BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484650 Length=1289 Score E Sequences producing significant alignments: (Bits) Value AT3G28750.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 1594 0.0 AT5G39880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 93.5 5e-18 > AT3G28750.1 | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39880.1); Has 37 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr3:10791591-10792844 REVERSE LENGTH=1254 Length=1254 Score = 1594 bits (863), Expect = 0.0 Identities = 1167/1303 (90%), Gaps = 63/1303 (5%) Strand=Plus/Plus Query 1 ACTTCCTTCATTTTCCTTTCTAGTTTTATATTTCAAGtt-ttttttttttAACCTTGCCA 59 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 ACTTCCTTCATTTTCCTTTCTAGTTTTATATTTCAAGTTCTTTTTTTTTTAACCTTGCCA 60 Query 60 TCAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCTTTAGCCTTAGTTCTAGCCATCG 119 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 TCAATACAACCATGGCAAGGATTTCTCTGTTGTTCTCTTTAGCCTTAGTTCTAGCCATCG 120 Query 120 GGTCTGTCTTGGCTCACCCACCTACCGACAAGAAAATACAAAAGACCTTGTGTCCATCTA 179 |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 121 GGTCCGTCTTGGCTCACCCACCTACCCACAAGAAATTACAAAAGACCTTGTGTCCATCTA 180 Query 180 CTTTGGCCAAAGTCCAAGCCTTCCCTTACAC-TGAAATCTCTAACTTCGTCCAGAAGAAG 238 ||||| ||||||| ||||| ||||||||| | |||| |||||| ||||||| |||||||| Sbjct 181 CTTTGTCCAAAGTTCAAGCTTTCCCTTAC-CTTGAAGTCTCTAGCTTCGTCGAGAAGAAG 239 Query 239 GTTCAATTCGCACCAAAAACCATTGCATTCAAGACTTTGTTCGCCGTCTGCAAGGGCTAC 298 ||||| |||||||||||||||||||| |||||| |||||||| || |||||||| ||||| Sbjct 240 GTTCAGTTCGCACCAAAAACCATTGCGTTCAAGTCTTTGTTCTCCATCTGCAAGAGCTAC 299 Query 299 ACCGAATTTCTTGGGGCCTTTAAGTTTTCTGGCTCCAAAGATGTGTTTCACGTCGTTCAT 358 | ||| |||||||||| | |||||||||||| ||||| |||||||||||||||||||||| Sbjct 300 ATCGACTTTCTTGGGGGCGTTAAGTTTTCTGCCTCCAGAGATGTGTTTCACGTCGTTCAT 359 Query 359 GTCAAATTCGCTTTGATGACCAGGGCGATGGTTGCTGCACAAGCACATATTGGTGTTGAA 418 ||||||||| |||||||||||| |||||||||| |||||||||||| ||||| |||||| Sbjct 360 GTCAAATTCACTTTGATGACCAAGGCGATGGTTATTGCACAAGCACACATTGGAGTTGAA 419 Query 419 GGAGACCTTGCTGTTAAGTTGGGAAAAAGCTACACCGTGATGGCTGAAAGGTTTGTTAAG 478 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 420 GGAGACCTCGCTGTTAAGTTGGGCAAAAGCTACACCGTGATGGCTGAAAGGTTTGTCAAC 479 Query 479 CTTGTGGAGAAGATGGCTGCGGTCTCGGCAAAGTATAAGTTCAATGCTAATGCTGAGATA 538 ||| |||||| |||| || |||||||||| |||||||||||| ||||||||||| ||||| Sbjct 480 CTTTTGGAGATGATGTCTACGGTCTCGGCCAAGTATAAGTTCGATGCTAATGCTAAGATA 539 Query 539 AGCG-TGAGTGAGAGGGCTGAGATTGAAAAATGTGTGAGT-AAGTTGAAGAGTGCCATTA 596 |||| | |||||||| |||||||||||||||||||||| | ||||||||||||||||||| Sbjct 540 AGCGCT-AGTGAGAGTGCTGAGATTGAAAAATGTGTGA-TGAAGTTGAAGAGTGCCATTA 597 Query 597 GGTCTTACGTGAAGGTGATCTCTCAGTGCAGCACGAAATTCTCTGCTGGGAAGAATATTG 656 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 598 GGTCTTACGTGAAGGTGATCTCTCAGTGCAGCACGAAATTCTCTGCTGGAAAGAGTATTG 657 Query 657 