BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484653
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28830.1 | Symbols: | Protein of unknown function (DUF1216)... 1362 0.0
AT3G28790.1 | Symbols: | Protein of unknown function (DUF1216)... 291 2e-77
> AT3G28830.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10831168-10833284 FORWARD LENGTH=1949
Length=1949
Score = 1362 bits (737), Expect = 0.0
Identities = 894/965 (93%), Gaps = 29/965 (3%)
Strand=Plus/Plus
Query 940 AAGAAAGTGCGAGTGCTCAAGGAGGCGCAAGTTCTCAAGGAAGCGCTAGTGCTCAAGGAA 999
||| |||||| |||||||||||| |||||||| |||||||||| || ||||||||| |||
Sbjct 1000 AAGGAAGTGCAAGTGCTCAAGGAAGCGCAAGTGCTCAAGGAAGTGCAAGTGCTCAAAGAA 1059
Query 1000 TTGTAAA-TGGGGCAA-GAGCTTTCTCCAAGAACAAAGAAACAAAGACATCGAGCCAAAG 1057
| ||| |||||||| | ||| | ||||||| || ||||||||||||||||||||||||
Sbjct 1060 GAG-AAAGTGGGGCAATG-GCTATGTCCAAGAGCAGAGAAACAAAGACATCGAGCCAAAG 1117
Query 1058 ACAATCAAAATCATCGAGCGAAAGTTCATCTAGTAGCACAACCACCACAACAGTGAAACA 1117
|||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1118 ACAATCCAAATCATCGAGTGAAAGTTCATCTTCTAGCACAACCACCACAACAGTGAAACA 1177
Query 1118 AGTCGAGAGTGAGACTTCCAAAGAAGTAATGTCATTCATAACT-CAACTCGAGAAGAAGT 1176
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1178 AGTCGAGAGTGAGACTTCCAAAGAAGTAATGTCATTCATAA-TGCAACTCGAGAAGAAGT 1236
Query 1177 ATGCAGCAAAGTCGGAACTCAAGGTCTTCTTCGAGTCTCTGAAGTCTTCCATGCAAGCTT 1236
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1237 ATGCAGCAAAGGCGGAACTCAAGGTCTTCTTCGAGTCTCTAAAGTCTTCCATGCAAGCTT 1296
Query 1237 CCGCAAGCGTTGGTTCCAAAACCGCGAAAGACTATGTTTCTGCCTCAAAAGCAGCCACTG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CCGCAAGCGTTGGTTCCAAAACCGCGAAAGACTATGTTTCTGCCTCAAAAGCAGCCACTG 1356
Query 1297 GTAAACTCTCTGAAGCCATGGCTACAGTTAGCTCAAAAAATGTCAAATCAGCAAAGATGA 1356
|||||||||| |||||||||||| |||| || || |||||||||||||||||||||||||
Sbjct 1357 GTAAACTCTCCGAAGCCATGGCTTCAGTGAGTTCCAAAAATGTCAAATCAGCAAAGATGA 1416
Query 1357 AGAGCAACTTGGACACCAGCAAAGATGAATTGATGAAGTGTGTCAAACAAATTCAAGATA 1416
|||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct 1417 AGAGCAACTTGGACACTAGCAAAGATGAAATGCTGAAGTGTGTCAAACAAATTCAAGATA 1476
Query 1417 TCAACAGTAAACTGGTGAGTGGCAAGACCGTGTCATCAACACAACAGTCAGAGCTCAAGC 1476
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TCAACGGTAAAATGGTGAGTGGCAAGACCGTGTCATCAACACAACAGTCAGAGCTCAAGC 1536
Query 1477 AGACAATCACCAAGTGGGAAAAAGTCACCACCCAATTTGTTGAGACCGCTGCTTCTTCGA 1536
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1537 AGACAATCACCAAGTGGGAAAAGGTCACCACCCAATTTGTTGAGACCGCTGCTTCTTCAA 1596
