BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484617
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28420.1 | Symbols: | Putative membrane lipoprotein | chr3:... 944 0.0
> AT3G28420.1 | Symbols: | Putative membrane lipoprotein | chr3:10654470-10655388
REVERSE LENGTH=919
Length=919
Score = 944 bits (511), Expect = 0.0
Identities = 698/781 (89%), Gaps = 42/781 (5%)
Strand=Plus/Plus
Query 1 ATagagagaacaatggaaatgaagagagacattagagtggagaagaaggaggaagagaaC 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 53 ATAGAGAGAACAATGGAGATGAAGAGAGACATTAGAGT---------GGAGGAAGAGAAC 103
Query 61 ATGTGTACTTCATTGTTGACTGCAGTTGTTGTTCTTTCAATGGCTTGTCTTAAACACTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 ATGTGTACTTCATTGTTGACTGCAGTTGTTGTTCTTTCAATGGCTTGTCTTAAACACTTC 163
Query 121 TCTTCTGTATCGTATTTGATCGAGCAATGGCGTTCTTTGGTCTTTCTTCTACTCAACGTC 180
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 164 TCTTCTGTATCGTATTTGATCGAGCAATGGCGTTCGTTGGTGTTTCTTATACTCAACGTC 223
Query 181 GTTCTCTTAGCCGTTTACTTTACCTCGACTCGTCCTAACC-CCGGAGGGACTCATGATTT 239
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 224 GTTCTCTTAGCCGTTTACTTTACCTCGACTCGTCCTAACCTCGGGA-GGAGTCATGATTT 282
Query 240 CAAGACTCGTCGAGGAGGTAGATTGAGGATGATGC--GAG----AG---AAG---AAGAA 287
||||||||||||||||||||||||||| ||||||| ||| || ||| |||||
Sbjct 283 CAAGACTCGTCGAGGAGGTAGATTGAGAATGATGCGAGAGAAAAAGAATAAGATTAAGAA 342
Query 288 TAAGAAGACAAGGATGGTGGTGGAACCGGCTTGTTCTGATCAAGATTTCGTAGTCGTTGA 347
|||||||||||| ||||||||||||||||||||| ||| |||| |||| || | |||||
Sbjct 343 GAAGAAGACAAGGGTGGTGGTGGAACCGGCTTGTTTTGACCAAGGTTTCTTACTTGTTGA 402
Query 348 GCCAAAGGAAGTGATCAAGAAGTGTGTTTTAGTGGAGGAGACGAAAAGGGTTTGTCCTGA 407
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 403 GCCAAAGGAAGTGATCAAGAAGTGTGTTTTAGTGGAGGAGACGAAAAGAGTTTGCCCTAA 462
Query 408 ATTCAAGGAAACTGTGAAAGATTGCTTGTTTCACAAGAAAGAAGTAGACTTTAAAGGAGA 467
||| |||||||||||||||||||||||||||||||||||||| |||| | ||| |||||
Sbjct 463 ATTTGAGGAAACTGTGAAAGATTGCTTGTTTCACAAGAAAGAAATAGAGTATAATGGAGA 522
Query 468 AGAAGATGAATTCGAGCCAGGGAGGTTATCGAATGAGGAGCTGAACGAGAGAGTAGAAGC 527
|||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 523 AGAAGATGAATTTGAGCCAGGGAGGTTATCCAATGAGGAGTTGAACGAGAGAGTTGAAGC 582
Query 528 GTTCATCACGACGTTCAGACAACATTTGGTGCTTGATGCGCAAA-GAGGTAGAGATAGAG 586
||||||||||||||| ||||||||||||||||| |||||| | | |||||||||| ||||
Sbjct 583 GTTCATCACGACGTTTAGACAACATTTGGTGCTAGATGCG-AGACGAGGTAGAGACAGAG 641
Query 587 AAACCGACCAGAAGATGAGATCAAAAGACTCTGACATTAGCTTTTTAGGTCGGGAAGTCG 646
|||| || |||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 642 AAACTGATCAGAAGATGAGACCAAAAGACTCTGACAGTAGCTTTTTAGTTCGGGAAGTCA 701
Query 647 CTTGTTCGGTTTAAGAGTTTCTCT-T-C--T-T-------A----AA-ATTCGTTCGGTT 689
|||||| ||||||||||||||||| | | | | | || ||||||||||||
Sbjct 702 CTTGTTTGGTTTAAGAGTTTCTCTCTACAATCTTTTTTTCATCTTAAGATTCGTTCGGTT 761
Query 690 TTGTTCGTTCTTTGGCTTCGTTTATTTTATGAGTTTGAGCTAATAGCTCAAAAGATCGCA 749
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 762 TTGTTCGTTCTTTGGCTTCGTTTCTTTTGTGAGTTTGAGCTAATAGCTCAAAAGATCGCA 821
Query 750 T 750
|
Sbjct 822 T 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5