BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484671
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29030.1 | Symbols: ATEXPA5, ATEXP5, ATHEXP ALPHA 1.4, EXP5,... 1792 0.0
AT1G26770.2 | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPH... 167 3e-40
> AT3G29030.1 | Symbols: ATEXPA5, ATEXP5, ATHEXP ALPHA 1.4, EXP5,
EXPA5 | expansin A5 | chr3:11011308-11013358 REVERSE LENGTH=1288
Length=1288
Score = 1792 bits (970), Expect = 0.0
Identities = 1149/1229 (93%), Gaps = 38/1229 (3%)
Strand=Plus/Plus
Query 1 AATTAAATTAAAATAAGTATAGTGAAGACCAATAAGCAATTGCATGGACCCTGATTGATT 60
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 57 AATTAAATTATAATAAGTATAGTGAAGACCAATAAGCAGTTGCATGGACCCTGATTGATT 116
Query 61 CATTACCGCTAAAACTTTGTCTGAATCCTTCTTCCTATTTATACCACTCTCTTCTTCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CATTACCGCTAAAACTTTGTCTGAATCCTTCTTCCTATTTATACCACTCTCTTCTTCTTC 176
Query 121 TCCATTTTCATTACACCGAACTTCTCACATCTCCACATTCTGTATTTTGAC------GAA 174
|||| |||||| ||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 177 TCCAGTTTCATCACACCAAACTTCTCACATCTCCTCATTCTGTATTTTGACAAAAAAAAA 236
Query 175 A-A------------TCTCTCCTTTGCATGTTGTGATT-CTTTTGCTTCACAACATGGGC 220
| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 237 ACACCCTTTGTTTTTTCTCTCCTTTGCATGTTGTGATTGTTTTTGCTTCACAACATGGGA 296
Query 221 GTTTTAGTAATCTCGGTTCTTGTGGTGCATCTCCTAGTTTTTTCCGTCTGCGTTCAAGGC 280
||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||| |||
Sbjct 297 GTTTTAGTAATCTCGCTTCTCGTGGTTCATCTCCTAGCTTTTTCCGTCTGCGTTCAGGGC 356
Query 281 GTATACCGTCGTGGTGGCCACCATCCCGGCGGCCACATGGGACCTTGGATCAACGCTCAT 340
| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 GGCTACCGTCGTGGCGGACACCATCCCGGCGGTCACATGGGACCTTGGATCAACGCTCAT 416
Query 341 GCCACATTTTACGGCGGCGGTGACGCTTCCGGCACTATGGGTGGAGCATGCGGGTACGGG 400
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GCCACTTTTTACGGCGGCGGTGATGCTTCCGGCACTATGGGTGGAGCATGCGGGTACGGC 476
Query 401 AATCTGTACAG-CACAGGTTATGGACTGGAGACGGCGGCATTGAGCACAGCTTTATTTGA 459
|||||||| || || ||||||||||||||||||||| || |||||||||| ||||| ||
Sbjct 477 AATCTGTATAGCCA-AGGTTATGGACTGGAGACGGCAGCGCTGAGCACAGCGTTATTCGA 535
Query 460 CCAAGGACTTAGTTGTGGCGCATGTTTTGAGCTGATGTGTGTCAACGATCCTCAATGGTG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCAAGGACTTAGTTGTGGCGCATGTTTTGAGCTGATGTGTGTCAACGATCCTCAATGGTG 595
Query 520 CATAAAAGGCCGATCCATTGTGGTCACTGCCACTAACTTTTGTCCTCCTGGTGGTGCATG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CATAAAAGGCCGATCCATTGTGGTCACTGCCACTAACTTTTGTCCTCCTGGTGGTGCATG 655
Query 580 TGACCCTCCCAACCACCATTTCGATCTTTCTCAGCCGATCTACGAGAAAATTGCTCTATA 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 656 CGACCCTCCCAACCACCATTTCGATCTTTCTCAGCCGATCTACGAGAAAATTGCTCTCTA 715
Query 640 CAAATCCGGTATCATTCCGGTTATGTACAGAAGGGTTCGGTGCAAGAGAAGTGGCGGGAT 699
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 716 CAAATCCGGTATCATTCCCGTTATGTATAGAAGGGTTCGGTGCAAGAGAAGTGGTGGGAT 775
