BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484654
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28840.1 | Symbols: | Protein of unknown function (DUF1216)... 1568 0.0
> AT3G28840.1 | Symbols: | Protein of unknown function (DUF1216)
| chr3:10838409-10839946 FORWARD LENGTH=1448
Length=1448
Score = 1568 bits (849), Expect = 0.0
Identities = 1259/1447 (87%), Gaps = 68/1447 (5%)
Strand=Plus/Plus
Query 1 Taaaaaagattaaac-aaaa-aac-aaaaaaatggcaaaaaTTTCATTAGCATTAGGTCT 57
||||||| ||||||| |||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 30 TAAAAAATATTAAACAAAAAGAACAAAAAAAATGGCAAAACTTTCATTAGCATTAGGTCT 89
Query 58 ATTGCTACTAGTAGCATTAAGTGAGGTCTACGAAGTGCAAGGGACGTTCTTATTTAGGCA 117
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 90 ATTGCTACTATTAGCATTAAGTGAGGTCTACGAAGTGCAAGGGTCGTTCTTATTGAGGCA 149
Query 118 TTACTTGAGGAAATTTCCCAGAAGGTCCAGAGACTTTCGACCATTCGCTTGCAAG-GGTA 176
|||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 150 TTACATGAGGAAATTTCCCAGAAGGTCCAGAGACTTTCGGCCATTCGCTTGC-AGAGGTA 208
Query 177 TGTTGAAGTTCGTGGACGTTTTGGAGGTTAGGTGTCCATTGAAGCCACAATATAAGAGCT 236
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||
Sbjct 209 TGTTGAAGTTCGTGGACGTTTTGGAGCTTAAGTGTCCATTAAAGCCACAATACAAGAGCT 268
Query 237 TCTTCGGAAACCTAAGATCTTACATGAACTTTATAAACTCGGCGTCCGGGTCGAAAAACT 296
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 269 TCTTCGGAAACCTAAGGTCTTACATGAACTTCATAAACTCGGCATCCGGGTCGAAAAACT 328
Query 297 TTGATGCCGAGCTAAAAGGGAAAGCCCAGGGTCTTC-TCTCAGCTATGTCTGCAATGAGT 355
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 329 TTGATGCCGAGCTAAAAGGGAAAGCCCAGGG-CCTCTTCTCAGCTATGTCTGCAATGAGT 387
Query 356 GGCAAAGGCGGAGCATCGGCTGATTCTAGCAAGGTTATGGATACATTGTTGTCAATGGGA 415
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 388 GGCAAAGGCGCCGCATCGGCTGATTCTAGCAAGGTTATGGATACATTGCTGTCAATGGGA 447
Query 416 AAGACTTTGGGCAACCAGCAGCAGAGCGGTTCAACGGTAATGTCGTTTGGACAAAGGAAA 475
||||| ||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 448 AAGACATTGGGCACCCAACAGCAGAGCGGTTCATCGGTAATGTCGCTTGGACAAAGGAAA 507
Query 476 GAGATGATCATGTCTATGGTGAAATGGGCACAAACAATTGGTCAATTTGTCGCGAGTGCT 535
||||||||||||||||||| ||| ||||||||||| |||||||||||||| | |||||||
Sbjct 508 GAGATGATCATGTCTATGGCGAAGTGGGCACAAACGATTGGTCAATTTGTTGTGAGTGCT 567
Query 536 GCAGCAAAGAGCGGTAACAAAATCGATATATCATCTTTAGGAATTGATGGTATTGATGCT 595
|||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 568 GCAGCAAAGAGCGGAAACAAAATTGATATCTCATCTTTAGGAATTGATGGCATTGATGCT 627
Query 596 AATGCTGCCGCCGGAGCTGGAGATTCTACTGCCA------------CTG-----G-AACT 637
| |||||||| | |||||||||||||||||||| ||| | ||||
Sbjct 628 AGTGCTGCCG--G-AGCTGGAGATTCTACTGCCAGTGGTGGAGTTTCTGCCACCGGAACT 684
Query 638 GGAAGTTCTGGCGCGACAACTGGAGGTTCTACCACTGCTGGCTCAGATACGGCAGCTGGA 697
||||||| ||||||| | |||||||||||| | || ||||||||||||| |||||||||
Sbjct 685 GGAAGTTATGGCGCGGGAGCTGGAGGTTCTAGCGCTTCTGGCTCAGATACCGCAGCTGGA 744
Query 698 GGCACTACCGCTGCTGGCG-CTGGTACTGCAGCTGGAGGTTATACCGCTACTGGCT-CTG 755
