BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484630
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10588.1 | Symbols: | Gibberellin-regulated family protein ... 508 2e-143
AT2G39540.1 | Symbols: | Gibberellin-regulated family protein ... 359 2e-98
> AT1G10588.1 | Symbols: | Gibberellin-regulated family protein
| chr1:3501202-3501904 FORWARD LENGTH=596
Length=596
Score = 508 bits (275), Expect = 2e-143
Identities = 335/362 (93%), Gaps = 11/362 (3%)
Strand=Plus/Plus
Query 88 ttttACGTAAA-TAACTCTATCA-AAAAGGAGAAAGCTTTAAAATTTAACCAGAAATGAA 145
|||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 22 TTTTAC-TAAACTAACTCTATCATAAAAGGAGAAAGCTTT-AAATTTAACCAGAAATGAA 79
Query 146 GATGCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTACTCACATCATCATTTTTTGT 205
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 80 GATGCCCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTATGT 139
Query 206 ACTTTCAAGCGCTGATTCAT---CATGCGGTGGAAAGTGCGA-TGTGAGATGCTCAAAGG 261
|||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 140 ACTTTCAAGCGCTGATTCATCAGCATGCGGTGGAAAGTGC-AGTGTGAGATGCTCAAAGG 198
Query 262 CTGATCG-ACAACATGAGGAGTGCCTTAAGGACTGCAATATATGTTGCCAGAAGTGTAAT 320
| ||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 199 CAGATCGAAC-ACATGAGGAGTGCCTTGAGGACTGCGATATATGTTGCCAGAAGTGTAAT 257
Query 321 TGTGTTCCTTCGGGCACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATTTGAAA 380
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 258 TGTGTTCCTTCGGGGACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAA 317
Query 381 AACTCTAAGGGCGAATCCAAGTGTCCTTGAACACGCTTTGAAGATCCTCATCGCATAGAT 440
||||| || |||| ||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 318 AACTCCAAAGGCGGATCCAAGTGTCCTTGAACATTCTTTGAAGATCCTCATCACATACAT 377
Query 441 AT 442
||
Sbjct 378 AT 379
> AT2G39540.1 | Symbols: | Gibberellin-regulated family protein
| chr2:16500866-16501241 FORWARD LENGTH=264
Length=264
Score = 359 bits (194), Expect = 2e-98
Identities = 240/262 (92%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 149 GCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTACTCACATCATCATTTTTTGTACT 208
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 6 GCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTCTGTACT 65
Query 209 TTCAAGCGCTGATTCATCATGCGGTGGAAAGTGCGATGTGAGATGCTCAAAGGCTGATCG 268
|||||| |||||||| |||||||||||||||||| ||||||||||||||||||| | |
Sbjct 66 TTCAAGTGCTGATTCGTCATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGC--A-GG 122
Query 269 ACAACATGAGGAGTGCCTTAAGGACTGCAATATATGTTGCCAGAAGTGTAATTGTGTTCC 328
||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 123 ACAACATGAAGAATGCCTCAAGTACTGCAATATATGTTGCCAGAAGTGTAATTGTGTTCC 182
Query 329 TTCGGGCACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATTTGAAAAACTCTAA 388
|||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 183 TTCGGGAACTTTTGGACACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACTCCAA 242
Query 389 GGGCGAATCCAAGTGTCCTTGA 410
|| | ||||||||||||||||
Sbjct 243 AGGTGGATCCAAGTGTCCTTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5