GTTTTCCCACTTACCCCGGCGGTTTCCTCGGAGGTATAGCTAAACAAGGTCTCGGATATG 716 |||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 658 GTTTCCCCACTTACCCCGTTGGTTTCATTGGAGGTATAGCTAAACAAGGTCTCGGATATG 717 Query 717 CCGATAAATTGGTTGGAGCTCACGGCCAAGTTGGAGCCGGAGTT-GAAATCGGAGCTAAA 775 | | |||||| ||||||||||| |||||||||||||||||| || ||||||||||||||| Sbjct 718 CGGGTAAATTTGTTGGAGCTCATGGCCAAGTTGGAGCCGGA-TTCGAAATCGGAGCTAAA 776 Query 776 GCTAAGGTTGGAGCTCATGCCAAAGGCAAGGTTGGAGTTGAAAGATTCTTGAAGTACGGA 835 ||||||||||||| | | | | | | | | | | ||| ||||||| |||||||| Sbjct 777 GCTAAGGTTGGAG-T--T-C-A--G--A-G-T-G-A----AAA-ATTCTTGGAGTACGGA 818 Query 836 CCAATAGTTCAACCCAAAGGCAAGGTTGGAGTTCAAAGTGAAGCTAAAGTCGGAGGTCAG 895 |||||| | |||||||||| ||||||||||||||| |||||| |||||||||||||||| Sbjct 819 CCAATAACTAAACCCAAAGGTAAGGTTGGAGTTCAAGGTGAAGTTAAAGTCGGAGGTCAG 878 Query 896 TTCGATGCCGCGGGTAGGGCTAAGGTTGGAGCTCATGTCAAAGGCAAGGTTGGAGCTCAA 955 || |||||||||||| |||||||||| ||||||| | | ||| | | Sbjct 879 GTCCATGCCGCGGGTAAGGCTAAGGTTAGAGCTCA----A--G------TTG-A----A- 920 Query 956 GGTGAAGCTAAAGTCGGAGGTAATAAC-GG-AG-G-ATATTGGGAAGGATTCCA-GAAGT 1010 | |||||||||||||| | ||| || || | ||||| || ||| || | ||||| Sbjct 921 G------CTAAAGTCGGAGGTGA-AACCGGCAGTGGATATTATGATGGAATC-ATGAAGT 972 Query 1011 ACTTAGGAAAAGGTCAGTTCGATGCCGCGGGTAAGGCGCATGTCGGTGGAGGAAGCGGAT 1070 |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 973 ACTTTGGAAAAGGTCACTTCGATGCCGCGGGTAAGGCGCATGTCAGTGGAGGAAGCGGAT 1032 Query 1071 TCAGGCCATTGAGCAACCCTCACAAGAAGCACTTAGATTGAACAAAGGGCACAAGTTTAT 1130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 TCAGGCCATTGAGCAACCCTCACAAGAAGCACTTAGATTGAACAAAGGGCACAAGTTTAT 1092 Query 1131 ACAACAGATGAAGGAGTCATGAGTTCATCTCTTATTTTTATTTTTAATATTATATGAAGG 1190 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1093 ACAACAGATGAAGGAGCCATGAGTTCATCTCTTATTTTTATTTTTACTATTATATGAAGG 1152 Query 1191 AGGGAAACGCCATGCGATATTAATCTCTATTTGTAACCATTTTaaaaa-aaaTCGATATT 1249 |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 1153 AGGGAAACGCCATGCGATATTAATCTCTATTTGTAACCATTTTAAAAACAAA-CTATATT 1211 Query 1250 TGTAACTCAT--T-AATATAATATCGCATGTTTTCTTAATTAC 1289 |||||||||| | ||||||||||||||||||||||||||||| Sbjct 1212 TGTAACTCATCATTAATATAATATCGCATGTTTTCTTAATTAC 1254 > AT5G39880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28750.1); Has 25 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15970887-15972237 FORWARD LENGTH=1351 Length=1351 Score = 93.5 bits (50), Expect = 5e-18 Identities = 70/79 (89%), Gaps = 4/79 (5%) Strand=Plus/Plus Query 45 tttttAACCTTGCCAT---CAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCTTTAG 101 ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 51 TTTTT-GCCTTGCCATAAGCAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCATTAG 109 Query 102 CCTTAGTTCTAGCCATCGG 120 |||| ||| ||||| |||| Sbjct 110 CCTTTGTTTTAGCCCTCGG 128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63403288335 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5