Query 700 AAGGTTCACGATCAATGGCCACTCATACTTTAACTTGGTGTTGGTCACAAACGTGGGTGG 759
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAGGTTCACGATCAACGGCCACTCATACTTTAACTTGGTGTTGGTCACAAACGTGGGTGG 835
Query 760 AGCCGGGGACGTACACTCGGTCTCAATGAAAGGGTCGAGGACAAAATGGCAATTAATGTC 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGCCGGGGACGTACACTCGGTCTCAATGAAAGGGTCGAGGACAAAATGGCAATTAATGTC 895
Query 820 AAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTATCTTAATGGTCAAAGTCTGTCGTT 879
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 896 GAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTATCTCAATGGTCAAAGTCTGTCGTT 955
Query 880 TGTTGTTACCACAAGTGATCGTCGAAGTGTCGTCTCGTTTAATGTTGCACCTCCCACTTG 939
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 956 TGTTGTTACCACAAGTGATCGTCGAAGTGTCGTCTCTTTTAATGTTGCACCACCCACTTG 1015
Query 940 GTCCTTTGGCCAGACCTACACCGGAGGGCAGTTTCGGTATTAATTATATATAATCGGTTT 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTCCTTTGGCCAGACCTACACCGGAGGGCAGTTTCGGTATTAATTATATATAATCGGTT- 1074
Query 1000 TCGTTTTGTTATTGTG-tttttttttttt---CGGTTCCAAGTTGGGGACTCTTTTTTGG 1055
|| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 -CGGTTTGTTATTGTGCTTTTTTTTTTTTTTTCGGTTCCAAGTTGGGGACTCTTTTTTGG 1133
Query 1056 TAACCAATTGAGATTGGGGCTGATAGTGATATGTAGCGAATAT--GTGTGGGAACGAGAA 1113
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 TAACCAATTGAGATTGGGACTGATAGTGATATGTAGCGAATATATGTGTGGGAACGAGAA 1193
Query 1114 AGAGAAAAGT---AT-AATTCTCGTTTTTATAATATAAGAAAATGAAAGTGATGTTATGT 1169
| ||| |||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1194 AAAGAGAAGTTTTATTAATTCTCGTTTT-ATAATATAAGAAAATGAAAGTGATGTTATGT 1252
Query 1170 ATTT-G-TTTT-AATTAATTTGAGTACTA 1195
|||| | |||| |||||||||||||||||
Sbjct 1253 ATTTTGCTTTTTAATTAATTTGAGTACTA 1281
> AT1G26770.2 | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA
1.1, EXP10, EXPA10 | expansin A10 | chr1:9259750-9260792
FORWARD LENGTH=805
Length=805
Score = 167 bits (90), Expect = 3e-40
Identities = 170/208 (82%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 665 TACAGAAGGGTTCGGTGCAAGAGAAGTGGCGGGATAAGGTTCACGATCAATGGCCACTCA 724
||||||||||||| |||| |||||| || || ||||| |||||||| || |||||||||
Sbjct 491 TACAGAAGGGTTCCTTGCAGGAGAAGAGGAGGAATAAGATTCACGATAAACGGCCACTCA 550
Query 725 TACTTTAA-CTTGGTGTTGGTCACAAACGTGGGTGGAGCCGGGGACGTACACTCGGTC-T 782
||||| || ||| ||| || |||||||||| ||||| ||||| ||||| ||||||| |
Sbjct 551 TACTTCAACCTT-GTGCTGATCACAAACGTCGGTGGTGCCGGAGACGTTCACTCGG-CGG 608
Query 783 CAATGAAAGGG-TCGAGGACAAAATGGCAA-TTAATGTCAAGAAATTGGGGGCAAAATTG 840
| || ||||| || || ||| |||||| | |||||||| || ||||||||||||||
Sbjct 609 CGAT-CAAGGGTTCAAGAACAGTGTGGCAAGCT-ATGTCAAGGAACTGGGGGCAAAATTG 666
Query 841 GCAAAGCAACTCTTATCTTAATGGTCAA 868
||||||||||||||| || || ||||||
Sbjct 667 GCAAAGCAACTCTTACCTCAACGGTCAA 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5