BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484622 Length=1031 Score E Sequences producing significant alignments: (Bits) Value AT3G28470.1 | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-l... 1478 0.0 > AT3G28470.1 | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-like superfamily protein | chr3:10674508-10675724 REVERSE LENGTH=1025 Length=1025 Score = 1478 bits (800), Expect = 0.0 Identities = 959/1035 (93%), Gaps = 14/1035 (1%) Strand=Plus/Plus Query 1 ATGGGAAGGCCTCCTTGTTGTGACAAATCAAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60 Query 61 GAAGATGCTAAGATCCTCGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGTTTGATC 120 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 GAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATC 120 Query 121 CCCAAAAAAGCAGGCCTGAATCGATGCGGAAAGAGCTGTAGACTGAGATGGACTAATTAC 180 |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 121 CCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTAC 180 Query 181 TTAAGACCTGACCTTAAACATGACAGTTTCTCTCCCCAAGAAGAAGAGCTTATCATTGAG 240 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 181 TTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAG 240 Query 241 TGTCACAGAATCATTGGCAGCAGGTGGTCTTCGATTGCTCGAAAGCTTCCAGGAAGAACG 300 ||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 241 TGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACG 300 Query 301 GATAACGATGTGAAAAACCATTGGAACACAAAGCTGAAGAAGAAACTGATGAAAATGGGG 360 ||||| |||||||| || || ||||||||||||||||||||||| ||||||||||||||| Sbjct 301 GATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGG 360 Query 361 ATAGATCCGGTGACTCATAAACCAGTTTCTCAAGTCCTTTCAGAATTCAGAAACATTAGT 420 ||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| Sbjct 361 ATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGC 420 Query 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCAAACAACTCTATACTCACACAATCT 480 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCC 480 Query 481 AACTCAGCCTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATT--A-CAAC 537 |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 481 AACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAAC 540 Query 538 TCTTCAATGATGTTTACAAATTCCGCTTCGTCTGAATTCCAAACTACTCCATTTCATTTC 597 ||| |||||||||||||||||| | | ||||| | |||||||||||||||||||||| Sbjct 541 TCTCCAATGATGTTTACAAATT---C--C-TCTGAGTACCAAACTACTCCATTTCATTTC 594 Query 598 TCTGGCCATCCAAGTAATCTACTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 657 | | ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 595 TATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 654 Query 658 TC-AGCTAGTATCACTCAGCCAAACCAAGTGCCTCAAACACCGGTTACTAACTTCTACTG 716 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 655 TCTA-CTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTG 713 Query 717 GAGCGATTTCCTTCTCTCGGATCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACAAGCGA 776 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 714 GAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGA 773 Query 777 CCTCACTTTCGCGCAAAACGAGCATCATTTCAACAACCAAGCCGAATACATCTCTCAGAA 836 ||||||||| |||| ||||| ||||||||||||| | ||||||||||||||||||| || Sbjct 774 CCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAA 833 Query 837 CATCGATTCAAACGCCTCGGTAACATGTCATTCCGCGAGTTCATTCGTGGACGAAATATT 896 |||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| | Sbjct 834 CATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACT 893 Query 897 GGATAAAGACCAAGAGATGCTATCACAATTTCCTCAACTCTTGAATGATTTCGATTATTA 956 |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 894 AGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTA 953 Query 957 GATCTCTTCTTTTCATTATTGTTGTTGTTACTTATCTTGTAACTGATTTATGATTTTCAA 1016 |||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||| Sbjct 954 GATCCCTTCTTTTCCCTATTGTTGTT---ACTTCTCTTGTAACTGGTTTATGATTTTCAA 1010 Query 1017 GAACTATGATTTTTC 1031 |||||||| |||||| Sbjct 1011 GAACTATGTTTTTTC 1025 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50535551882 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5