BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484637
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28630.1 | Symbols: | Protein of unknown function (DUF569) ... 1696 0.0
> AT3G28630.1 | Symbols: | Protein of unknown function (DUF569)
| chr3:10728951-10730849 FORWARD LENGTH=1407
Length=1407
Score = 1696 bits (918), Expect = 0.0
Identities = 1107/1197 (92%), Gaps = 18/1197 (2%)
Strand=Plus/Plus
Query 1 AATAAGAAAACAAAGAAACCTCTTTTTTCTCTAATCCAAATCAAAGAAACTAAAAAAGGG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 25 AATAAGAAAACAAAGAAACCTCTTTTTTCTCTAATCCAAATGAAAGAAACTAAAAAAGGG 84
Query 61 TTCCAAAGTACCTGAAATTTG-TTCGCATGAATGATCTTCAAT-CACATTGTTGAATGTA 118
||| ||||||||||||| ||| ||| ||||||||||||||||| || || ||| | |||
Sbjct 85 TTCTAAAGTACCTGAAA-TTGTTTCACATGAATGATCTTCAATCCA-ATCCTTGGAGGTA 142
Query 119 AAATCGCGGCCCTGGCCATCGACAGATCCCTGTTTCAGATTTTTGT-GTTTTGATACAAC 177
||||||| || |||||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct 143 AAATCGCAGCTGTGGCCATCAAAAGATCCCTGTTTCAGATTTTTGTAATTTT-ATACAAA 201
Query 178 AGAACAATAATGGAGATTTTCAAAAAGGCTGAAACCGTGCGTTTACGTAGCTACCACGAC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 AGAACAATAATGGAGATTTTCAAAAAGGCTGAAACCGTGCGTTTACGTAGCTACCACGAC 261
Query 238 AAGTACCTTTTAGCAGAGGAGGACGAAGATTCCGTGAGCCAGGACAGAGATGGGCGGTCT 297
||||| ||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 262 AAGTATCTTCTAGCAGAGGAGGATGAAGAATCCGTGAGCCAGGACAGAGACGGGCGGTCT 321
Query 298 ATGAACGCAAGATGGACGGTGGAGATTGTAGAAGTGACAAACGTGATCCGTCTTAAGAGC 357
|||||||||||||||||||||||| |||||||| | | | ||||| ||||| ||||||
Sbjct 322 ATGAACGCAAGATGGACGGTGGAGGTTGTAGAAAAGGCGGATGTGATTCGTCTCAAGAGC 381
Query 358 TGCTTTGGCAAGTACCTAACCGCTTCAAACATCCCAATGTTCCTTGGCATGACCGGCAAG 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 382 TGCTTTGGCAAGTACCTAACCGCTTCAAACATCCCAATGTTCCTTGGGATGACTGGCAAG 441
Query 418 AAGGTAACGCAAACGCTGCCACG-ACGGCTAGATTCATCAACTGAATGGGAACCTGTTAG 476
| ||| || |||||||||||||| | ||||||| |||||||||||||||||||| |||||
Sbjct 442 AGGGTGACACAAACGCTGCCACGGA-GGCTAGACTCATCAACTGAATGGGAACCCGTTAG 500
Query 477 AGAAGGCGTTCAGGTTAGGCTTAAGACAAGGTATGGACAGTATCTCCGAGCTAATGGGGG 536
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGAAGGTGTTCAGGTTAGGCTCAAGACAAGGTATGGACAGTATCTCCGAGCTAATGGGGG 560
Query 537 TTTACCGCCATGGAGGAACTCGATTACACATGATATACCTCATAGGTCAACCACACAGGA 596
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 561 TTTACCGCCATGGAGGAATTCGATTACCCATGATATACCTCATAGGTCAACCACACAGGA 620
Query 597 CTGGGTTTTATGGGATGTTGATATTTTGGAAAGCAGAAAGAAGAAAGCACCCCCAGTGGC 656
||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 621 TTGGGTTTTATGGGATATTGACATTCTGGAAAGCAGAAAGAAGAAAGCACCCCCAGTGGC 680
