BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484619
Length=2065
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28450.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3038 0.0
> AT3G28450.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:10667262-10669377 FORWARD LENGTH=2116
Length=2116
Score = 3038 bits (1645), Expect = 0.0
Identities = 1953/2097 (93%), Gaps = 40/2097 (2%)
Strand=Plus/Plus
Query 1 TTCATTGGCAGATACAC-AAATCTTTAATTCTTAAACCAAACCCAGaaa-aa------aa 52
||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||
Sbjct 23 TTCATTGGCAGATACACAAAATCTTTAATTCTTAATCCAAACCCAGAAACAACCTCTGAA 82
Query 53 a-aaCTTCATCATCAATGGAAGAGATCGGGTCAAAACCAAGAAAGTTA-------T-T-C 102
| ||||||||||| ||| |||||||||| |||||||||||||||||| | | |
Sbjct 83 ACCACTTCATCATCCATGAAAGAGATCGGCTCAAAACCAAGAAAGTTACTTCCTTTATGC 142
Query 103 TTCATCTTCTTCCT-T-TGTTT-TTCCTCTGTTATGGCTGCAGATGAAGGCGACATAAGA 159
|||||| ||||||| | | ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 143 TTCATCATCTTCCTCTGTTTTTGTTCCTCTGTTATGGCTGCAGATGAAGACGACATAAGA 202
Query 160 TGCTTAAGAGGACTCAAAACCTCTCTCACCGATCCTCAAAACGCGTTGAAATCATGGAAC 219
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 203 TGCTTAAGAGGACTCAAAGCATCTCTCACAGATCCTCAAAACGCGTTGAAATCATGGAAC 262
Query 220 TTCGACAACACAACTCTTGGGTTCCTCTGTAACTTCGTTGGTGTGTCTTGTTGGAACAAT 279
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 263 TTCGACAACACAACTCTTGGGTTTCTCTGTAACTTCGTTGGTGTGTCTTGTTGGAACAAT 322
Query 280 CAAGAAAATAGGGTTATCAATCTTGAGCTTCGTGACATGGGTTTATCTGGTAAAATCCCA 339
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 323 CAGGAGAATAGGGTTATCAATCTTGAGCTTCGTGATATGGGTTTATCTGGTAAAATCCCA 382
Query 340 GATTCTCTTCAATACTGTGCGAGTTTACAAAAACTTGATCTTTCTAGTAATCGATTGTCT 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GATTCTCTTCAATACTGTGCGAGTTTACAAAAACTTGATCTTTCTAGTAATCGATTGTCT 442
Query 400 GGTAATATCCCTAAAGAGTTGTGTAATTGGTTACCGTTTTTGGTGTCTCTTGATTTGTCG 459
||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 443 GGTAATATCCCTACAGAGTTGTGTAATTGGTTACCTTTTTTGGTATCTCTTGATTTGTCA 502
Query 460 AATAATGAATTGAATGGTGAGATTCCTCCTGATTTAGCTAAGTGTAGCTTTGTGAACTCT 519
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 503 AACAATGAATTGAATGGTGAGATTCCTCCTGATTTAGCTAAGTGTAGCTTTGTGAATTCT 562
Query 520 TTGGTTTTGTCTGATAACCGGCTTTCCGGTCAAATCCCGGTTCAGTTCTCGGCTTTAGGG 579
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 563 TTGGTTTTGTCTGATAACCGGCTTTCGGGTCAAATCCCGGTTCAGTTCTCGGCTTTAGGG 622
Query 580 AGGTTAGGGAGGTTCTCTGTTGCTAATAATGATCTCTCAGGTCGCATTCCTGTCTTCTTT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 623 AGGTTAGGGAGGTTCTCTGTTGCTAATAATGATCTCTCAGGTCGCATTCCTGTGTTCTTT 682
