BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484660
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28910.1 | Symbols: ATMYB30, MYB30 | myb domain protein 30 |... 2217 0.0
AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain p... 268 8e-71
AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain pro... 139 7e-32
> AT3G28910.1 | Symbols: ATMYB30, MYB30 | myb domain protein 30
| chr3:10911157-10913190 FORWARD LENGTH=1592
Length=1592
Score = 2217 bits (1200), Expect = 0.0
Identities = 1400/1489 (94%), Gaps = 43/1489 (3%)
Strand=Plus/Plus
Query 1 AGAGACCCAAGAGTCCAAGACCAAGAGGGGTCAGCAAATTTCTCTCTCT-CTTTT-tata 58
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 2 AGAGACCCAAGAGTCCAAGACCAAGAGGGGTCAGCAAATTTCTCTTTCTCCTTTTATATA 61
Query 59 tatatataGAAGAAGAAGTGGACATAGACCTTTGTCGCCAAGCTTAACCATTAGATCCAT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TATATATAGAAGAAGAAGTGGACATAGACCTTTGTCGCCAAGCTTAACCATTAGATCCAT 121
Query 119 TTCAAAGCTAAGCGTACTAATTAGTGTACTAAGGGTAGTGTGACTCATCATTACCATCTT 178
|||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 122 TTCAGAGCTAAGCGTACTAATTAGTGTACTAAGGGTAGTGTGA--C-TCATTACCACCTA 178
Query 179 AAGTTGTTTCAACTTTCTTCTA-TTTTCTTGGCAAAGAGTTATAGTGGGAAATAAA--GA 235
|||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 179 AAGTAGTTTCAATTTTCTTCTATTTTTCTTGGCAAAGAGTTATAGTGGGAAACAAAGGGA 238
Query 236 GAGGCTAATAAAG-----A--A-TTAATT-----AGTT-AA-ATCATAATGGTGAGGCCT 280
| || |||||||| | | |||||| |||| || ||||||||||||||||||
Sbjct 239 GTGGTTAATAAAGAATTAATTAGTTAATTAAGGGAGTTCAAGATCATAATGGTGAGGCCT 298
Query 281 CCTTGTTGTGACAAAGGAGGAGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATT 340
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 CCTTGTTGTGACAAAGGAGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATATCATT 358
Query 341 TTAGTTACTTACATCCAAGAACATGGTCCTGGTAATTGGAGAGCTGTTCCTACCAATACT 400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTAGTCACTTACATCCAAGAACATGGTCCTGGTAATTGGAGAGCTGTTCCTACCAATACT 418
Query 401 GGTATGTTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCA 460
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GG---GCTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCA 475
Query 461 GGAATCAAAAGAGGCAATTTCACTGAACATGAAGAAAAGATGATTGTTCATCTTCAAGCC 520
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 476 GGAATCAAAAGAGGCAATTTCACAGAACATGAAGAAAAGATGATTGTTCATCTCCAAGCC 535
Query 521 CTCTTAGGAAATAGATGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGAC 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTCTTAGGAAATAGATGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGAC 595
Query 581 ATTAAGAACTATTGGAACACTCATTTGAAGAAGAAACTCAACAAAATTAATCAAGATTCT 640
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 596 ATTAAGAACTATTGGAACACTCATTTGAAGAAGAAACTCAACAAAGTCAATCAAGATTCT 655
Query 641 CATCAAGAACTTGACCATTCCTCGCTCTCATCTTCACCATCGTCTTCTTCCGCTAATTCC 700