Query 1537 GTTCATCGTCATCCTCATCCTCATCCTCATC-T--TCT---GCTGCTTCTCAGCAGCAGG 1590
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1597 GTTCATCGTCATCCTCATCCTCATCCTCATCCTCATCTTCTGCTGCTTCTCAGCAGCAGG 1656
Query 1591 GCAATGCAGGAATGGTCAAGACTAATTGAGTTCAAAGGCGAAGTTGCTTTATCGC-CAAA 1649
||||||||| |||||||||||||||||||||| ||||| |||||| |||||| || ||||
Sbjct 1657 GCAATGCAGCAATGGTCAAGACTAATTGAGTTTAAAGGTGAAGTTACTTTATTGCGCAAA 1716
Query 1650 -GATCACCAAGAAAGACAAAACCAGTAATGCCAAAATATTATAATAAGTAGCTAATTAAC 1708
||||||||||||||||| |||||||||||||||| ||||||||||||||| | | |||
Sbjct 1717 AGATCACCAAGAAAGACACAACCAGTAATGCCAAA-TATTATAATAAGTAG-T--T-AAC 1771
Query 1709 TATTAGATCATTTATTTTTCATGTAAATAAAACTAAGATCGGTTATAGGTAAGCAAGCAA 1768
|||||||| | ||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1772 TATTAGAT-A---ATTTTTCTTGTAAATAAAACTAAGATCGGT-ATAGGTAAGCAT---- 1822
Query 1769 TGCATGCCTATAAACCGATGTATGCAAGTAATAACTCTGTaaaaaaaaCGATACAGATAG 1828
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1823 TGCATGCTTATAAACCGATGTATGCAAGTAATAACTCTGTAAAAAAA-CGTTACAGATAG 1881
Query 1829 ATTGTAACCGCTTTGTATGTTAACATACAAAAGTGAGTGATACCTATTAAAGGGATTTTT 1888
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1882 ATTGTAACCGCTTTGTATGTTAACATACAAAAGTGAGTGATACCTATGAAAGGGATTTTT 1941
Query 1889 GAATA 1893
|||||
Sbjct 1942 GAATA 1946
Score = 1291 bits (699), Expect = 0.0
Identities = 920/1024 (90%), Gaps = 26/1024 (3%)
Strand=Plus/Plus
Query 1 ATCCaaaaaggagaaaaacaaaaaaaaaaacaaaacaaaaccaaaacc--aaaaa-aaaa 57
|||| |||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||
Sbjct 1 ATCCCAAAAGGAGAAAAAC-AAACAAAAAACAAAACAAAACAAAAACCAAAAAAACAAAA 59
Query 58 aaa-aaaTGGCAAGAATTTCACTAGGGATATGTCTGATGTTAGTAGTAGCATCAAGTGTG 116
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAATAAATGGCAAGAATTTCACTAGGGATATGTCTGATGTTAGTAGTAGCATCAAGTGTG 119
Query 117 ATCTATGAAGCGCAAGGAACGTTCTTATTAAAACTTTACTTGAAGAAGAATTTTCCAAGA 176
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
Sbjct 120 ATCTATGAAGCGCAAGGAACGTTCTTACTAAACCATTACTTGAAGAAGAATTTTCCAAAA 179
Query 177 AAATGTAACGAGTTTACGCCTTTCGCCAACAAGGGTATGATGACGTTGGTGACTGATCTA 236
||||| |||||||||||||||| ||| |||||||||||||| ||||||||||| |||||
Sbjct 180 AAATGCAACGAGTTTACGCCTTACGCTAACAAGGGTATGATAACGTTGGTGACCGATCTC 239
Query 237 GAAGGTAGCTCTCCCGCGACTGCAGAGTTCAAGACATTCTTTACACAGTTCAAGTCTTAC 296
||||||||| ||| || ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GAAGGTAGCAGTCCGGCCACTACAGAGTTCAAGACTTTCTTTACACAGTTCAAGTCTTAC 299
