BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484662
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28920.1 | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34... 1755 0.0
AT5G39760.1 | Symbols: AtHB23, HB23, ZHD10 | homeobox protein 2... 472 5e-132
> AT3G28920.1 | Symbols: AtHB34, HB34, ZHD9 | homeobox protein
34 | chr3:10940446-10941833 REVERSE LENGTH=1388
Length=1388
Score = 1755 bits (950), Expect = 0.0
Identities = 1271/1411 (90%), Gaps = 82/1411 (6%)
Strand=Plus/Plus
Query 1 atttattattcacatttattaatattttttatatctctccctattaaattatcttattct 60
|||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 1 ATTTATTATTCACATTTATTAACA-TTTTTATATCTCTCCCTATTAAATTATTTTATTCT 59
Query 61 ctcttaGCAACATTCATCAA-C----CAGATTCAC--T-ATCATCTTATAACACATCTTC 112
|||||||||||||||||||| | ||||||||| | |||||||||||||||||||||
Sbjct 60 CTCTTAGCAACATTCATCAACCAGAGCAGATTCACTATCATCATCTTATAACACATCTTC 119
Query 113 TTCCTCTAAAGTTTATTTTCTTAAACCTTATTAC-AAAAATATGATCTCCAAAAGTTGA- 170
||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 120 TTCCTCTAAAGTTTATTTTCTTAAA-CTTATTACAAAAAACATGATCTTCAAAAGTTGAT 178
Query 171 TTAATCTCTTTTTATCCATTTTCTTCTTCATTTCTCAATCTC-AA--------------T 215
||||||||||||||||||| ||||||||||||||||||| || || |
Sbjct 179 TTAATCTCTTTTTATCCATCTTCTTCTTCATTTCTCAATATCAAACTTTTCTTTTTTTGT 238
Query 216 AAGTTTAACATAAACCCTAATATTTTCTTGAtttttttCAAGAAAATAAAAAACATAAGT 275
||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 239 AAGCTTAACATAAACCCTAATATTTTCTTGATTTTTTTCAAGAAAAT-AAAAAC---A-T 293
Query 276 CATAGAGATGCTTGAAGTTAGATCAATCGATATGACTCCTAAATCACCAGAACCCGAATC 335
| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 294 -A-A-AGATGCTTGAAGTTAGATCAATGGATATGACTCCAAAATCACCAGAACCCGAATC 350
Query 336 CGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAA 410
Query 396 ACGccaccaccaccaccaccacAACA-C--C---GTTACATACAAAGAATGTCTCAAGAA 449
|||||||||||||||||||||||||| | | || || ||||||||||||||||||||
Sbjct 411 ACGCCACCACCACCACCACCACAACAACAACAAAGTCACTTACAAAGAATGTCTCAAGAA 470
Query 450 CCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTCATGCCGTCTCC 509
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 471 CCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTTATGCCGTCTCC 530
Query 510 TTCTTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAA 569
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTCGTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAA 590
Query 570 CTTTCACCGCCGTGAACCTGACGACTCCTCCTCCCTTCCACCACCGTCTCTTCTTCCATC 629
||| |||||||||||| ||||||| |||||| || |||||||||||||||||||||||||
Sbjct 591 CTTCCACCGCCGTGAAACTGACGATTCCTCCGCCGTTCCACCACCGTCTCTTCTTCCATC 650
Query 630 TTCAACCACAACCACCGCAATTGAGTATCAACCTCATCACCGTCACCACCCTCCTCCTCC 689