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 656 CATCAAGAACTTGACCGTTCCTCGCTCTCATCTTCACCATCGTCTTCTTCTGCTAATTCC 715
Query 701 AACTCAAACATATCAAGAGGCCAATGGGAGAGACGACTTCAAACCGATATCCACTTGGCG 760
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 716 AACTCAAACATCTCAAGAGGCCAATGGGAAAGGCGACTTCAAACCGATATCCACTTGGCG 775
Query 761 AAAAAGGCTCTCTCTGAGGCTTTATCTCCTGCTGTTGCACCAATCATCACATCTACAGTG 820
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 776 AAAAAGGCTCTCTCTGAGGCTTTATCTCCTGCCGTTGCACCAATCATTACATCTACAGTG 835
Query 821 ACAACAACATCCTCTTCAGCTGAATCAAGACGCTCTACTTCCTCAGCTTCCGGGTTTCTT 880
|||||||| || || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 836 ACAACAACGTCTTCCTCTGCTGAATCAAGACGCTCTACTTCCTCAGCTAGCGGGTTTCTT 895
Query 881 AGGACGCAAGAAACATCTACGACTTATGCCTCAAGCACCGAGAATATCGCGAAATTGCTC 940
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 896 AGGACGCAAGAAACATCTACAACTTATGCCTCAAGCACCGAAAATATCGCGAAATTGCTC 955
Query 941 AAAGGGTGGGTGAAAAACTCGCCAAAGACTCAAAACTCCGCGGATCAAGTCGCTTCTACA 1000
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 956 AAAGGGTGGGTGAAAAACTCGCCGAAGACTCAAAACTCCGCGGATCAAATCGCTTCTACA 1015
Query 1001 AACTCTGAGGTAAAGGAAGGGATCAAGAGTGATGATAGGAAGGATTGTGCAGGGGCATTT 1060
|||||||| |||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 1016 ------GAGGTAAAAGAAGTGATCAAGAGTGATGATGGGAAGGAGTGTGCAGGGGCATTT 1069
Query 1061 CAGTCATTTTCTGAGTTTGATCACTCATATCAACAGGCTGGAGTTTCACCTGATCATGAG 1120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1070 CAGTCATTTTCTGAGTTTGATCACTCATATCAACAGGCTGGTGTTTCACCTGATCATGAG 1129
Query 1121 ACCAAACCAGACATAACTGGATGCTGCAGTAACCAAAGTCAATGGTCTTTGTTTGAGAAG 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ACCAAACCAGACATAACTGGATGCTGCAGTAACCAAAGTCAATGGTCTTTGTTTGAGAAG 1189
Query 1181 TGGTTATTTGAGGATTCTGGTGGACAGATTGGTGATATTCTATTGGATGAAAACACTAAT 1240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TGGTTGTTTGAGGATTCTGGTGGACAGATTGGTGATATTCTATTGGATGAAAACACTAAT 1249
Query 1241 TTCTTCTGAAGAGTTTGCTT-AATCACATGGTTCTAATTTTAGGATCCTCGTCTCTACTA 1299
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 1250 TTCTTCTGAAGAGTTTGCTTTAATCACATGGTTCTAATTTTAGGATCCTCATCTCTA-T- 1307
Query 1300 tttttttttttt-ttttCCAAATTAACAT-GCTTAGATTATCGTGAGATAAATCATTAAT 1357
|||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1308 TTTTTTTTTTGGGTTTTCCAAATTAAC-TCGCTTAGATTATCGTGAGATAAATCAGTAAT 1366
Query 1358 AATTTTATTTATTTTCCCTCGTTAATT-ACAATTAATGATGGGGTTGTTTTATATATATG 1416
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 1367 AATTTTATTTATTTTCCCTCTTTAATTTACAATTAATGATGGGGTTGTTTTATATAT--G 1424
Query 1417 GCCCTGTGAATTCTGAAGGGGCCTGATATATATGTCCGCCCAATGATTT 1465
|||||||||||||||||||||||||| | | |||||| |||||||||||
Sbjct 1425 GCCCTGTGAATTCTGAAGGGGCCTGAAA-A-ATGTCCACCCAATGATTT 1471
> AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain
protein 94 | chr3:17539338-17541230 REVERSE LENGTH=1486
Length=1486