Query 297 ATGTCCTTCATCGAGACGACATCTGCCTCAACAAAAAATGTTGATGCCGAGATGACAACC 356
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 300 ATGTCTTTCATCGAGACAACATCGGCCTCAACAAAAAATGTTGATGCCGAGATGACAGCT 359
Query 357 AAATGTGACGCACTTTTCAAGGCCATGTCTGCATTGAGTGCTGGTAAAGGCGAAAAATCA 416
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 360 AAATGTGACGGTCTTTTCAAGGCCATGTCTGCATTGAGTGCTAGTAAAGGCGTCAAATCA 419
Query 417 GCGGAGGCTGGGGGTATGAAGGCGACCCTGTTGTCTATGGGAAAGACTTTGGTTGAGCAG 476
||||| |||||| |||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 420 GCGGATGCTGGGAGTATGAAGATGACCATGTTGTCGATGGGAAAGACTTTGGTTGAGCAG 479
Query 477 AAGAAGAATACAAAGATAATGACATTGAAGCAAAAGAAAGAGTTGGTCATATCTATGGTG 536
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 480 AAGAAGAATACAAAGATAATGACATTGAAGGAAAAGAAAGAGTTGGTCATAGATATGGTG 539
Query 537 AAATGGACTAAAATGGTTGCTACATTCGTAAAGTCGGCCTCCGAGAAGAAAGGAAAGTCA 596
||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||
Sbjct 540 AAATGGACTAAAATGGTCGCTACATTTGTGAAGTCGGCCTCCGAGCAGAAAGGAAAGTCT 599
Query 597 ATCAATATAGCATCTTATGGTCTTGATGTCGATGTTAATGACAGTTCTATTGTTGGTGGA 656
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 600 ATCAATATAGCATCTTATGGTCTTGATGTCGATGTTAACGATAGTTCTATTGTCGGTGGA 659
Query 657 GCTGCAAGTAGTGAATC--C-TCAACTAAATCTGGAGCAGTTTCCACTAGCGGAAGTGTT 713
||||||||||||||||| | || |||||||||||| | ||||||| |||||||||||||
Sbjct 660 GCTGCAAGTAGTGAATCATCCTCCACTAAATCTGGATCTGTTTCCAGTAGCGGAAGTGTT 719
Query 714 TCTACCAAGACAAAAGAATCGAGTAGT-G-G-AAGTTCTTCCAGCGGAAGTGTTGATACC 770
||||||||| | ||||||||||||||| | | ||||||| |||| |||||||||| ||||
Sbjct 720 TCTACCAAGTCGAAAGAATCGAGTAGTAGTGGAAGTTCTGCCAGTGGAAGTGTTGCTACC 779
Query 771 AAATCAAAAGAATCAAGCGGTGGAAGTGTTGCTGCCAAATCAAAAGAATCAAGCGGTGGA 830
||||| |||||||| ||||||||||||| |||| ||||||| |||||||| |||||||||
Sbjct 780 AAATCCAAAGAATCCAGCGGTGGAAGTGCTGCTACCAAATCCAAAGAATCTAGCGGTGGA 839
Query 831 AGTGCTGCTGG-AG--C-AAATT-TC-A-------AAGA-C-ACTACAGGTAAAAATTCG 875
||||||||| | | ||| || | ||| | ||||||||||||| ||||
Sbjct 840 AGTGCTGCTACCAAATCCAAAGAATCTAGTGGTGGAAGTGCTACTACAGGTAAAACTTCG 899
Query 876 GGCAGTCCGAGCGGAAGTCCCAAGGCCAGCCCATCTGGTTCAGTTGGTGGCAAATCCTCT 935
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 900 GGCAGTCCGAGCGGAAGTCCTAAGGCCAGCCCATCTGGTTCAGTTAGTGGCAAATCATCT 959
Query 936 TCAAAAGAAAGTGCGAGTGCTCAAGGAGGCGCAAGTTCTCAAGGAAGCGCTAGTGCTCAA 995
||||||| ||| || |||||||||||| |||||||| |||||||||| || |||||||||
Sbjct 960 TCAAAAGGAAGCGCAAGTGCTCAAGGAAGCGCAAGTGCTCAAGGAAGTGCAAGTGCTCAA 1019
