BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484624
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28480.2 | Symbols: | Oxoglutarate/iron-dependent oxygenase... 1596 0.0
AT3G28490.1 | Symbols: | Oxoglutarate/iron-dependent oxygenase... 832 0.0
> AT3G28480.2 | Symbols: | Oxoglutarate/iron-dependent oxygenase
| chr3:10676041-10678305 REVERSE LENGTH=1243
Length=1243
Score = 1596 bits (864), Expect = 0.0
Identities = 1137/1258 (90%), Gaps = 62/1258 (5%)
Strand=Plus/Plus
Query 56 GTCTTGGTCTTCTT--CTTCACCAACAAGTCTTTCTCACGAATTTTTTCCCGATGGATTC 113
|||||||||||||| | || |||||||||||||||||||| ||||||||
Sbjct 1 GTCTTGGTCTTCTTCGCACCAACAACAAGTCTTTCTCACGAA---------AATGGATTC 51
Query 114 TCGGAATTTTCTCGCATTTTCCCTCTGTTTTCTCTTCATTCTCTCC-AAAATCTCATCTG 172
||||| |||||||||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct 52 TCGGATTTTTCTCGCATTTTCCCTCTGTTTTCTCTTCACTCTC-CCTCTAATTTCATCTG 110
Query 173 CTCCTAACCGCTTCCTCACTCGATCGAGTAACAATAGAGATGGGTCTGTGATAAAGATGA 232
| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct 111 CACCTAACCGCTTCCTCACTAGATCGAGTAACACTAGAGATGGGTCAGTGATAAAGATGA 170
Query 233 AAACAAGTGCTTCTTCTTTTGGGTTTGATCCAACTCGTGTTACTCAACTCTCTTGGACTC 292
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 171 AAACAAGTGCTTCTTCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTC 230
Query 293 CTAGAGCTTTTTTGTATAAAGGGTTTCTTTCTGATGAGGAATGTGATCACTTTATCAAAT 352
|||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 231 CTAGAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAAT 290
Query 353 TGGCGAAAGGAAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAGAGTGTAG 412
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 291 TGGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAGAGTGTTG 350
Query 413 AGAGTGAAG-TAC-GCA-CAAGTTCTG-GA-AT-GTTT----TT-ATC-CAAA-A-G-A- 456
||||||||| | | | | || | || | || || || |||| | | |
Sbjct 351 AGAGTGAAGATTCTGTTTCT-GTGGTTAGACAAAGTAGCAGCTTCATTGCAAATATGGAT 409
Query 457 ---C-AG-GAT-GAT-AT-T-GTA-GCAAATGTCGAGGCAAAACTTGCTGCGTGGACCTT 506
| || ||| ||| || | ||| | || ||| ||||||||||||||||||||||||||
Sbjct 410 AGTCTAGAGATTGATGATATAGTAAGTAA-TGTGGAGGCAAAACTTGCTGCGTGGACCTT 468
Query 507 TATTCCCGAAGAAAATGGGGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTA 566
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCTTCCCGAAGAGAATGGTGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTA 528
Query 567 TGAACCGCATTTTGACTACTTTCACGACCAGGCCAATCTAGAGCTCGGTGGTCATCGGAT 626
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 529 TGAACCGCATTTTGACTACTTTCACGACCAGGCTAATCTAGAGCTCGGTGGTCATCGGAT 588
Query 627 CGCCACTGTATTGATGTACTTGTCCAATGTTGAAAAGGGCGGAGAAACAGTGTTTCCCAT 686