Score = 268 bits (145), Expect = 8e-71
Identities = 275/337 (82%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 299 GGAGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATTTTAGTTACTTACATCCAA 358
|||||||||||||| || ||||| || || ||||||||||| || ||| |||||||||||
Sbjct 226 GGAGTGAAGAAAGGACCATGGACACCAGAGGAAGATATCATCTTGGTTTCTTACATCCAA 285
Query 359 GAACATGGTCCTGGTAATTGGAGAGCTGTTCCTAC-CAATACTGGTATGTTGCTTAGATG 417
|||||||||||||| || |||||| |||| ||||| | | || || | ||| |||||
Sbjct 286 GAACATGGTCCTGGAAACTGGAGATCTGTGCCTACTC-ACACAGG--T-TTGAGGAGATG 341
Query 418 CAGCAAGAGTTGTAGACTT-AGATGGACAAACTAT-TTAAGGCCAGGAATCAAAAGAGGC 475
||||| || |||||| || || ||||| || ||| || | || || ||||| | ||
Sbjct 342 TAGCAAAAGCTGTAGA-TTGAGGTGGACTAATTATCTT-CGACCTGGGATCAAGCGTGGA 399
Query 476 AATTTCACTGAACATGAAGAAAAGATGATTGTTCATCTTCAAGCCCTCTTAGGAAATAGA 535
|||||||| || |||||||| ||||||||| | ||||||||||| || || ||||| ||
Sbjct 400 AATTTCACCGAGCATGAAGAGAAGATGATTCTCCATCTTCAAGCTCTTTTGGGAAACAGG 459
Query 536 TGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGACATTAAGAACTATTGG 595
||||| || || || |||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 460 TGGGCAGCTATAGCATCATATCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGG 519
Query 596 AACACTCATTTGAAGAAGAAA-CTCAACAAAATTAAT 631
||||||||||||||||| ||| ||||| || || |||
Sbjct 520 AACACTCATTTGAAGAA-AAAGCTCAAGAAGATGAAT 555
> AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein
16 | chr5:4974671-4976227 FORWARD LENGTH=1325
Length=1325
Score = 139 bits (75), Expect = 7e-32
Identities = 260/344 (76%), Gaps = 33/344 (10%)
Strand=Plus/Plus
Query 284 TGTTGTGACAAA-GGAGGAGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGAT-A-TCA-T 339
|||||||||||| | || |||||||||| |||||||| || || || ||| | | |
Sbjct 239 TGTTGTGACAAATTG-GGTTTGAAGAAAGGACCTTGGACACCAGAGGAGGATCAGAAACT 297
Query 340 TTTAGTTACTTACATCCAAGAACATGGTCCTGGTAA-TTGGAGAGCTGTT-CCT-ACCAA 396
||||| |||| || |||||||||||| ||| || |||| | | || ||| | ||
Sbjct 298 TTTAG---CTTATATTGAAGAACATGGTCATGG-AAGTTGGCGTTC-ATTGCCTGA-GAA 351
Query 397 TA-CTGGTATGTTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAA 455
| |||| | | | | ||||| | |||||||||||||| |||||||| ||||| |||
Sbjct 352 -AGCTGG--T-CTCCATCGATGCGGAAAGAGTTGTAGACTAAGATGGACTAACTACCTAA 407
Query 456 GGCCAGGA-ATCAAAAGAGGCAATTTC-ACTGAACATGAAGAA-AAGATGATTGTTCATC 512
| || || |||||||||||||| ||| ||| ||| |||||| || | ||| | || |
Sbjct 408 GACC-TGACATCAAAAGAGGCAAATTCAACT-TACAAGAAGAACAA-ACCATTATCCAAC 464
Query 513 TTCAAGCCCTCTTAGGAAATAGATGGGCTGCAATTGCGTCA-T-ATCTT-CCACAA-AGG 568
| || || || |||||||| |||||| | || ||||| | | | || || ||| || ||
Sbjct 465 TCCATGCTCTGTTAGGAAACAGATGGTCAGCGATTGC-T-ACTCAT-TTGCCA-AAGAGA 520
Query 569 ACAGACAATGACATTAAGAACTATTGGAACACTCATTTGAAGAA 612
|||||||| || || |||||||||||||||||||||||||||||
Sbjct 521 ACAGACAACGAGATCAAGAACTATTGGAACACTCATTTGAAGAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5