|||||| |||||| |||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 651 TTCAACAACAACCGCCGCAATTGAGTATCAGCCTCATCACCGTCATCATCCTCCTCCTCC 710
Query 690 GCTAGCTCCTCCTCTT-CCTCGTAGTCCTAGTTCATCTTCTCCGCCACCTATCTCCTCCT 748
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct 711 GCTAGCTCCTCCG-TTACCACGTAGTCCTAATTCATCTTCTCCGCCGCCTATCTCTTCCT 769
Query 749 CCTACATGCTTTTAGCTCTCTCTGGTAACAATAAAACCACACCGTTCTCAGATCTAAACT 808
|||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 770 CCTACATGCTTTTAGCTCTCTCCGGTAATAATAAAACCGCACCGTTCTCAGATCTAAACT 829
Query 809 TCGCCGCCGCGGCTAACAATCTCTCCGCCGCGCCTGGCTC-ACGGAAACGATTCAGGACA 867
||||||||||||||||| ||||||||||| |||||||||| | |||| |||||||||||
Sbjct 830 TCGCCGCCGCGGCTAACCATCTCTCCGCCACGCCTGGCTCGA-GGAAGCGATTCAGGACG 888
Query 868 AAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGCTCGAATCGGTTGGAAG 927
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 889 AAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAG 948
Query 928 ATTCAGAAACGCGACGAGGACGAGGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAA 987
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 ATTCAGAAACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAA 1008
Query 988 GGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGT 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGA 1068
Query 1048 GC--C-ACCG--C-------CGTTAACGGTATCGGCGGCGAGAACAATAACGATGATGGA 1095
|| | |||| | || ||||||||||||||||||||||| |||||||||||||
Sbjct 1069 GCAACCACCGTGCAGAGAAACGATAACGGTATCGGCGGCGAGAACAGTAACGATGATGGA 1128
Query 1096 GTTCGCGGTGGAAGCGGTTTAGCTAACAAAGACggtggtggtggtg-g-tggGAG-GT-- 1150
||||||||| | || | | | | | |||||||||||||| | | | ||| ||
Sbjct 1129 GTTCGCGGTTTA-GC--TA-A-CGA-CGGTGACGGTGGTGGTGG-GAGATTTGAGAGTGA 1181
Query 1151 T--TG-AG-AG-TGATAGTGGAGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAG 1205
| || || || |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TAGTGGAGGAGCTGATGGTGGCGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAG 1241
Query 1206 GAAACATCTTGTCGTTTTGCAGGGAAAGAGT-A-A-TAATGGAAGCTTAAGCTTTTGGTT 1262
||||||| |||||||||||||||||||||| | | ||||||||||||||||||| | ||
Sbjct 1242 AAAACATCATGTCGTTTTGCAGGGAAAGAGTTATAATAATGGAAGCTTAAGCTTT-GTTT 1300
Query 1263 T-AGCTTTTAGATCATAGAGAGTAAGCACTGGTATTACTATCGTTAATACGTTTTTATTA 1321
| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1301 TTAGCTTT-AGATCATAGAGAGTAAGCACTGGTATTATTATCGTTAATACGTTTT-ATTA 1358
Query 1322 ATATTAATTAAAACTCTTTTAGCTCCTTTTT 1352
|||||||||||| |||||||||||| |||||
Sbjct 1359 ATATTAATTAAA-CTCTTTTAGCTCTTTTTT 1388
> AT5G39760.1 | Symbols: AtHB23, HB23, ZHD10 | homeobox protein
23 | chr5:15911416-15912830 FORWARD LENGTH=1415
Length=1415
Score = 472 bits (255), Expect = 5e-132
Identities = 600/757 (79%), Gaps = 61/757 (8%)
Strand=Plus/Plus