Query 996 GGAA 999
||||
Sbjct 1020 GGAA 1023
> AT3G28790.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10813331-10815699 REVERSE LENGTH=2184
Length=2184
Score = 291 bits (157), Expect = 2e-77
Identities = 463/605 (77%), Gaps = 43/605 (7%)
Strand=Plus/Plus
Query 56 aaaaaaaaTGGC-AAGAATTTCACTAGGGATATGTCTGATG-TTAGTAGTAGCATCAAGT 113
|||||||||||| || ||||| ||||| ||||||||| || ||| | || |||||||||
Sbjct 105 AAAAAAAATGGCGAAAAATTT-ACTAGCAATATGTCTGGTGTTTA-TGGTTGCATCAAGT 162
Query 114 GTGATCTATGAAGCGCAAGGAACGTTCTTATTAAAACTTTACTTGAAGAAGAATTTTCCA 173
||| | ||||||| |||||| || ||||| ||||| |||||||||| || ||| |||||
Sbjct 163 GTGGTTTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGAGGAGGAAGTTTCCC 222
Query 174 AGAAAATGTAACGAGTTTACGCCTT-TCGCCAACAAGGGTATGATGACGTTGGTGA-CTG 231
||| |||| ||| ||| | |||| | || ||| |||||| ||| | | |||| |
Sbjct 223 AGACGTTGTATCGACTTTGCCCCTTAT-GCTGGCAAAGGTATGTTGATGCTCGTGAGC-A 280
Query 232 ATCTAGAAGGTAGCTCTCCCGCGACT-GCAGAGTTCAAGAC-ATTCTTTAC-ACAGTTCA 288
| || |||||| | | |||||| ||| | ||||||||| || ||||||| | || |||||
Sbjct 281 ACCTTGAAGGTGGATGTCCCGCAACTAG-AGAGTTCAA-ACAATTCTTTTCAAC-GTTCA 337
Query 289 AGTCTTACATGTCCTTCATCGAGAC-GA-CATC--T-GCCTCAACAAAAAATGTTGATGC 343
||||||||||| ||| ||| || | | |||| | || || | ||||| | ||||
Sbjct 338 AGTCTTACATGAGCTTTATC-AG-CTCAGCATCGATATCCGCATCGAAAAACATCGATGT 395
Query 344 CGAGATGACA-ACCAAATGTGACGCACTTTTCAAGGCCATGTCTGCATTGAGTGCTGGTA 402
||||||| | | |||||| |||| |||||| ||||||||||||| ||||
Sbjct 396 GGAGATGA-ATGGGAGATGTGAATTGCTTTCCAAGGCTATGTCTGCATTGA---CTGG-- 449
Query 403 AAGGCGAAAAATCAGCGGAGGC-TGGGGGTATGAAGGCGACCCTGTTGTCTATGGGAAAG 461
|| || |||| |||| | | | || || | || |||| ||||||| |||||||||
Sbjct 450 AA-GC--AAAAGCAGC-CAATCATCGGAGT-TAAAAATGACCATGTTGTCAATGGGAAAG 504
Query 462 ACTTTGGTTGAGCAGAAGAAG-AA--TACAAAGATAATGACATTGAAGCAAAAGAAAGAG 518
||||||||||||||||||| | || | ||| ||| ||| ||||||||||||||||||||
Sbjct 505 ACTTTGGTTGAGCAGAAGAGGCAAGGTTCAAGGATGATGTCATTGAAGCAAAAGAAAGAG 564
Query 519 TTGGTCATATCTATGGTGAAATGGACTAAAATGGTTGCTA-CATTCGTAAAGTCG-GCCT 576
||||| | ||||||||||||||||| ||||||| || ||||||||||| | | |
Sbjct 565 TTGGTTGTGGCTATGGTGAAATGGACTCGAATGGTTA-TAACATTCGTAAAGA-GTGTCG 622
Query 577 CCGAGAAGAAAGGAAAGTCAATCAAT-ATAGCATCTTATGGTCTTGATGTCGATGTTAAT 635
||||||||| ||||||||| || || | | | ||||| ||||||||||| |||||||||
Sbjct 623 CCGAGAAGAGAGGAAAGTCGATTGATGA-ATCGTCTTACGGTCTTGATGTTGATGTTAAT 681
Query 636 GACAG 640
| |||
Sbjct 682 GCCAG 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5