Query 640 AGCTCACCGAGTTATTCCTCTGATGACTTTAAG-GGGAATAAAGGTCTTTGTGGTCGTCC 698
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 683 AGCTCACCGAGTTATTCCTCTGATGATTTTA-GTGGGAATAAAGGTCTTTGTGGTCGTCC 741
Query 699 TTTGTCTTCGAGTTGCGGTGGATTGAGTAAGAAGAATCTTGCGATTATCATTGCAGCTGG 758
||| ||||||||||| ||||| || |||||||||||||||| ||| || |||||||||||
Sbjct 742 TTTATCTTCGAGTTGTGGTGGTTTAAGTAAGAAGAATCTTGGGATAATAATTGCAGCTGG 801
Query 759 TGTGTTTGGTGCTGCTGCGTCGATGTTTTTGGCTTTTGGGATTTGGTGGTATTACCATTT 818
|||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct 802 TGTGTTTGGTGCTGCTGCATCAATGTTGTTAGCTTTTGGGATTTGGTGGTATTATCATTT 861
Query 819 GAAGTGGACAAGAAGACGAAGAAGCGGTTTAACCGAAGTAGGAGTTAGCGGTTTGGCGAA 878
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 862 GAAGTGGACAAGGAGACGAAGAAGCGGTTTAACCGAAGTAGGAGTTAGCGGTTTAGCGCA 921
Query 879 GAGACTTCGTAGTCATAAGCTTACTCAAGTTTCTTTGTTTCAGAAGCCTTTGGTTAAGGT 938
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 922 GAGACTTCGTAGTCATAAGCTTACTCAAGTGTCTTTGTTTCAGAAGCCTTTGGTTAAAGT 981
Query 939 TAAACTTGGGGATTTGATGGCTGCAACTAATAATTTCAGCTCGGGGAACATTATTGTTTC 998
||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||
Sbjct 982 TAAACTTGGGGATTTGATGGCTGCAACTAATAACTTCAACTCAGAGAACATTATTGTTTC 1041
Query 999 CACTAGGACTGGAACAACGTATAAGGCGCTTCTTCCGGATGGTTCAGCGCTTGCGGTTAA 1058
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1042 CACTAGGACTGGGACTACCTATAAGGCGCTTCTTCCGGATGGTTCAGCGCTTGCGGTGAA 1101
Query 1059 GCATTTAAGCACGTGTAAGCTCGGGGAGAGGGAGTTTCGGTATGAGATGAATCAGTTGTG 1118
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1102 GCATTTGAGTACGTGTAAGCTCGGGGAAAGGGAGTTTCGGTATGAGATGAATCAGCTATG 1161
Query 1119 GGAGCTTCGTCATCCTAACTTAGCGCCACTTCTTGGATACTGCGTTGTGGAAGAAGATAA 1178
||||||||||||| |||||||||| || |||||||| | |||||||||||||||||| ||
Sbjct 1162 GGAGCTTCGTCATTCTAACTTAGCACCGCTTCTTGGTTTCTGCGTTGTGGAAGAAGAGAA 1221
Query 1179 ACTTCTTGTTTACAAGTACATGTCTAATGGGACGCTTCACTCGTTGCTGGATTCAAAT-G 1237
|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct 1222 GTTTCTTGTTTACAAGTATATGTCTAATGGGACACTTCACTCGTTGTTGGATTCAAATAG 1281
Query 1238 GGGTTGAATTAGATTGGTCTACTCGGTTTAGGATTGGTTTAGGTGCTGCAAGGGGTTTAG 1297
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1282 GGGT-GAATTAGATTGGTCGACTCGGTTTAGGATTGGTTTAGGTGCTGCAAGAGGTTTAG 1340
Query 1298 CTTGGCTTCACCATGGATGTCGACCTCCGATACTTCACCAAAACATTTGTTCAAGTGTGA 1357
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1341 CTTGGCTTCACCATGGATGTCGACCTCCAATTCTACACCAAAACATTTGTTCAAGTGTGA 1400
