BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484650
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28750.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 1594 0.0
AT5G39880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 93.5 5e-18
> AT3G28750.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 12 plant structures; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage, 4
anthesis, C globular stage, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G39880.1); Has
37 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0;
Other Eukaryotes - 9 (source: NCBI BLink). | chr3:10791591-10792844
REVERSE LENGTH=1254
Length=1254
Score = 1594 bits (863), Expect = 0.0
Identities = 1167/1303 (90%), Gaps = 63/1303 (5%)
Strand=Plus/Plus
Query 1 ACTTCCTTCATTTTCCTTTCTAGTTTTATATTTCAAGtt-ttttttttttAACCTTGCCA 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ACTTCCTTCATTTTCCTTTCTAGTTTTATATTTCAAGTTCTTTTTTTTTTAACCTTGCCA 60
Query 60 TCAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCTTTAGCCTTAGTTCTAGCCATCG 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAATACAACCATGGCAAGGATTTCTCTGTTGTTCTCTTTAGCCTTAGTTCTAGCCATCG 120
Query 120 GGTCTGTCTTGGCTCACCCACCTACCGACAAGAAAATACAAAAGACCTTGTGTCCATCTA 179
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 GGTCCGTCTTGGCTCACCCACCTACCCACAAGAAATTACAAAAGACCTTGTGTCCATCTA 180
Query 180 CTTTGGCCAAAGTCCAAGCCTTCCCTTACAC-TGAAATCTCTAACTTCGTCCAGAAGAAG 238
||||| ||||||| ||||| ||||||||| | |||| |||||| ||||||| ||||||||
Sbjct 181 CTTTGTCCAAAGTTCAAGCTTTCCCTTAC-CTTGAAGTCTCTAGCTTCGTCGAGAAGAAG 239
Query 239 GTTCAATTCGCACCAAAAACCATTGCATTCAAGACTTTGTTCGCCGTCTGCAAGGGCTAC 298
||||| |||||||||||||||||||| |||||| |||||||| || |||||||| |||||
Sbjct 240 GTTCAGTTCGCACCAAAAACCATTGCGTTCAAGTCTTTGTTCTCCATCTGCAAGAGCTAC 299
Query 299 ACCGAATTTCTTGGGGCCTTTAAGTTTTCTGGCTCCAAAGATGTGTTTCACGTCGTTCAT 358
| ||| |||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 300 ATCGACTTTCTTGGGGGCGTTAAGTTTTCTGCCTCCAGAGATGTGTTTCACGTCGTTCAT 359
Query 359 GTCAAATTCGCTTTGATGACCAGGGCGATGGTTGCTGCACAAGCACATATTGGTGTTGAA 418
||||||||| |||||||||||| |||||||||| |||||||||||| ||||| ||||||
Sbjct 360 GTCAAATTCACTTTGATGACCAAGGCGATGGTTATTGCACAAGCACACATTGGAGTTGAA 419
Query 419 GGAGACCTTGCTGTTAAGTTGGGAAAAAGCTACACCGTGATGGCTGAAAGGTTTGTTAAG 478
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 420 GGAGACCTCGCTGTTAAGTTGGGCAAAAGCTACACCGTGATGGCTGAAAGGTTTGTCAAC 479
Query 479 CTTGTGGAGAAGATGGCTGCGGTCTCGGCAAAGTATAAGTTCAATGCTAATGCTGAGATA 538
||| |||||| |||| || |||||||||| |||||||||||| ||||||||||| |||||
Sbjct 480 CTTTTGGAGATGATGTCTACGGTCTCGGCCAAGTATAAGTTCGATGCTAATGCTAAGATA 539
Query 539 AGCG-TGAGTGAGAGGGCTGAGATTGAAAAATGTGTGAGT-AAGTTGAAGAGTGCCATTA 596
|||| | |||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 540 AGCGCT-AGTGAGAGTGCTGAGATTGAAAAATGTGTGA-TGAAGTTGAAGAGTGCCATTA 597
Query 597 GGTCTTACGTGAAGGTGATCTCTCAGTGCAGCACGAAATTCTCTGCTGGGAAGAATATTG 656
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 598 GGTCTTACGTGAAGGTGATCTCTCAGTGCAGCACGAAATTCTCTGCTGGAAAGAGTATTG 657
