BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484659
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28900.1 | Symbols: | Ribosomal protein L34e superfamily pr... 691 0.0
AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:261... 279 1e-74
> AT3G28900.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr3:10902647-10904458 REVERSE LENGTH=623
Length=623
Score = 691 bits (374), Expect = 0.0
Identities = 416/435 (96%), Gaps = 7/435 (2%)
Strand=Plus/Plus
Query 1 ATCTCCTTTGGCCGTCACTTACTGACCTCAGAGCTAAGCGAAAATGGTTCAACGTCTTGT 60
||| |||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 ATCCCCTTTGGCCGACTCTTACTGACCTCAGAGCTCAGCAAAAATGGTTCAACGTCTTGT 60
Query 61 TTACCGATCACGTCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACCGATCACGTCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCC 120
Query 121 TGGTGGGAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGTGCCCTGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGTGCCCTGT 180
Query 181 TACTGGCAAGAGAATCCAAGGGATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TACTGGCAAGAGAATCCAAGGGATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCAAG 240
Query 241 GTTGGCAAGGAATGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGC 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGC 300
Query 301 TGTTAGGGAGAGGCAAGTGATTGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAA 360
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTTAGGGAGAGG-A--TC---GTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAA 354
Query 361 GAAGGTTTTGAAGCTTCAAAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAAAC 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAAAC 414
Query 421 GTTTTGGAA-CTTAT 434
||||||| |||||
Sbjct 415 TTTTTGGAGTCTTAT 429
Score = 93.5 bits (50), Expect = 2e-18
Identities = 100/120 (83%), Gaps = 19/120 (16%)
Strand=Plus/Plus
Query 428 AACTTATTTTCTAGGGATCGATAGACATGAGTCTTTTTGTTCACG---AAAAGA-GCAAA 483
|||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct 444 AACTTATTTTGTAGGGATCGATAGACATGAG--TTTTTGTTCACGAAAAAAAGAGGCAAA 501
Query 484 TGTTTG-TTTTTG-----TTC--A-----GTTTTGTTCTCCATTCAGATTTTACTTTCTC 530
|||||| |||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 502 TGTTTGTTTTTTGATAATTTCTGAGTTCTGTTTTGTTCTCCATTCAGATTTTACTTTCTC 561
> AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:26189836-26191323
FORWARD LENGTH=666
Length=666
Score = 279 bits (151), Expect = 1e-74
Identities = 301/371 (81%), Gaps = 20/371 (5%)
Strand=Plus/Plus
Query 29 CAGAGCTAAGCGAAAATGGTTCAACGTCTTGTTTACCGATCACGTCACTCTTACGCCACC 88
||||| ||||||||||||| || || ||||||||||||||||| ||| ||||||||||
Sbjct 50 CAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTTACGCCACC 109
Query 89 AAGTCCAACCAACACCGCATCGTCAAAACTCCTGGTGGGAAATTGACTTACCAGACGACG 148
|| |||||||| ||| | |||||||||||||| || || |||||||| |||||||| ||
Sbjct 110 AAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACCAGACCACT 169
Query 149 AACAAGAGAGCTAGTGGACCTAAGTG-CCCTGTTACTGGCAAGAGAATCCAAGGG-ATTC 206
|| |||||||||||||||||||| || ||| ||||| |||||| | || || ||| ||||
Sbjct 170 AAGAAGAGAGCTAGTGGACCTAAATGTCCC-GTTACCGGCAAGCGTATTCA-GGGTATTC 227
Query 207 CGCATTTGAGACCTGCTGAGTACAAAAGGTCGAGGTTGG-CAAGGAATGAG-AGGACAGT 264
| || ||||| || |||||||||| ||||| | ||| |||| || || ||||| ||
Sbjct 228 CTCACTTGAGGCCAACTGAGTACAAGAGGTC-ACGTTTATCAAGAAAC-AGGAGGACCGT 285
Query 265 GAATCGTGCATATGGTGGTGTTCTATCTGGAGT-TGCTGTTAGGGAGAGGCAAGTGATTG 323
||| ||||| |||||||| ||| | ||||| | |||||||||||| || || | |||
Sbjct 286 GAACCGTGCTTATGGTGGGGTTTTGTCTGGT-TCTGCTGTTAGGGAAAG--AA-TCATT- 340
Query 324 TCAGGGCCTTC-TTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAG 382
| | |||||| ||| | || || || ||||||||||||||||||||||||||||| |||
Sbjct 341 -C-GTGCCTTCCTTG-TGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAG 397
Query 383 GCGAAAGAGAA 393
|| |||| |||
Sbjct 398 GC-AAAG-GAA 406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5