BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484658
Length=2532
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28880.1 | Symbols: | Ankyrin repeat family protein | chr3:... 2710 0.0
AT3G28890.1 | Symbols: AtRLP43, RLP43 | receptor like protein 4... 106 1e-21
> AT3G28880.1 | Symbols: | Ankyrin repeat family protein | chr3:10892435-10896074
FORWARD LENGTH=2498
Length=2498
Score = 2710 bits (1467), Expect = 0.0
Identities = 1791/1946 (92%), Gaps = 28/1946 (1%)
Strand=Plus/Plus
Query 576 AGACTTGATCGTTTTGCTTGGTGACAAGGACTTGACGGTTGTGAAACTACTTGCTGAGAA 635
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 547 AGAC-TGATCGTTTTGCTTGGTGACAAGGACTTGACGGTTGTGAAACTACTCGCTGAGAA 605
Query 636 GACAAAGGAAGTGGACGCTGTGGCTTTTGCATATGCCAAGGCTGGTGAGATAGTTTCTTT 695
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 606 GACAAAGGAAGTGGACGTTGTGGCTTATGCATATGCCAAGGCTGGTGAGATAGTTTCGTT 665
Query 696 GACTGCATTGTTGATTGTAGCAAGTGAGAAGATCAGAGAGGCAACTGTAGCATTAC---- 751
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 666 GACTGCATTGTTGATTGTAGCAAGTGGGAAGATCAGAGAGGCAACTGTGGCATTACGGGA 725
Query 752 -G-TGATGATGATGATTCTGTGCCAAAGTGTAAAAGGGAA-ACGATCTATGAGGCTGTTA 808
| ||||||||||||||||||| |||| | | | | || |||||||||||||| ||||
Sbjct 726 TGATGATGATGATGATTCTGTGGCAAAACGGGAGA-GAAAGACGATCTATGAGGCAGTTA 784
Query 809 TTCAAGAAGCGTTGCGTAGTAACAGCTCGACGCAAAGTGTATGCAGCGAGAAAAGAATGG 868
||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 785 TTCAAGAGGCGTTGCGTAGTAACAGCTTGACGCAAAGTGTATGCAGTGAGAAAAGAATGG 844
Query 869 TTTTTCTTAGAGAGATTGAGCTTCTTCAGCTCTTTGGTGCTGCAGTTTTTAGTGAATCTG 928
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TTCTGCTTAGAGAGATTGAGCTTCTTCAGCTCTTTGGTGCTGCAGTTTTTAGTGAATCTG 904
Query 929 TGGATAAGCAAACTTCACCACTTATCTCCATTGTACAGGCAGGAGATGAAGCTGTTCTTG 988
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 905 TGGATAAGCAAACTTCACCACTTATCTCCATTGTGCAGGCAGGAGATGAAGCTGTTCTTG 964
Query 989 AGCTGTTTATAAACACCAACTTAGATGTCAACGA-AAAAGATGCAGAAGGGAATACTGTT 1047
|||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||
Sbjct 965 AGCTGTTTATAAACACCAACTTCGATGTCAACGAGAAAA-ATATAGAAGGGAATACTGTT 1023
Query 1048 CTTCAATGTAGCCTGAAGGGATCGTCTGTGCCACATAAGCAGCAAACCAGAATCATGAGC 1107
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1024 CTTCAATGTAGCCTGAAAGGATCGTCTGTGCCACATAACCAGCAAACCAGAATCATGAAC 1083
Query 1108 CTACTTATTGCACACGGTGCCCGAGTTAACCAAAGGAACAAGTTGGGTTTATCTGCAGTA 1167
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1084 CTACTTATTGCACACGGTGCTCGAGTTAACCAAAAGAACAAGTTGGGTTTATCTGCAGTT 1143
Query 1168 CACTTTGCTGCTGCAAATGGCAATTTATCTGCACTTGAGATTCTACTAGCGGCCAACCCT 1227
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1144 CACTTTGCTGCTGCAAATGGCAATTTATCTACACTTGAGATTCTACTAGCGGCCAACCCT 1203
Query 1228 GAGTTAGTTAATGTCAAGACAGTAATCAAAGAGACGCCACTATTCTTCGCAGTGAAGAAT 1287
|| || ||||| | ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1204 GACTTGGTTAACATGAAGACGGTAATCAAAGAGACGCCACTATTCTTCGCTGTGAAGAAT 1263
Query 1288 AACCATCTTGAGTGTGTTGAGCTGCTTCTTCGATGTGGTGCAAGTATAGAGATTCATAAT 1347
|| |||||||| || || ||||| ||||||||||||||||||| || |||||||||||
Sbjct 1264 AATCATCTTGACTGCGTGGAGCTTCTTCTTCGATGTGGTGCAATTACGGAGATTCATAAC 1323
Query 1348 CTACGCAAAGAAACAGAACTTGCCCAGCCACAAAGTGCAGCAGTTCCAACAGACGCA-GA 1406
