BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484667

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29000.1 | Symbols:  | Calcium-binding EF-hand family protei...   411    5e-114


> AT3G29000.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr3:11005779-11006414 FORWARD LENGTH=636
Length=636

 Score =  411 bits (222),  Expect = 5e-114
 Identities = 311/353 (88%), Gaps = 9/353 (3%)
 Strand=Plus/Plus

Query  198  TGATCTTTCTAGGGAAGACGCAGAGATGGTTATGAGAAGTTTATCACTTTTTTCCGACCA  257
            |||| ||||||| ||||| |||||||||||||||||||| |||   |||||||   | | 
Sbjct  255  TGATATTTCTAGAGAAGAGGCAGAGATGGTTATGAGAAGCTTAGGGCTTTTTT---A-C-  309

Query  258  AGAAAGCGATGATCAGCTTCAAGAACGGTACAGTGCGAAAGAAGTTTCAAGTTTGTTCGA  317
               || ||||||||||||||||||||  |||||||| |||||||| || |||||||||||
Sbjct  310  ---AA-CGATGATCAGCTTCAAGAACAATACAGTGCAAAAGAAGTCTCGAGTTTGTTCGA  365

Query  318  AGAGAAAGAAGCGAGTTTGGAAGAAGTGAAACAAGCTTTTGATGTGTTTGATGAAAACAG  377
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| 
Sbjct  366  AGAGAAAGAAGCGAGTTTGGAAGAAGTCAAACAAGCTTTTGATGTGTTTGACGAAAACAA  425

Query  378  AGATGGTTTCATTGATGCTATAGAGTTACAAAAAGTTTTGACAACCTTAGGTTTTAAAGA  437
            |||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||| |
Sbjct  426  AGATGGTTTCATTGATGCTATAGAGTTACAGAGAGTTTTGACAATCTTAGGGTTTAAACA  485

Query  438  AAGAGCTTACTTAGACAATTGCTTGGTAATGATTAGGACATTCGATGGAAACAAAGACGG  497
            | || |||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||
Sbjct  486  AGGATCTTACTTAGACAATTGTTTGGTAATGATTAGGTCATTAGATGGGAACAAAGATGG  545

Query  498  AAAACTCGATTTTTACGAGTTTGTGAAATTCATGGAGAATAGTTTTTGTTGAA  550
            |||| |||||||| |||||||||| ||||||||||||| ||| |||| |||||
Sbjct  546  AAAAATCGATTTTAACGAGTTTGTTAAATTCATGGAGACTAGCTTTTATTGAA  598


 Score =  289 bits (156),  Expect = 2e-77
 Identities = 186/200 (93%), Gaps = 3/200 (2%)
 Strand=Plus/Plus

Query  1    CAAAACATAACCATGGAGTCGAAATCTTCTTCTTC-TCT-T-CCTTTGTTTACTCTGTTC  57
            ||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||
Sbjct  1    CAAAACATAACCATGGAGTCGAAATCTTCTTCTTCTTCTCTACCTTTGTTTGCTCTGTTC  60

Query  58   AACTTCTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACTCGCATCTTTTTATCAAGA  117
            || || ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  61   AATTTTTTCCTCATAAGTTTTTGCAGATGGGTTTCTTCTACACGTATCTTTTTATCAAGA  120

Query  118  TTCGTCCCTCTTCTTCAACATCATCAACGTGTTTTCGACAAAAATAACAACAAAGATCAA  177
            ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct  121  TTCGTCCCTCTTCTTCAACATCATCAACGCGTTTTCGACAAAAAGAACAACAAAGACCAA  180

Query  178  CAAGAGAGTTTAATCAAACA  197
            ||||||| ||| | ||||||
Sbjct  181  CAAGAGACTTTGACCAAACA  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5