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 TGCCACAGTATTGATGTACTTGTCCAATGTTGAAAAGGGAGGAGAAACAGTGTTTCCCAT 648
Query 687 GTGGAAGGGTAAAACAACTCAGTTGAAAGACGATAGCTGGACCGAATGTGCAAAACAAGG 746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GTGGAAGGGTAAAGCAACTCAGTTGAAAGACGATAGCTGGACCGAATGTGCAAAACAAGG 708
Query 747 CTATGCAGTGAAACCAAGGAAAGGGGACGCATTGTTGTTCTTCAATCTACACCCAAATGC 806
||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 709 CTATGCAGTGAAACCGAGGAAAGGGGATGCATTACTGTTCTTCAATCTTCACCCAAATGC 768
Query 807 AACCACAGATTCAAATAGCTTACATGGAAGCTGTCCGGTGGTTGAGGGAGAGAAATGGTC 866
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 769 AACCACAGATTCAAATAGCTTACATGGAAGCTGTCCAGTGGTTGAGGGAGAGAAATGGTC 828
Query 867 AGCAACCAGATGGATTCACGTTAGGTCATTCGACAGAGCGTTTAGTAAGCAATCTGGATG 926
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 829 AGCAACCAGATGGATTCACGTTAAGTCATTCGAAAGAGCGTTTAATAAGCAATCTGGATG 888
Query 927 TGTGGACGAGAATGTGAGCTGCGAAAAATGGGCAAAGGCAGGGGAATGCCAGAAGAATCC 986
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TATGGACGAGAATGTGAGCTGCGAAAAATGGGCAAAGGCAGGGGAATGCCAGAAGAATCC 948
Query 987 AACATACATGGTTGGTTCAGACAAAGACCATGGATATTGCAGAAAGAGTTGCAACGCTTG 1046
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 949 AACATACATGGTTGGTTCAGACAAAGACCATGGATATTGCAGAAAGAGTTGCAAAGCTTG 1008
Query 1047 CTCATCTTAAGAACAACGACAACAAGTAAAATCAAAGCTCTTATCAAAGGATCAAAATTT 1106
||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 1009 CTCATCTTAAGAACAAC-A-A----GTAAAATCAAAGCTCTTATTAAAGGATCAAAATTT 1062
Query 1107 TTGTATAGCGAAAAACCGGGTTTTCGCCATTCGGGTAGATAAACATTTCGTCAATAGAAT 1166
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1063 TTGTATAGCGAAAAACCGGGTTTTCGCCATTCGGGTAGATAAACATATCGTCAATAGAAT 1122
Query 1167 GAATCAT--AGAACAATATACTaaaaaaaTAATTCTGATTCTATGTTAC------CA-GT 1217
||| || ||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 1123 GAAAAATTTAGAACTATATACTAAAAAAATAATTCTGATTCTATGTTACTGGTTTCATGT 1182
Query 1218 -----T-ATGTTCCTTATGGTTCATAATTAGACCAAAACTTAATGAAAGTCAGTTTAT 1269
| |||||||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 1183 GCAAGTTATGTTCCTTATGGTTCATAACTAGACCAAAACTTAATAAAAGTCGGTTTAT 1240
> AT3G28490.1 | Symbols: | Oxoglutarate/iron-dependent oxygenase
| chr3:10679049-10680654 REVERSE LENGTH=968
Length=968
Score = 832 bits (450), Expect = 0.0
Identities = 712/836 (85%), Gaps = 27/836 (3%)
Strand=Plus/Plus
Query 243 TTCTTCTTTTGGGTTTGATCCAACTCGTGTTACTCAACTCTCTTGGACTCCTAGAGCTTT 302
|||| |||| | | ||||||||||| | | ||||||||||||||||||||||| || ||
Sbjct 67 TTCTCCTTTAGTG-TTGATCCAACTAGAATCACTCAACTCTCTTGGACTCCTAGGGCATT 125
Query 303 TTTGTATAAAGGGTTTCTTTCTGATGAGGAATGTGATCACTTT-ATCAAATTGGCGAAAG 361
||| || ||||| ||||| || ||||||||||||||||| ||| || || ||||| ||||
