BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484625
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28500.1 | Symbols: | 60S acidic ribosomal protein family |... 800 0.0
> AT3G28500.1 | Symbols: | 60S acidic ribosomal protein family
| chr3:10682097-10682731 FORWARD LENGTH=635
Length=635
Score = 800 bits (433), Expect = 0.0
Identities = 513/550 (93%), Gaps = 11/550 (2%)
Strand=Plus/Plus
Query 1 AAAA-CCCTAAAACGATGAAGGTGATCT-CTGCATTTCTTCTCGCTAAACTCGGAGGAAA 58
|||| ||||||||||||||||||||| | |||||||||| ||||| |||||||| |||||
Sbjct 93 AAAACCCCTAAAACGATGAAGGTGAT-TGCTGCATTTCTCCTCGCGAAACTCGGTGGAAA 151
Query 59 CGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 CGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGA 211
Query 119 CGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTAT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTAT 271
Query 179 TGCTGCTGGGAGAGAAAAGATGGCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGT 238
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 272 TGCTGCTGGGAGAGAAAAGATGTCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGT 331
Query 239 GGCCGGAGGAGGCGGTGGTGGTGGTGGTGCTTCGGCGGCTGAGCCGGTGGCTGAGTCTAA 298
||| ||||| || ||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 332 GGCTGGAGGTGG---TGGTGGTGGTGCTGCTTCGGCGGCTGAGCCGGTTGCTGAATCTAA 388
Query 299 GAAGAAGGTTGAAGAAGTTAAAGATGAATCTTCTGATGATGCAGGCATGATGGGTCTCTT 358
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 389 GAAGAAGGTTGAAGAAGTGAAGGATGAATCTTCTGACGATGCAGGCATGATGGGTCTCTT 448
Query 359 TGATTGATGATTTGGTTTGAAGTTTCGTTTAAATGTTAAGACTTTATGTTTCTGATGTTG 418
|||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 449 TGATTGATCATTTGGTTAGAAGTTTCGTTTAAAGGTCAAGACTTTATGTTTCTGATGTTG 508
Query 419 GTTTTGT-GATGGATCTTTGGGTAATGTTGAGACTTGTGTTTCTGATCTTGGTTTAATTA 477
||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||| |
Sbjct 509 GTTTTATTGATGGATCTTTGTTTAATGTTGAGACTTGTGTTTCTGATGTTGGTTTAATGA 568
Query 478 TCTTTGGTGGTTATGATTCTCTATGGtttttttGTTACTTGTGATTTGAGAATTGTGGAT 537
||||||||||| |||| ||||||| || || ||||||||||||||||||||||||||
Sbjct 569 TCTTTGGTGGTGATGA--CTCTATG-TTGGGTT-TTACTTGTGATTTGAGAATTGTGGAT 624
Query 538 GATGATGATG 547
||||||||||
Sbjct 625 GATGATGATG 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26222224734
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5