Query 310 ACTCCTAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCA 369
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 170 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 229
Query 370 ATCTC-TTTCAGTAACGGAATCATCAAACGccaccaccaccaccacca-cAACACCG-TT 426
|| || ||| || ||||| ||||||||||||||||||||||||||||| | | || ||
Sbjct 230 ATTTCCTTT-AGCAACGGCATCATCAAACGCCACCACCACCACCACCATCCTCTCCTCTT 288
Query 427 -ACATACAAAGAATGTCTCAAGAACCACGCGGCGGCGATT-GGTGGTCACGCGCTTGACG 484
|| ||||||||||||||||| |||||||||||||| || ||||||||||| || ||||
Sbjct 289 TACTTACAAAGAATGTCTCAAAAACCACGCGGCGGCT-TTAGGTGGTCACGCTCTCGACG 347
Query 485 GTTGCGGCGAATTCATGCCGTCTCCTTCTTCAA-CACCTTCCGATCCAACTTCTCTCAAG 543
||||||||||||||||||||||||| || |||| | ||| |||||||||||||||||||
Sbjct 348 GTTGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCCT-CCGATCCAACTTCTCTCAAA 406
Query 544 TGTGCAGCTTGTGGTTGTCACCGTAACTTTC-ACCGCCGTGAACCTGACGACTCCTCCTC 602
||||| |||||||| || |||||||| |||| |||||||||| || || || | |
Sbjct 407 TGTGCTGCTTGTGGCTGCCACCGTAA-TTTCCACCGCCGTGATCCAGATAACAACAACGA 465
Query 603 C-CTTCCACCACCGTCTCTTCTTCCATC-TTCAACCACAACCACCGCAATTGAGTATCAA 660
| ||||| | | || || || || || ||| | || | ||| | |||||||||
Sbjct 466 CTCTTCC-CAAA--TCCCTCCT-CC-TCCTTC--C-AC--CG-CCGTA---GAGTATCAA 511
Query 661 CCTCATCACCGTCACCACCCTCCTCCTCCGCTAGCTCCTCCTCTTCCTCGTAGTCCTAGT 720
||||| |||||||| || || || || || | | ||||||| | || ||||||||||
Sbjct 512 CCTCACCACCGTCATCATCCACCACCACCACCACCTCCTCCACCACCACGTAGTCCTAAC 571
Query 721 TCATCTTCTCCGCCACCTATCTCCTCCTCCTACATGCTTTTAGCTCTCTCTGGTAAC-AA 779
||| ||||||| ||||| ||||| ||||| |||||||| ||| ||||||| |||| | ||
Sbjct 572 TCAGCTTCTCCTCCACCAATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGTA-CTAA 630
Query 780 TAA-AACCACA-C--C---G-TTCT--CA--GATCTAAACTTCGCCGCCGCGG--CTAAC 825
||| ||| ||| | | | |||| | ||||| |||||| |||||| | | |||
Sbjct 631 TAACAACAACAACAACTTAGCTTCTTTCTCCGATCTTAACTTCTCCGCCG-GAAAC-AAC 688
Query 826 -A--ATCTCT-CCGCCG-CG--C-CT----GGCTCACGGAAACGATTCAGGACAAAGTTT 873
| | | | || || | | || || || || ||| ||||| | ||||| ||
Sbjct 689 CACCACCACCACCACCAACATACTCTTCACGGATCTCGTAAAAGATTCCGAACAAAATTC 748
Query 874 AGCTCAAAT-CAGAAAGAGAAGATGCATGAATTCGCCGCTCGAATCGGTTGGAAGATTCA 932
||| || | |||||||||||||||||||||||||||| || | ||||||||||| ||
Sbjct 749 AGC-CAGTTTCAGAAAGAGAAGATGCATGAATTCGCCGAACGTGTTGGTTGGAAGATGCA 807
Query 933 GAAACGCGACGAGGACGAGGTTCGTGATTTTTGCCGTG-AGATCGGAGTTGATAAAGGTG 991
||||| ||||| ||||| ||||||||||||||||| | ||||||||||||||||| |||
Sbjct 808 AAAACGTGACGAAGACGATGTTCGTGATTTTTGCCG-GCAGATCGGAGTTGATAAAAGTG 866
Query 992 TTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTT 1028
|||||||||||||||||||||| ||||||||| ||||
Sbjct 867 TTCTCAAAGTTTGGATGCATAACAACAAAAACACCTT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5