Sbjct 126 TTTATACAAAGGATTTCTCTCAGATGAGGAATGTGATCA-TTTGATTAAGTTGGCAAAAG 184
Query 362 GAAAGCTTGAGAAGTCAA---TGGTGGCTGATAATGATTCTGGTGAGAGTGTAGAGAGTG 418
|||||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||||
Sbjct 185 GAAAGCTTGAGAAGTCAATGGTGGTGGCTGATGTTGATTCAGGTGAGAGTGAAGACAGTG 244
Query 419 AAGTACGCACAAGTTCTGGAATGTTTTT-ATCCAAAAGACAGGATGATATTGTAGCAAAT 477
|||||||||||||||||||||||||| | | ||||||||||||||||||| ||||| |||
Sbjct 245 AAGTACGCACAAGTTCTGGAATGTTTCTGA-CCAAAAGACAGGATGATATAGTAGCTAAT 303
Query 478 GTCGAGGCAAAACTTGCTGCGTGGACCTTTATTCCCGAAGAAAATGGGGAATCCATGCAA 537
|||||||| ||||||||||| ||||||||| |||| || |||||||||||| || | |||
Sbjct 304 GTCGAGGCTAAACTTGCTGCATGGACCTTTCTTCCTGAGGAAAATGGGGAAGCCTTACAA 363
Query 538 ATATTGCATTATGAGAATGGTCAAAAGTATGAACCGCATTTTGACTACTTTCACGACCAG 597
||| |||| ||||||||||||||||| ||||| |||||||| ||||| ||| ||||| ||
Sbjct 364 ATACTGCACTATGAGAATGGTCAAAAATATGATCCGCATTTCGACTATTTTTACGACAAG 423
Query 598 GCCAA--TCTAGAGCTCGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAATG 655
|| ||||||||| |||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 424 A--AAGCTCTAGAGCTAGGTGGTCATCGGATCGCCACCGTACTAATGTACTTGTCCAATG 481
Query 656 TTGA-AAAGGGCGGAGAAACAGTGTTTCCCATGTGGAAGGGTAAAACAACTCAGTTGAAA 714
| | |||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 482 TC-ACAAAGGGTGGAGAAACAGTGTTTCCCAACTGGAAGGGTAAAACACCTCAGCTGAAA 540
Query 715 GACGATAGCTGGACCGAA-TGTGCAAAACAAGGCTATGCAGTGAAACCAAGGAAAGGGGA 773
|||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 541 GACGATAGCTGGTC-GAAATGTGCAAAACAAGGCTATGCAGTGAAACCGAGGAAAGGTGA 599
Query 774 CGCATTGTTGTTCTTCAATCTACACCCAAATGCAACCACAGATTCAAATAGCTTACATGG 833
|||||| |||||||||||||| || | ||||| ||| || || ||||||||||||||||
Sbjct 600 CGCATTATTGTTCTTCAATCTTCATCTAAATGGAACAACGGACCCAAATAGCTTACATGG 659
Query 834 AAGCTGTCCGGTGGTTGAGGGAGAGAAATGGTCAGCAACCAGATGGATTCACGTTAGGTC 893
||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 660 AAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACTAGATGGATTCATGTTAGGTC 719
Query 894 ATTCGACAGAGCGTTTAGTAAGCAATCTGGATGTGTGGACGAGAATGTGAGCTGCGAAAA 953
||||| | || || || | | || ||||||||||| ||| ||||||| || |
Sbjct 720 ATTCGGTA-AGA----AGAAA-CT-TGTG--TGTGTGGACGATCATGAGAGCTGCCAAGA 770
Query 954 ATGGGCAAAGGCAGGGGAATGCCAGAAGAATCCAACATACATGGTTGGTTCAGACAAAGA 1013
||||||| | |||||||||||| |||||||||||| |||||||| ||||| || ||
Sbjct 771 ATGGGCAGATGCAGGGGAATGCGAGAAGAATCCAATGTACATGGTGGGTTCGGA-AACTT 829
Query 1014 CCAT-GGATATTGCAGAAAGAGTTGCAACGCTTGCTCATCTTAAGAACAACGACAA 1068
|| | |||| ||| |||||||| ||||| ||||| | |||||||||||||| ||||
Sbjct 830 CCCTTGGATTTTGTAGAAAGAGCTGCAAAGCTTGTTGATCTTAAGAACAACAACAA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5