||||||||||| |||| | | ||| ||||||||||| | ||| || |||| |
Sbjct 745 GGCACTACCGCAACTGGAGGCAC-TACCGCAGCTGGAGGCTCTACGGCCGCTGGAGGCAC 803
Query 756 GTACCGC-AGCTGGCACTGGTACCACAACTGGCGCTGGTAC-AGCAGCTGGCT-CTGGTA 812
||| || || ||| |||||||| || ||| |||| | | ||||||| | | ||
Sbjct 804 -TACTGCTAG-TGGTGCTGGTACCGCA---GGCTATGGTGCCA-CAGCTGGAGGC-GCTA 856
Query 813 CTGC-AGCTGGAGGTTATACAACTA-CTA-ACTCTGGTACCGC-AGCTGGCGCTGGTACA 868
| || || ||| | | ||| | | || | | |||||| || || |||||||||
Sbjct 857 CCGCTAG-TGGCGCTGGTACTGC-AGCTGGAGGCAC-TACCGCTAG-TGACGCTGGTACC 912
Query 869 GCAGCTGGAGGCACTACCGCC-GCTGGCCCTGGTACCGCAGCTGGAGGCACTACCGCCGC 927
||||||||| |||||||| | |||| |||||||||||||||||||||| ||||| ||
Sbjct 913 GCAGCTGGA---ACTACCGCTAG-TGGCGCTGGTACCGCAGCTGGAGGCACAACCGCAGC 968
Query 928 TGGCGCTGGTACCGCAGCTGGAGGCAC-TACCGCCGCTGGCGCTGGTACCGCAGCTGGAG 986
||| |||||| |||||||||| ||| | |||| ||||| |||||| ||||||||||||
Sbjct 969 TGGGGCTGGTGCCGCAGCTGG-GGCTGGTGCCGCAGCTGGGGCTGGTGCCGCAGCTGGAG 1027
Query 987 GCACTACCGCTGCTGGCAGTGTAAGTGGAAGCTATGGCAGTAGTGGAGGAAGTGCTTCAA 1046
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1028 GCACTACCGCCGCTGGCGGTGTAAGTGGAAGCTATGGCAGTAGTGGAGGAAGTGCTTCGA 1087
Query 1047 ACACCAATGTTGGAACTAACAGTTGCACCACAAATGCGTGTTCTAATGGTGGTGGAGCCT 1106
||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 1088 ACACCAATGGTGGAACTAGTAGTTGCGGCACAAGTGCGTGTTCTAATGGTGGTGGAGCCT 1147
Query 1107 CCTTCAAAGGTGCTATGAACTTTCAAGGAAAGGCATCCTCTCGGTCTCAAGAAGCCGCGT 1166
|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| || |
Sbjct 1148 CCTTTAAAGGTGCTATGAACTTTCAAGGAAAGGCATCCTCTCAGTCTCAACAAGCTGCAT 1207
Query 1167 CAACCCAAACTTCTGATGGCTCTAGTTAGAAAAGGGCCGACCTAGCATATATATAAACGT 1226
|| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1208 CATCCCAAACCTCTAATGGCTCCAGTTAGATAAGGGCCGACCTAGCATATATATAAACGT 1267
Query 1227 A--T-T-AATATTATTTAAATAAGAAGACGGCCCTGCTAACATATTAAAGCAGCGAGCTG 1282
| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1268 ACGTATTAATATTATTTAAATAAGAAGATGGCCCTGCTAACATATTAAAGCAGCGAGCTG 1327
Query 1283 TAGAATGTTT-GGCTTTATATATCTAAGCCTATTTTTTATAATATATATGAGAAGATTTT 1341
|||||||||| |||||||| ||||||||||| |||| |||||||| ||||| |||||
Sbjct 1328 TAGAATGTTTTGGCTTTATGTATCTAAGCCT-TTTTCTATAATAT----GAGAATATTTT 1382
Query 1342 GTATTAACACAAGATTTTGGCTA-TTTAGTTTAGATCAAACGTGTTCACGTGCTTTTTCT 1400
|| |||||||||||| |||| || |||||||| ||||||||| |||||||| ||||||||
Sbjct 1383 GTGTTAACACAAGATATTGG-TAATTTAGTTTTGATCAAACGGGTTCACGTACTTTTTCT 1441
Query 1401 TGACTGT 1407
|||||||
Sbjct 1442 TGACTGT 1448
Score = 91.6 bits (49), Expect = 2e-17
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 848 ACCGCAGCTGGCGCTGGTACAGCAGCTGGAGGC-ACTACCGCCGCTGGCCCTGGTACCGC 906
||||||||||| |||||| | |||||||| ||| | |||| ||||| ||||| ||||
Sbjct 961 ACCGCAGCTGGGGCTGGTGCCGCAGCTGG-GGCTGGTGCCGCAGCTGGGGCTGGTGCCGC 1019
Query 907 AGCTGGAGGCACTACCGCCGCTGGCG 932
||||||||||||||||||||||||||
Sbjct 1020 AGCTGGAGGCACTACCGCCGCTGGCG 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5