Query 1358 TTCTCATTGACGAGGATTTCGATGCAAGGATTATAGATTCAGGGCTTGCAAGGCTTATGG 1417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1401 TTCTCATTGACGAGGATTTCGATGCAAGGATAATAGATTCAGGGCTTGCAAGGCTTATGG 1460
Query 1418 TTCCCTCGGATAACAATGAGAGTAGTTTCATGACTGGTGATTTAGGAGAGTTTGGTTATG 1477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1461 TTCCCTCGGATAACAATGAGAGTAGTTTCATGACTGGTGACTTAGGAGAGTTTGGTTATG 1520
Query 1478 TAGCTCCAGAGTATTCTACTACAATGCTAGCCTCACTAAAAGGCGATGTATATGGACTCG 1537
||||||| || |||||||| ||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1521 TAGCTCCTGAATATTCTACCACAATGCTAGCATCATTAAAAGGTGATGTATATGGACTCG 1580
Query 1538 GTGTTGTCCTCTTGGAGTTGGCCACAGGGCTAAAAGCTCTAGGACGCGAAGGCTTTAAAG 1597
|||||||||||||||||||||| ||||||||||||||| ||||| | ||||| |||||||
Sbjct 1581 GTGTTGTCCTCTTGGAGTTGGCTACAGGGCTAAAAGCTGTAGGAGGTGAAGGTTTTAAAG 1640
Query 1598 GGAGTTTGGTAGATTGGGTGAAACAGCTCGAAAGCTCAGGAAGAATCGCTGAGACATTCG 1657
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1641 GGAGTTTGGTGGATTGGGTGAAACAGCTTGAAAGCTCAGGTAGAATCGCTGAGACATTCG 1700
Query 1658 ATGAAAACATTCGAGGGAAAGGACATGACGAAGAAATCTTGAAATTTGTTGAGATTGCT- 1716
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1701 ATGAAAACATTCGAGGGAAAGGACATGACGAAGAGATCTCGAAATTTGTTGAGATTGCTC 1760
Query 1717 TGTAACTGTGTGAGTTCAAGACCTAAAGAGAGATGGTCAATGTTTCAGGCATACCAGTCA 1776
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 T-TAACTGTGTGAGTTCAAGACCTAAAGAGAGATGGTCAATGTTTCAGGCATACCAGTCA 1819
Query 1777 TTGAAAGCTATTGCTGAGAAACAAGGCTATTCGTTCTCAGAACAAGACGACGACTTCCCT 1836
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1820 CTGAAAGCTATTGCTGAGAAACAAGGCTATTCGTTCTCCGAACAAGACGACGACTTCCCT 1879
Query 1837 TTGATCTTCGACACGCAAGAGAACGAGACAGTTTGAAAATGAACCTTT-ATGATG-GAGG 1894
||||| |||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||
Sbjct 1880 TTGATTTTCGACACGCAAGAGAACGAGAAAGTGTGAAAATGAACCTTTTATGATACGAGG 1939
Query 1895 AGGAAATAAGAGAGTATAATTATTTGTTGTCTATATTTTCCTGCACTACTTGTAGAGAGA 1954
||||| |||||| |||||||||||||||||||||| || || |||||||||||||| |
Sbjct 1940 AGGAAGTAAGAG--TATAATTATTTGTTGTCTATATCATCTTGTACTACTTGTAGAGACA 1997
Query 1955 CT-T-T---ATTGTAAAAACAGAAGTGTATATGTTATTTGTTTTCTCTTGTATCAAA-TC 2008
|| | | ||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1998 CTATATGTTATTGTAAAAACAGAAATGTATATGTTATTTGTTTTCTCTTGTGTCAAAGTC 2057
Query 2009 TTTAAGACATGTTATGTTTTGCAAGTGTGTTCTTTTCTATAGTCTTGGAAGAGTGAC 2065
|||| |||||||||||| |||||||||||| |||| ||||||| |||||||||||||
Sbjct 2058 TTTA-GACATGTTATGTGTTGCAAGTGTGT-CTTT-CTATAGTATTGGAAGAGTGAC 2111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102358911255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5