BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484655
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28850.1 | Symbols: | Glutaredoxin family protein | chr3:10... 2080 0.0
AT5G39865.1 | Symbols: | Glutaredoxin family protein | chr5:15... 303 2e-81
> AT3G28850.1 | Symbols: | Glutaredoxin family protein | chr3:10848669-10850122
FORWARD LENGTH=1454
Length=1454
Score = 2080 bits (1126), Expect = 0.0
Identities = 1366/1478 (92%), Gaps = 31/1478 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTGTGCGAGTTCCAAACACCGTAAGCGTTGTAACCATTGCCGGCGAGGATATTCT 60
||||||||||||||||| || || |||||||||||| |||||||||| |||||||||||
Sbjct 1 ATGGGTTGTGCGAGTTCGAAGCATCGTAAGCGTTGTCTCCATTGCCGGAGAGGATATTCT 60
Query 61 CCTCCGGTGGATGTACCGAGAAGTCACTCGGTGCATCACGCATCACAAAACTCTGAAGAT 120
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CCTCCGGTGGATGTACAGAGAAGTCACTCAGTGCATCACGCATCGCAAAACTCTGAAGAT 120
Query 121 AGTTGTCACATGGTGGCTCTAAGTTCCTCAAGCCTTGGATCTCTCAAGCTATGTGATTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTTGTCACATGGTGGCTCTAAGTTCCTCAAGCCTTGGATCTCTCAAGCTATGTGATTCT 180
Query 181 TCTTTTGGGCATAATCACAAACACTTGGCAGACTTCAGTGAGAAGCTTGTTTCTGAAGAA 240
||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||
Sbjct 181 TCTTTTGGGCATAATCACAAACACTTGGCGGACTTTAGCGAGAAGCTTGTTTCTGGCGAA 240
Query 241 TCTGGGAAAACTGGAAATGGGTTTGGTCCAAATGTGGTTAAAGAGAAGTCAGATAAGGAG 300
|||| |||||||||||||||||||||||| ||||| || | ||||||||||||||| |||
Sbjct 241 TCTGTGAAAACTGGAAATGGGTTTGGTCCGAATGTTGTCAGAGAGAAGTCAGATAAAGAG 300
Query 301 AAATCGAATTTGGAATTGCAGGCTAAGCTTATGGAAGCAAAGGTATGGTCAAGTATGATG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAATCGAATTTGGAATTGCAAGCTAAGCTTATGGAAGCAAAGGTATGGTCAAGTATGATG 360
Query 361 AATGAGAAGATACCGAAGATTGTACCGAAAACTCCGATTATTACGCCTCCTGGAGAGCCA 420
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 361 AATGAGAAGATACCGAAGATTGTACCGAAAACTCCCATTGTTACGCCTCCTGGTGAGCCA 420
Query 421 GAAACGATTAATACTTGGGAAATGATGGATGGGCTTGAAGATGTTTTAAGTCCTTTACGA 480
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 421 GAAACGATTAATACTTGGGAAATGATGGATGGTCTTGAAGATGTTTTGAGTCCTTTACGA 480
Query 481 TCACCTAATCATGTTAAGAGTTTTTCGTTTGATATTGCTCGTAATGGCGATTGCGAACGA 540
||||||||||||||||||||||| ||||||||| ||| || | | | | | ||
Sbjct 481 TCACCTAATCATGTTAAGAGTTTCTCGTTTGATGTTGGTCCT-A-----A-T--G---GA 528
Query 541 GGTAAGTCGAATGGTAATGTGAAGCCGGTTTGGCTTCAAATGGAGGAAGAAGAAGAAGGG 600
|||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 529 GGTAAGTCTAATGGTAGTGTTAAGCCGGTATGGCTTCAAATGGAGGAGGAAGAAGAAGGG 588