||||||||||||||||||||||| ||| ||||||||||||||||| || || | ||| |
Sbjct 1324 CTACGCAAAGAAACAGAACTTGCACAGTCACAAAGTGCAGCAGTTTCACCAAATGCAAG- 1382
Query 1407 TGATGAGGAAACTCTTGGATTTCTCGGAAATTCCGTTCCACCATGGCTCAAAAGTTTTGT 1466
|||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||
Sbjct 1383 TGATGAGGAAACTCTTGGATTTCTCGGAGATTCTGTTCCAACATGGCTCAAAACATTTGT 1442
Query 1467 AAACTGGCTTCCTCGGTATCTTCGAGATACATCAGCGAACTGGAGAGGGGCTGGATATCC 1526
|| ||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1443 AACCTGGCTTCCTCTGTACCTCCGAGATACATCAGCGAACTGGAAAGGGGCTGGATATCC 1502
Query 1527 CCTGTCATCCCTCAAAGCCGATTTCCGTGCTGTTTTTGGAATGGATCTCGATCACGCCTC 1586
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1503 CCTGTCATCCTTCAAAGCCGATTTTCGTGCTGTTTTTGGAATGGATCTCGATCACACCTC 1562
Query 1587 TCTTGGTTTCCCCAAGCTCATCGACTTCATCAAATATTTTCCAAAACTCTGTCAAATGAA 1646
||||| |||||| |||| ||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 1563 TCTTGATTTCCCTAAGCACATCGACTTTGTCAAATACTTTCCAAGACTCTGTCAAATGAA 1622
Query 1647 AGTCGTCCCCATAGGTAAAATTGGAGCTGCAACACACTGGGTGATGTTACCCACCAAATC 1706
||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 1623 AGTCGTCCCCATAGGTAAACTTGGAGCTGCAACACACTGGGTCATGCTACCCACCAAATC 1682
Query 1707 CAAGTGTTCTCAGCTCAAAGGAAGACCTCCTGAGCCACTCATTATCAGTAAGAATGACTC 1766
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1683 TAAGTGTTCTCAGCTCAAAGAAAGACCTCCTGAGCCACTCATTATCACTAAGAATGACTC 1742
Query 1767 TGTTGCTTCTCCC-GACAAACCAAAAGCCTTATCAGTTCCTCCAGGTTTTAAATTCTTAC 1825
||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1743 TGTTGCTTCTCCCAG-CAAACCAAAAGCCTTATCAGTTCCTCCAGATTTTAAATTCATAC 1801
Query 1826 AAGAAGCACATGACTCTAAAACCTTCAAAGCACCACCAGAACCAAAACCTCAACCTCCTC 1885
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1802 AAGAAGCACATGACTCTAAAACCTTCAAAGCTTCACCACAACCAAAAGCTCAACCTCCTC 1861
Query 1886 CTCCGTTGACTACAGCATCTT-C--CAACAACCAACGTCAACTAAAACATCCGGTACTAG 1942
|||| || | |||||||| | | |||||||||||||||||||||||| ||||| || |
Sbjct 1862 CTCCCTT-A--ACAGCATCGTACAACAACAACCAACGTCAACTAAAACACCCGGTTCTTG 1918
Query 1943 AGACACTTACAAGGATCAGAAACAGCACTTCCGTATTCTTTCTCCGTGAGTTCGACTTCT 2002
|||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 1919 AGACACTTACAAAGATCAGAAACAGCACTTCTGTCTTCTTTCTCCGTGAGTTTGACTTTT 1978
Query 2003 ACCAAAGCTATGAGACATGTTTAAAGGAAGGCATGTGTTTCTGGTGCAACAAGAACATGC 2062
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 ATCAAAGCTATGAGACATGTTTAAAGGAAGGCATGTGTTTCTGGTGCAACAAGAACATGA 2038
Query 2063 TTCTATGGGCAAACTTCCCATGCCGACACAAACTTTGGTGCAGCTCTTGTAAACAACAGG 2122
||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2039 TTCGATGGGCAAACTTCCCTTGCAGACACAAACTTTGGTGCAGCTCTTGTAAACAACAGA 2098
Query 2123 TTACTCAATCTGCT-CTAGGAGAGAAGAGCCTTGAGGAGGACCATCATAAGTGTGTGGTC 2181
||||||||||| || | ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2099 TTACTCAATCTACTTC-AGGAGAGAAGATCCTTGAGGAAGACCATCATAAGTGTGTGGTC 2157
Query 2182 TGTGATGCAAAAGTGGAACGTTTCGTCTTATCTCCACCGTTTGAATCAGATCACCATAGG 2241
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 2158 TGTGATGCAAAAGTGGAACGTTTCGTCTTGTCTCCACCGTTTGAATCCGGTCACCATAGG 2217
Query 2242 CTTTCAAGTGATCGCCCTAACAACGCAGAATTAGCCACTTCATTCCTTCAATTCCTCAGC 2301
||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 2218 ATTTTAAGTGATCGCCCTAACAACGCCGAATTAGCCACTTCTTTCCTTCAGTTCCTCAGC 2277
