BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484620
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28455.1 | Symbols: CLE25 | CLAVATA3/ESR-RELATED 25 | chr3:1... 1149 0.0
> AT3G28455.1 | Symbols: CLE25 | CLAVATA3/ESR-RELATED 25 | chr3:10669888-10671163
REVERSE LENGTH=810
Length=810
Score = 1149 bits (622), Expect = 0.0
Identities = 759/820 (93%), Gaps = 30/820 (4%)
Strand=Plus/Plus
Query 1 AGGGCCAATCACGGATTTGTCTTCCAAGGTATATAAAAACAACCTAAATGCTTGTTTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGGCCAATCACGGATTTGTCTTCCAAGGTATATAAAAACAACCTAAATGCTTGTTTTTT 60
Query 61 GCTTCCCATTTCGCTTTCCACTTTTTTGAGCCTCTTCTGTCCAAAGATCTCTCTCTCTAT 120
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GCTTCCCATTTCGCTTTCCCCTTTTTTGAGCCTCTTCTGTCCAAAGATATCTCTCTCTAT 120
Query 121 TTATGTGACAGTCACTTCACAAACATCATGGATGTTCTGCTCAGTTTATTCTTGGGTTTG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTATGTGACAGTCACTTCACCAACATCATGGATGTTCTGCTCAGTTTATTCTTGGGTTTG 180
Query 181 GTTGGTCAGTTGTTTATGTTAAACAGGAAGCTGTAGGGACATCGGTTGCAGTATGGGTGG 240
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 181 GTTGGTCAGTTGTTTATGTTAAACAGGAAGCTGTAGGGACATAGGTTTCAGTATGGGTGG 240
Query 241 TAATGGCATTAGAGCTTTGGTTGGAGGTG-TTGTTTCTTTGGGTTTGATTGTGTTTCTTC 299
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 241 AAATGGCATTAGAGCTTTGGTTGGAG-TGATTGCATCTTTGGGTTTGATTGTGTTTCTTC 299
Query 300 TTGTCGGTATCTTAGCAAACTCTGCACCAAGTGTTCCATCAACAGAACATGTCAAGACTT 359
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 300 TTGTCGGTATCTTAGCAAACTCTGCACCAAGTGTTCCATCATCAGAAAATGTCAAGACTT 359
Query 360 TGCGGTTTAGTGGTAAGGATGTGAATCTGTTTCATGTGAGCAAGCGAAAAGTTCCAAATG 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 TGCGGTTTAGTGGTAAGGATGTGAATCTGTTTCATGTAAGCAAGCGAAAAGTTCCTAATG 419
Query 420 GACCTGATCCTATCCACAACAGGAAAGCAGAAACTTCGAGACGGCCACCAAGAGTATGAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GACCTGATCCTATCCACAACAGGAAAGCAGAAACTTCGAGACGGCCACCAAGAGTATGAT 479
Query 480 ATA-ACTGTAATGTTTTATCTCATGCGGGCTTCGTTCATTTTCGGTTATTTTCCTACCGT 538
|| |||||||||||| || ||||||||||||||||||||||||| | ||||| ||||||
Sbjct 480 ATTGACTGTAATGTTT-ATGTCATGCGGGCTTCGTTCATTTTCGGGT-TTTTC-TACCGT 536
Query 539 TTCGAGACACAGTGAAGTATGCGACCTCTCAATTACAGTT-CCACGTCAAGAAGCTACTA 597
|| |||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||
Sbjct 537 CTCAAGACACAGTGAAGTATTCAACCTCTCAATTAC-GTTTCCACGTCAAGAAGCTACTA 595
Query 598 TTTTTTCTGGGGCAATCCAT-AACTTCAGAT-TCAGAGATATGCTATGAACTCATAGCTT 655
||||||||| ||||||| || |||||||||| | ||||||||||||||||||||||||||
Sbjct 596 TTTTTTCTGAGGCAATC-ATTAACTTCAGATGTTAGAGATATGCTATGAACTCATAGCTT 654
Query 656 TGTGAAAGGTCTCTTCTTACTCTGTAGCATTTTGGAAGGTGAAGTCTTTGCTCTCTCTTA 715
|||||| | ||| | || || |||| ||||||||||||||||||| |||||||||||
Sbjct 655 TGTGAA-G-TCT-TGCT--CT--GTAGAATTTTGGAAGGTGAAGTCTCTGCTCTCTCTT- 706
Query 716 TA-TTTTGGAACACTTGTGTCTAAAGATTGAAAA-CATTCAGAAGATA-TTA--AAGACT 770
| |||||||||| |||||||||||||||||||| |||||||||||| || |||| |
Sbjct 707 TCGTTTTGGAACA-TTGTGTCTAAAGATTGAAAATCATTCAGAAGATTGTTGCTAAGA-T 764
Query 771 CTTAAGGGCTT-TGTAGG-GTTTT-GTAATAACATTTGTA 807
|||| | ||| | || | ||||| |||||||||||||||
Sbjct 765 ATTAAAGACTTCT-TAAGAGTTTTTGTAATAACATTTGTA 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5