Query 601 TTTGAAGATTTTGATCCTGAGATCATTTCTTCGTTTAGGAAATCACTTCAAGAACTTCCT 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 589 TTTGAAGATTTTGATCCTGAGATCATTTCTTCGTTTAGGAAATCGCTTCAAGAACTTCCT 648
Query 661 TCTGATCATCCGTTTCACATTTCGAATCGTGATTTCGAATTGAAACCGCGGTTCAATTTC 720
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 649 TCTGATCATCCGTTTCACATTTCGAACCACGATTTCGAATTGAAACCGCGGTTCAATTTC 708
Query 721 TCTGATGAGGAAAAGGAGGAAGCTTTGGATGTAGCAGGAAAAAGTGTTGGTAAAGAGAAA 780
||||||||||||||||||| | ||| | | | | |||||||||||||||||| |
Sbjct 709 TCTGATGAGGAAAAGGAGG-A-----GGA-G--G-A--ACAAAGTGTTGGTAAAGAGAGA 756
Query 781 GTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACATATGAAGAGAGCTGCGAT 840
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 757 GTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACTTATGAAGAAAGCTGTGAT 816
Query 841 GTTCGGATTATACTAAAGAGCCTCGGAATTAGAGTGGATGAGCGAGATGTATCGATGCAT 900
|||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 817 GTTCGGGTTATACTAAAAAGCCTCGGGATTAGAGTGGATGAGCGAGATGTGTCGATGCAT 876
Query 901 TCGGGTTTCAAAGGCGAGTTGAAGGAGTTATTAGGGGATAAGTTCAACAATGGCGTTGGG 960
||||||||||||| ||||||||||||| || ||||||| ||||| ||||| || ||||||
Sbjct 877 TCGGGTTTCAAAGACGAGTTGAAGGAGCTACTAGGGGAAAAGTTTAACAAAGGTGTTGGG 936
Query 961 ATTACTTTACCTAGAGTTTTCTTGGGAAGGAAGTATATCGGGGGAGCAGAGGAGATTCGG 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 937 ATTACTTTACCTAGAGTTTTCTTGGGAAGGAAGTATATTGGGGGAGCAGAGGAGATTCGG 996
Query 1021 AAGTTAAACGAAGATGGAAAGCTCGAGAAGCTTCTTGAAGGCTGCGAGAGGGTGGAAGAA 1080
||||||||||||||||| ||||| ||||||||||||| ||| || |||||||||||||||
Sbjct 997 AAGTTAAACGAAGATGGGAAGCTTGAGAAGCTTCTTGGAGGGTGTGAGAGGGTGGAAGAA 1056
Query 1081 AACCAAAATGGTAATGGTCAAGAATGCGAGGCTTGTGGAGATGTAAGGTTTGTGCCGTGT 1140
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 1057 AACCAAAATGGTAATGGTCTAGAATGTGAAGCTTGTGGAGATGTAAGGTTTGTGCCGTGT 1116
Query 1141 GAGACATGTTCAGGGAGCTGCAAAGTGTACTatgaatatgaagacga--a-gacgacgac 1197
|||||||||||||||||||||||||||||||||||||||||||| || | || || ||
Sbjct 1117 GAGACATGTTCAGGGAGCTGCAAAGTGTACTATGAATATGAAGATGATGATGATGATGAT 1176
Query 1198 gaagaagaagaagatgatgaaagtgtaaaggaagaacgagaGTATGGGTTTCAAACATGT 1257
|| |||| || |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1177 GATGAAGGTGATGATGATGAAAGTGTTAAGGAAGAAAGAGAGTATGGGTTTCAAACATGT 1236
Query 1258 CCTGATTGTAATGAGAATGGTCTCATTAGATGTCCTGTTTGTTGTGATTAGTTGTTTGAA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CCTGATTGTAATGAGAATGGTCTCATTAGATGTCCTGTTTGTTGTGATTAGTTGTTTGAA 1296