Query 657 TGAACCGGCTTATACGCCTCTCCCGCCTCCCCCACCACCACCAGAGCTTCTGCAGGAAAG 716
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||
Sbjct 681 TGAACCGGCTTATACGCCTCTCCCCCCTCCTCCACCACCACCAGAGCTTCTGCAAGTAAG 740
Query 717 AAAAGATGATCATCAAGAGCCCCATTCACCCAAAGGATTCTCTCTCAGGTCCCCAAGGTT 776
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAAGATGATCATCAAGAGCCCAATTCACCCAAAGGATTCTCTCTCAGGTCCCCAAGGTT 800
Query 777 TTCCAAATTCGAGTCTGATGACAGTGTCAGCTCACCGGTCAAGGCAGATGGCAGGCTAAT 836
|||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 801 TTCCAAATCCGAGTCTGATGACACTGTCAGCTCACCAGTCAAGGCAGATGGCAGACTAAT 860
Query 837 TTATTATAGGATTGGGGACGAAGATGGGAATGTAGATGAAACAACAAAGGAAGAGCTTTT 896
||||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 861 TTATTATCGGATTGGGGACGAAGATGGGAACGTGGATGAAACAGCAAAGGAAGAGCTTTT 920
Query 897 CTGCTTCAAGGGAATGGGACTAGAAGAGCTCAAAGAGAAGCTCAAAGAAGAGACAGGTCT 956
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 921 CTGCTTCAAGGGAATGGGACTAGAAGAGCTGAAAGAGAAGCTTATAGAAGAGACAGGTCT 980
Query 957 AAGTGACATATCAATCTGTTCCAAAAACCCTTTAAACGGGAAATTATATCCCCTTCGGTT 1016
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 981 GAGTGATATATCAATCTGTTCCAAAAACCCTTTAAACGGAAAATTATATCCCCTTCGGTT 1040
Query 1017 GCATCTCCCTCCCAACAACACAAAAATGCACGTTGTCTTGATCCCCTCGCCTTCAAAAGG 1076
||||| ||||||||||||||||| ||||| || || |||||||| ||||||||||||||
Sbjct 1041 ACATCTTCCTCCCAACAACACAAAGATGCATGTCGTATTGATCCCTTCGCCTTCAAAAGG 1100
Query 1077 GGATGCTGCAAGCACTTCTTGAAGACTTGAAGTATGGTTCAAAATTACAGAGACTGTGTT 1136
|||||||||||||||||||||||| | | | |||||||||||||||||||| ||||
Sbjct 1101 GGATGCTGCAAGCACTTCTTGAAG--T--A--T--GGTTCAAAATTACAGAGACTCTGTT 1152
Query 1137 -ATCCAAGACCAAAAACTTATAGTTTCTGTTATTGTGTAATTTGGTAATACGTTGTA 1192
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1153 TATCCAAGACCACAAACTTATAGTTTCTGT-ATTGTGTAATTTGGTAACACGTTGTA 1208
Score = 235 bits (127), Expect = 8e-61
Identities = 144/152 (95%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 1192 ATATGTGAAATGCTACCTAAGCAACTAAAACCCAATACTAAGCCAAACATGCAAGAAGAT 1251
|||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 1257 ATATGTGAAACGCTACCTACGCAACTAAAACCCAATACTAA-CCAAACATTAAAGAAGAT 1315
Query 1252 ATTGTGTCGGGATTTCGTAAGACTTCCCATCAAGTTCTTGTCAATAAGCTTCTTTCAT-C 1310
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1316 ATTGTGTAGGGATTTCGTAAGACTTCCCATCAAGTTCTTGTCAATAAGCTTCTTTCATTC 1375
Query 1311 TTAGTGAGATGCTAATGAGAGCAAATCATATG 1342
|||||||||||||||||||||||||| |||||
Sbjct 1376 TTAGTGAGATGCTAATGAGAGCAAATTATATG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5