BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484661
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28917.1 | Symbols: MIF2 | mini zinc finger 2 | chr3:1092481... 1086 0.0
> AT3G28917.1 | Symbols: MIF2 | mini zinc finger 2 | chr3:10924817-10925640
FORWARD LENGTH=824
Length=824
Score = 1086 bits (588), Expect = 0.0
Identities = 717/777 (92%), Gaps = 18/777 (2%)
Strand=Plus/Plus
Query 1 GAGGTCTTCTTGTAATTGTTTTGATCTTTCAGTCCCTAACTATTTCCAACCGTAGAAATT 60
|||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 4 GAGGTCCTCTTGTAATTGTTTTGATCTTTCACTCCCTAACTATTTCGAGCCGTAGAAATT 63
Query 61 AAAGTAAAAGAACAAAAAC-TTATTATATATTTTTCTCTTCTTCTTTAATATATAGGCAA 119
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||
Sbjct 64 AAAGTAAAAGAACAAAAACTTTATTATACATTTTTCTCTTCCTCTTTAATATATATACAT 123
Query 120 TATTACAAGTTTAGATTTCATaaaaaaaa--CAATCAAGAAGAAGGAGCTAAGAGGAGAA 177
||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||||
Sbjct 124 TATTACAAGTTTAGATTTCATAAAAAAAAGTCAA-GAAGAAGAAAGAGCTGAGACGAGAA 182
Query 178 TTGAAGGGAGAAAGCATGAGGAAGCGTCAGGTGGTGTTGAGGAGAGCCTCGCCGGAGGAA 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 183 TTGAAGTGAGAAAGCATGAGGAAGCGTCAGGTGGTGTTGAGGAGAGCCTCGCCAGAGGAA 242
Query 238 CCTTCTAGAAGCTCGTCCACGGCTTCGTCTCTGACGGTGAGAACTGTGAGATACGGCGAG 297
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 243 CCTTCTAGAAGCTCGTCGACGGCTTCGTCTCTGACAGTGAGAACTGTGAGGTACGGAGAA 302
Query 298 TGTCAGAAGAACCATGCCGCGGCCGTGGGAGGTTACGCTGTTGACGGCTGCCGTGAGTTT 357
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 TGTCAGAAGAACCACGCTGCGGCGGTGGGAGGTTACGCTGTTGACGGCTGCCGTGAGTTC 362
Query 358 ATGGCAAGCCGAGGCGAGGAAGGTACCCTGGCAGCACTAACGTGCGCCGCCTGTGGCTGC 417
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 363 ATGGCAAGCCGAGGAGAGGAAGGTACCGTGGCAGCGCTAACGTGCGCCGCCTGTGGCTGC 422
Query 418 CACCGCAGTTTCCATCGAAGAGAAATTGCAACCGAGGTTGTTTGCGACTGTAATTCACCT 477
|| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 423 CATCGCAGTTTCCATCGGAGAGAAATAGAAACCGAGGTTGTTTGCGACTGTAATTCACCT 482
Query 478 CCTTCTACTGGAAATTAGACAAGAAAAATCTAGAGCTAGCTATGAGTGTGTTTGTGTCTT 537
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 483 CCTTCTACTGGAAATTAGATAAGAAAAATCTAGAGCTAGCTATGAGTGTGTTTGTGT--- 539
Query 538 TGTGTGTTACATATACAGAT--T-AATCTGAAAATATTATATTTGCTTTTTTATTTCTTC 594
|| | |||||||||||| | || ||||||||||| ||||||||||||| || ||||
Sbjct 540 -GT-T---ACATATACAGATGATGAAACTGAAAATATTTTATTTGCTTTTTT-TT-CTTC 592
Query 595 TTTAATATTAAGGGCTTGTGTTTCTTTGTGAATTTAAGAAGAAACTATTAGAGATTTATA 654
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 TTTAATATGAAAGGCTTGTGTTTCTTTGTGAATTTAAGAAGAAACTATAAGAGATTTATA 652
Query 655 GATTGGAGGTGGTGGAAGCAGTGAAAGATTTATTATAATTGGATGCTTTTGGGGTTTGAG 714
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 653 GATTGAAGGTGGTGGAAGCATTGAAAGATTTATAATAATTGGATGCTTTTGGGGTTTGAG 712
Query 715 AATGTTTAGGAAAAGGTTAGGCTTCTGAAGTGAAATATTAAGATTATTGtttttttt 771
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 713 AATGTTCAG-AAAAGGTTAGGCTTCTGAAGTGAAATATTAAGATTATTGTTGTTTTT 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5