BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484622
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28470.1 | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-l... 1478 0.0
> AT3G28470.1 | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-like
superfamily protein | chr3:10674508-10675724 REVERSE LENGTH=1025
Length=1025
Score = 1478 bits (800), Expect = 0.0
Identities = 959/1035 (93%), Gaps = 14/1035 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGGCCTCCTTGTTGTGACAAATCAAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60
Query 61 GAAGATGCTAAGATCCTCGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGTTTGATC 120
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATC 120
Query 121 CCCAAAAAAGCAGGCCTGAATCGATGCGGAAAGAGCTGTAGACTGAGATGGACTAATTAC 180
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 121 CCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTAC 180
Query 181 TTAAGACCTGACCTTAAACATGACAGTTTCTCTCCCCAAGAAGAAGAGCTTATCATTGAG 240
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 181 TTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAG 240
Query 241 TGTCACAGAATCATTGGCAGCAGGTGGTCTTCGATTGCTCGAAAGCTTCCAGGAAGAACG 300
||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 TGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACG 300
Query 301 GATAACGATGTGAAAAACCATTGGAACACAAAGCTGAAGAAGAAACTGATGAAAATGGGG 360
||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGG 360
Query 361 ATAGATCCGGTGACTCATAAACCAGTTTCTCAAGTCCTTTCAGAATTCAGAAACATTAGT 420
||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 361 ATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGC 420
Query 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCAAACAACTCTATACTCACACAATCT 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCC 480
Query 481 AACTCAGCCTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATT--A-CAAC 537
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 481 AACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAAC 540
Query 538 TCTTCAATGATGTTTACAAATTCCGCTTCGTCTGAATTCCAAACTACTCCATTTCATTTC 597
||| |||||||||||||||||| | | ||||| | ||||||||||||||||||||||
Sbjct 541 TCTCCAATGATGTTTACAAATT---C--C-TCTGAGTACCAAACTACTCCATTTCATTTC 594
Query 598 TCTGGCCATCCAAGTAATCTACTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 657
| | ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 595 TATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 654
Query 658 TC-AGCTAGTATCACTCAGCCAAACCAAGTGCCTCAAACACCGGTTACTAACTTCTACTG 716
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 655 TCTA-CTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTG 713
Query 717 GAGCGATTTCCTTCTCTCGGATCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACAAGCGA 776
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 714 GAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGA 773
Query 777 CCTCACTTTCGCGCAAAACGAGCATCATTTCAACAACCAAGCCGAATACATCTCTCAGAA 836
||||||||| |||| ||||| ||||||||||||| | ||||||||||||||||||| ||
Sbjct 774 CCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAA 833
Query 837 CATCGATTCAAACGCCTCGGTAACATGTCATTCCGCGAGTTCATTCGTGGACGAAATATT 896
|||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
Sbjct 834 CATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACT 893
Query 897 GGATAAAGACCAAGAGATGCTATCACAATTTCCTCAACTCTTGAATGATTTCGATTATTA 956
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 894 AGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTA 953
Query 957 GATCTCTTCTTTTCATTATTGTTGTTGTTACTTATCTTGTAACTGATTTATGATTTTCAA 1016
|||| ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 954 GATCCCTTCTTTTCCCTATTGTTGTT---ACTTCTCTTGTAACTGGTTTATGATTTTCAA 1010
Query 1017 GAACTATGATTTTTC 1031
|||||||| ||||||
Sbjct 1011 GAACTATGTTTTTTC 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5