BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484645
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28710.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | ... 2065 0.0
AT3G28715.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | ... 1766 0.0
> AT3G28710.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D
| chr3:10772903-10775727 REVERSE LENGTH=1430
Length=1430
Score = 2065 bits (1118), Expect = 0.0
Identities = 1327/1423 (93%), Gaps = 34/1423 (2%)
Strand=Plus/Plus
Query 1 AAACAAATCCAATCAATTCGAAGCTATCTTCTTCTTCGCGTCGATCTCTGTATCGATTTC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 14 AAACAAATCCAATCAATTCGAAGCTATCTTCTTCTTCGCGTTGATCTCTGTATCGATTTC 73
Query 61 TTCTTCAGATCTCTC-ACGACAATCTTTGAGATCTGAATAATCCTACGATCAGGAGGA-A 118
||||||||||||| | |||||||| ||||||||||||| ||| |||| | |||| || |
Sbjct 74 TTCTTCAGATCTC-CGGCGACAATCATTGAGATCTGAAT-ATCTTACGTTAAGGA-GAGA 130
Query 119 AATATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATC 178
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 131 AAGATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATATTTGGAGGCGATC 190
Query 179 GTCAGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGT 238
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 191 GTTAGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAATAATCTATGTCAGTGT 250
Query 239 GAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAA 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 251 GAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGCTCTTATCTCCAA 310
Query 299 AACGAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTT 358
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 311 AACGAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACTCTTAAGCTTGTT 370
Query 359 GATGACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTAC 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 371 GATGACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTAC 430
Query 419 ATCAGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAG 478
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 431 ATCAGATATGGCCACATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCATGAG 490
Query 479 AGAGATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCT 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGAGATGTTCAAGAGTTGATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCT 550
Query 539 ACACTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCT 598
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 551 ACACTAGCAGTTGCTCAGAACATGCGGGAACTCTACCGGTTGGTGCTTGTGGATACTCCT 610
Query 599 CTGGCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAG 658
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 611 TTGGCTCCATACTTTTCTGAATGCTTAACGTCAGAGGATCTCGATGACATGAACATAGAG 670
Query 659 ATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAA 730
Query 719 CTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGA 778
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 731 CTTGGTGGCGCAACAGCGGAGATTATGTCTGACCTTTTGGCCTTTGAGGCCGATAGAAGA 790
Query 779 GCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 791 GCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGAAAGAAA 850
Query 839 TTGTACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAG 898
||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 851 CTGTACTCTAACTTTGGTCTACTCTATCCATATGGTCACGAAGAGCTTGCTATCTGCGAG 910
Query 899 GATATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCC 958
|||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 911 GATATAGACCAGGTTCGTGGTGTTATGGAGAAATATCCTCCGTATCAAGCTATATTCTCG 970
Query 959 AAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGA 1018
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 971 AAGATGTCTTATGGAGAGAGCCAGATGCTCGACAAAGCATTTTATGAAGAAGAAGTCAGA 1030
Query 1019 AGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGG 1078
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1031 AGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGG 1090
Query 1079 TTGAGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAG 1138
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1091 TTAAGAGAGCAGGAGATCAGGAACCTTATGTGGATATCTGAATGTGTTGCACAGAACCAG 1150
Query 1139 AAGTCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAA-GAAGTCAAAAA 1197
|||||||| |||||||||||||||||||||||||||||| | |||| || ||||||||
Sbjct 1151 AAGTCCAGGATCCACGACAGTGTCGTCTACATGTTCTGATTCTGGTGGTGA-GTCAAAAA 1209
Query 1198 CACATAAACAAATGTGAAATCT-GAGTCTGGTT--CT-CAT-G-T----A----CAATCG 1243
|||||||||||||||||||||| |||||||||| || ||| | | | ||||||
Sbjct 1210 CACATAAACAAATGTGAAATCTTGAGTCTGGTTTTCTTCATCGCTCCTCATGTACAATCG 1269
Query 1244 TTGGTTTT-ACATTCCCTGTTTCTGTCGCTCTGCATTTTACCAG--TGCGTGTATTGAGT 1300
|||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1270 TTGGTTTTTACATTCCCTGTTTCTGTCGCTCTGTGTTT-ACCAGAGTGCGTGTATTGAGT 1328
Query 1301 AT-TCCCCAATAAGAATCTCTCC-ATTTGTTTGTTTGTTGTTGGCCATAT--TCTTG-AT 1355
|| |||| ||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 1329 ATCTCCC-AATAAGAATCTCTTTTATTTGTTTGTTTGTTGTTGGCCATACACTCTTGTAA 1387
Query 1356 TGATACTCTTTTTATATATGATGCATACGAATTACTTTCGCGG 1398
||| | ||| || |||||||||||||||||||||||||||
Sbjct 1388 -GAT-CAAATTT-ATTTATGATGCATACGAATTACTTTCGCGG 1427
> AT3G28715.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D
| chr3:10777849-10780633 FORWARD LENGTH=1515
Length=1515
Score = 1766 bits (956), Expect = 0.0
Identities = 1073/1130 (95%), Gaps = 6/1130 (1%)
Strand=Plus/Plus
Query 65 TCAGATCTCTC-ACGACAATCTTTGAGATCTG-AATAATCCTACGATCAGGAGGA-AAAT 121
||||||||| | ||| ||||||||||||||| ||| || ||| ||||||| || |||
Sbjct 120 TCAGATCTC-CGGCGATAATCTTTGAGATCTGAAAT-TTCTTACAATCAGGA-GAGAAAG 176
Query 122 ATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATCGTC 181
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 177 ATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCGATCGTC 236
Query 182 AGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGTGAG 241
||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 237 AGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAGTGTGAG 296
Query 242 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAAAAC 301
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTCCAAAAC 356
Query 302 GAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 361
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 357 GAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 416
Query 362 GACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 421
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 GACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 476
Query 422 AGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAGAGA 481
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 477 AGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCACGAGAGA 536
Query 482 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 596
Query 542 CTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 601
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 656
Query 602 GCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 661
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 716
Query 662 ATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTT 721
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 ATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAGAAACTT 776
Query 722 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGAGCA 781
||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 777 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGGAGAGCA 836
Query 782 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAATTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAACTG 896
Query 842 TACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAGGAT 901
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||
Sbjct 897 TACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGTGAAGAC 956
Query 902 ATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCCAAG 961
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 957 ATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTCTCCAAG 1016
Query 962 ATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGAAGG 1021
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1017 ATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTCAGAAGG 1076
Query 1022 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGGTTG 1081
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1077 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGGTTG 1136
Query 1082 AGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1141
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1196
Query 1142 TCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAAGAAGT 1191
||||| |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1197 TCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5