |||||||| ||| || | || || | | || Sbjct 670 ATTGAGGCCATAACAGAGAAAACAAATTCAGTTCAAACGT-C-CG--AG-T-TGG---AA 720 Query 662 TCCCATTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAAGAGATGCCGATGCCAA 721 | | | | | ||||||||||| ||||||||||||||||||| ||||||||| ||| Sbjct 721 -C--AG-A--T-A--TTGGCTTCACTCGGGGAGGAGCTGCAAAAGAAATGCCGATGTCAA 771 Query 722 CATTGCCAGGCAGAAAATTTGGAAGTCTTGAGCTTACTTCTTCAGGGAGATCAAGATATG 781 || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 772 CAATGCCAAGCAGAGAATTTGGAAGTTTTGAGCTTACTTCTTCAGGGAGATCAAGATAAG 831 Query 782 GAGGTGTCTTAGTTAAAAGCCAATCT 807 ||||||||||||||||| |||||||| Sbjct 832 GAGGTGTCTTAGTTAAA-GCCAATCT 856 > AT1G51430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19068241-19069776 FORWARD LENGTH=893 Length=893 Score = 248 bits (134), Expect = 6e-65 Identities = 247/297 (83%), Gaps = 26/297 (9%) Strand=Plus/Plus Query 204 TGAATTGTCTTTGAACGATGCTACGATTCAATCTCTGGAGGCAAGGATTAGTCTTCTTCA 263 ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 174 TGAGTTGTCTTTGAACGATTTTACTATTCAATCTCTGGAGGCAAGGATTAGTCTTCTTCA 233 Query 264 GGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGCTCTTAAGAACAAGGAAGGATTTTT 323 |||||||||||||||| ||||| ||||| |||||||||| | Sbjct 234 GGATGAAGTTTCTACTAATGGCATTGAAGATGATGCTCTT--------------A----- 274 Query 324 CAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAACAAGGAGATAAGGGAGTTCCAGAG 383 |||||||||||||||||| ||||||||||| ||| |||||||| || ||||||| | Sbjct 275 -AGAGATCAGTTTATAAGCTAAATGGAAGAATTGATCAAGGAGA-AA---AGTTCCATAA 329 Query 384 AAC-AGTAGATTTGACTTTTGGCAATGATGATAGTACTGGCATAACACCAAATGTCAAAG 442 ||| | ||||||||| | | |||| |||||| | |||||||||||| ||||| ||||| Sbjct 330 AACTA-TAGATTTGAGTGTGGGCAGTGATGAGACTACTGGCATAACTGCAAATAACAAAG 388 Query 443 CTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTATCAAGGGAATGCTATCTGATT 499 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 CTTTTGTGGATGGTTCTGGAGCTGATTCAGAAGCTATCAAGGGAATGCTATCTGATT 445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39283102954 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5