Query 1318 CATACACACAAGAAAAGGGAACCTTAAA-TTGTTCTTTTTT---GTTTTGTTTACTAAAG 1373
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1297 CATACACACAAGAAAAGGGAACCTTAAAATTGTTCTTTTTTTTTGTTTTGTTTACTAAAT 1356
Query 1374 TTGAGTTATGAGTACTTGAGGGTTTTATTGCCTCTAAAGATTTTGTTGTACATAAAGAGG 1433
||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1357 TTGAGTTATGAGTGCTTGAGGGTTTTATTGCCTCTTAAGTTTTTGTTGTACATAAAGAGG 1416
Query 1434 TTTTTGATTGTGAAAGTGTAAAATTGAAATTAGTAAGT 1471
| ||||||||||||||||||||||||||| ||| ||||
Sbjct 1417 TCTTTGATTGTGAAAGTGTAAAATTGAAACTAGGAAGT 1454
> AT5G39865.1 | Symbols: | Glutaredoxin family protein | chr5:15965461-15967173
REVERSE LENGTH=1713
Length=1713
Score = 303 bits (164), Expect = 2e-81
Identities = 346/433 (80%), Gaps = 16/433 (4%)
Strand=Plus/Plus
Query 769 GGTAAAGAGAA-AGTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACATATGA 827
|||||||| || |||| |||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1108 GGTAAAGA-AAGAGTGGTACTTTACTTCACAAGCCTTAGAGGTATAAGGAAAACATATGA 1166
Query 828 AGAGAGCTGCGATGTTCGGATTATACT-AAAGAGCCTCGGAATT-AGAGTGGATGAGCGA 885
||| ||||| || | ||||| ||||| ||| ||| | |||||| || | ||||||||
Sbjct 1167 AGACTGCTGCAATATCCGGATAATACTGAAA-AGCTTAGGAATTCGGA-TCGATGAGCGC 1224
Query 886 GATGTATCGATGCATTCGGGTTTCAAAGGCGAGTTGAAGGAGTTATTAG-GGGATAAGTT 944
|||||||||||||||||||||||||||| ||| ||||| || | || | ||| ||| ||
Sbjct 1225 GATGTATCGATGCATTCGGGTTTCAAAGATGAGCTGAAGAAGCTCTTGGAGGG-TAAATT 1283
Query 945 CAACAATGGCGTTGGGATTACTTTACCTAGAGTTTTCTTGGG-AAGGAAGTATATCGGGG 1003
|||||| |||||||| || || | ||||||||||||||||| || |||||| | || |
Sbjct 1284 CAACAACGGCGTTGGAATAACCCTGCCTAGAGTTTTCTTGGGGAAC-AAGTATCTTGGCG 1342
Query 1004 GAGCAGAGGAGATTCGGAAGTTAAACGAAGATGGA-AAGCTCGAGAAGCTTCTTGAAGGC 1062
||| |||||||||| |||||| || ||| |||| || || || ||||| | ||| |
Sbjct 1343 GAGTAGAGGAGATTAAGAAGTTGAATGAAAATGGGGAA-CTTGAAAAGCTGATAAAAGAC 1401
Query 1063 TGCGAGAGGGTGGAAGAAAAC-CAAAATGGTAATGGTCAA-GAATGCGAGGCTTGTGGAG 1120
|| || | ||| ||||| | || ||| |||| || ||||| |||||||||||||
Sbjct 1402 TGTGAAATGGTTGAAGATGGCTCACCG-GGTTTTGGT-AACGAATGTGAGGCTTGTGGAG 1459
Query 1121 ATGTAAGGTTTGTGCCGTGTGAGACATGTTCAGGGAGCTGCAAAGTGTACTatgaatatg 1180
|||| |||||||||||||||||||||||||||| ||||||||| | ||| | ||| |
Sbjct 1460 ATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAACTTTACCACGAAGGCG 1519
Query 1181 aagacgaagacga 1193
|||| ||||||||
Sbjct 1520 AAGAAGAAGACGA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5