Query 2302 ATAAGGAATTCCATGAACAAGATGATACATCGTGGGATATAGAGAAAGGAACTTACAC-A 2360
|||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| | |
Sbjct 2278 ATAAGGAACTCCATGAACAAGATGATATATCGCGGGATATAGAGAAAGGAACTTACCCCA 2337
Query 2361 ACAACTTCGACTTCGTGTGGTGGTAATTGGATTTTAATAAACTT-GTAAATACAAACGAT 2419
|||||||| ||||||||| ||| ||| ||||||||| |||| || ||||||||||| |||
Sbjct 2338 ACAACTTCAACTTCGTGTCGTGATAAGTGGATTTTACTAAA-TTCGTAAATACAAAAGAT 2396
Query 2420 GATGGAGATGAAAGCTCTTCTTTAACAACATTTAAAGTACATATGGAACATTTC-GCGAT 2478
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||
Sbjct 2397 GATGGAGATGAAAGCTCTTCTTTAACAACATTTAGAGTACATATGGTACATTTTTGAGAT 2456
Query 2479 CCAAACCGGTCA-ACATATTATGGAA 2503
||||||||||| ||| |||||||||
Sbjct 2457 CCAAACCGGTCTTACAAATTATGGAA 2482
Score = 647 bits (350), Expect = 0.0
Identities = 443/487 (91%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 57 GGAATCTATGAGTTTCGATTTCACTGAG-TTTTGCGACTCCTACTCTCTTTATCCCACCG 115
|||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 65 GGAATC--TGAGTTTCGATTTCACTGAGATGTT-CGACTCCTACTCTCTTTATCCCACCG 121
Query 116 GAAAAGTATCTCC---GGTTGATTCTTACGTCA---CCGAGCTCGACAACGAAGAGATCA 169
||||| ||||||| ||||||||| ||||||| ||||||||||| |||||| || |
Sbjct 122 GAAAACTATCTCCGGTGGTTGATTCGTACGTCACCGCCGAGCTCGACGGCGAAGATATGA 181
Query 170 GAGACAACTACGCGTTTTTAGATTCCGTTTTAAAAGACAACAAATCTGAGTTTATTTCTC 229
||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||| |||
Sbjct 182 GAGACGACTACGCGTTTTTAGAGTCCGGTTTAAAAGACAACAAATCTCAGTTTATCTCTT 241
Query 230 ACGCTAAACGCATCTTAGTCGGAGAAGACGCAGAATCAGAGAGAATCGAAGCTATAAAGC 289
|||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 242 ACGCAAAACGCATCTTAGTCGGAGAAGACGCTGAATCAGAGAGAATCGAAGATTTAAAGC 301
Query 290 TTCTAAGCGCTTGTTGCAGTTACGATTCTATTAACTGTGCTTCGTCAATCATCAACGGTG 349
|||| | ||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 302 TTCTTACCGCTTGTTGCAGTTACGATTCCATCAACTGTGCTTCGTCAATCATCAACGGCG 361
Query 350 ACGTTGGATCGGTTCCGTATATCAACGATGTATGTTCCGATACAGGACTCTCGCCGTTGC 409
|||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||
Sbjct 362 ACGTTGGATCGGTTCCATATATCAACGATATTTGTTCCGATACAGGACTCTCGCTGTTGC 421
Query 410 ACACGGCGGCTGAGTATAACGCGCTACGGTGTGTTGAGATGCTTCTGAAACGACGCGCTC 469
|||| |||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct 422 ACACAGCGGCTGAGTCTCACGCGCCACTGTGTGTTGAGATGCTTCTGAAACGACGCGCTC 481
Query 470 GTACTGATATGAGAAGCAAAGATGAACGCGCTTTGATTCCTCTGGAGCTATCTCTCTCCA 529
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 482 GTACTGATATGAGAAGCAAAGACGAACGCGCTTTGATTCCTCTGGAGCTTTCTCTCTCCA 541
Query 530 ATGGCAG 536
||| |||
Sbjct 542 ATGTCAG 548
> AT3G28890.1 | Symbols: AtRLP43, RLP43 | receptor like protein
43 | chr3:10895977-10898841 REVERSE LENGTH=2293
Length=2293
Score = 106 bits (57), Expect = 1e-21
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 2424 GAGATGAAAGCTCTTCTTTAACAACATTTAAAGTACATATGGAACATTTC-GCGATCCAA 2482
|||||||||||||||||||||||||||||| ||||||||||| |||||| | |||||||
Sbjct 2293 GAGATGAAAGCTCTTCTTTAACAACATTTAGAGTACATATGGTACATTTTTGAGATCCAA 2234
Query 2483 ACCGGTCA-ACATATTATGGAA 2503
||||||| ||| |||||||||
Sbjct 2233 ACCGGTCTTACAAATTATGGAA 2212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125668192215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5