Query 657 GTTTTCCCACTTACCCCGGCGGTTTCCTCGGAGGTATAGCTAAACAAGGTCTCGGATATG 716
|||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 658 GTTTCCCCACTTACCCCGTTGGTTTCATTGGAGGTATAGCTAAACAAGGTCTCGGATATG 717
Query 717 CCGATAAATTGGTTGGAGCTCACGGCCAAGTTGGAGCCGGAGTT-GAAATCGGAGCTAAA 775
| | |||||| ||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 718 CGGGTAAATTTGTTGGAGCTCATGGCCAAGTTGGAGCCGGA-TTCGAAATCGGAGCTAAA 776
Query 776 GCTAAGGTTGGAGCTCATGCCAAAGGCAAGGTTGGAGTTGAAAGATTCTTGAAGTACGGA 835
||||||||||||| | | | | | | | | | | ||| ||||||| ||||||||
Sbjct 777 GCTAAGGTTGGAG-T--T-C-A--G--A-G-T-G-A----AAA-ATTCTTGGAGTACGGA 818
Query 836 CCAATAGTTCAACCCAAAGGCAAGGTTGGAGTTCAAAGTGAAGCTAAAGTCGGAGGTCAG 895
|||||| | |||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 819 CCAATAACTAAACCCAAAGGTAAGGTTGGAGTTCAAGGTGAAGTTAAAGTCGGAGGTCAG 878
Query 896 TTCGATGCCGCGGGTAGGGCTAAGGTTGGAGCTCATGTCAAAGGCAAGGTTGGAGCTCAA 955
|| |||||||||||| |||||||||| ||||||| | | ||| | |
Sbjct 879 GTCCATGCCGCGGGTAAGGCTAAGGTTAGAGCTCA----A--G------TTG-A----A- 920
Query 956 GGTGAAGCTAAAGTCGGAGGTAATAAC-GG-AG-G-ATATTGGGAAGGATTCCA-GAAGT 1010
| |||||||||||||| | ||| || || | ||||| || ||| || | |||||
Sbjct 921 G------CTAAAGTCGGAGGTGA-AACCGGCAGTGGATATTATGATGGAATC-ATGAAGT 972
Query 1011 ACTTAGGAAAAGGTCAGTTCGATGCCGCGGGTAAGGCGCATGTCGGTGGAGGAAGCGGAT 1070
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 973 ACTTTGGAAAAGGTCACTTCGATGCCGCGGGTAAGGCGCATGTCAGTGGAGGAAGCGGAT 1032
Query 1071 TCAGGCCATTGAGCAACCCTCACAAGAAGCACTTAGATTGAACAAAGGGCACAAGTTTAT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TCAGGCCATTGAGCAACCCTCACAAGAAGCACTTAGATTGAACAAAGGGCACAAGTTTAT 1092
Query 1131 ACAACAGATGAAGGAGTCATGAGTTCATCTCTTATTTTTATTTTTAATATTATATGAAGG 1190
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1093 ACAACAGATGAAGGAGCCATGAGTTCATCTCTTATTTTTATTTTTACTATTATATGAAGG 1152
Query 1191 AGGGAAACGCCATGCGATATTAATCTCTATTTGTAACCATTTTaaaaa-aaaTCGATATT 1249
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1153 AGGGAAACGCCATGCGATATTAATCTCTATTTGTAACCATTTTAAAAACAAA-CTATATT 1211
Query 1250 TGTAACTCAT--T-AATATAATATCGCATGTTTTCTTAATTAC 1289
|||||||||| | |||||||||||||||||||||||||||||
Sbjct 1212 TGTAACTCATCATTAATATAATATCGCATGTTTTCTTAATTAC 1254
> AT5G39880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G28750.1); Has 25
Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria
- 2; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr5:15970887-15972237
FORWARD LENGTH=1351
Length=1351
Score = 93.5 bits (50), Expect = 5e-18
Identities = 70/79 (89%), Gaps = 4/79 (5%)
Strand=Plus/Plus
Query 45 tttttAACCTTGCCAT---CAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCTTTAG 101
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 51 TTTTT-GCCTTGCCATAAGCAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCATTAG 109
Query 102 CCTTAGTTCTAGCCATCGG 120
|||| ||| ||||| ||||
Sbjct 110 CCTTTGTTTTAGCCCTCGG 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5