BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484672
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29034.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 544 4e-154
> AT3G29034.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:11030064-11030633 REVERSE LENGTH=570
Length=570
Score = 544 bits (294), Expect = 4e-154
Identities = 440/504 (87%), Gaps = 35/504 (7%)
Strand=Plus/Plus
Query 1 AATCTCTCCATTCATCAAAGAATCTTAAAAATGGTgagagaaagaagaaagacggagaaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTCTTCATTCATCAAAGAATCTTAAAAATGGTGAGAGAAAGAAGAAAGACGGAGAAA 60
Query 61 gtagaagagaa--g----caagaagttgtagatcaagaagagaaggtgaagccaagacaa 114
||||||||||| | ||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 GTAGAAGAGAAACGAGAACAAGAAGTTGTAGATCAAGAAGAGAAGGTGAAGCCGAGGCAA 120
Query 115 agaagtgtgagcagaagaaACATGCAATCTCTGGTGATCGGACTCGTTGGAGCCGCGTTA 174
||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 121 AGAAGCGTGAGCAGAAGAAACATGCAATCTCTGGTCATCGGACTCGTTGGAGGTGCGTTA 180
Query 175 ACTCTCGGTGCTTATTCTCAGACATATGTTGATCCGGGCAAATCTCTTGGCGCTGGCCTC 234
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 181 ACCCTCGGTGCTTATTCTCAGACATATGTTGATCCGGGCAAGTCTATTGGCGCTGGCCTC 240
Query 235 TTTGTTCTCTTCTTTGGCTTACTTGTCAGCGAAGGTTTCATCTCTCTTTAAA-AAGAATG 293
||||| |||||||||||||| |||||||| |||||||||||||||||||||| || |||
Sbjct 241 TTTGTCCTCTTCTTTGGCTTGCTTGTCAGTGAAGGTTTCATCTCTCTTTAAATAACAAT- 299
Query 294 ATT-CTATATAAGCAAATTAAACCttttttttttGTTTATGTATGTTACAAA-ATTACGA 351
||| || ||||||||||| ||||||| || |||||||||||||| | ||||| || || |
Sbjct 300 ATTTCTGTATAAGCAAATCAAACCTTCTTCTTTTGTTTATGTATATGACAAATAT-AC-A 357
Query 352 ATATCTTTGAGAATCTCGTTTCATTTTTATTTTATTTCAATTGTTGTGGATATCTTGGAC 411
||||| |||| |||| ||||||||| |||||||||||| |||||| | || |||||||
Sbjct 358 -TATCTATGAGCATCTTGTTTCATTTATATTTTATTTCACTTGTTG-G-AT--CTTGGAC 412
Query 412 TTTTGA--A---T-A-------T-T---GTTTTTACGGATTAGTGttttttttttGTCTT 454
|||||| | | | | | |||||||||||||| ||||| ||||| | |||
Sbjct 413 TTTTGATTAAAGTGACGAACACTATATTGTTTTTACGGATTATTGTTTATTTTTGG-CTT 471
Query 455 GTAAGAATATGTTTTAATCTTTGA 478
||||||||||||||| ||||||||
Sbjct 472 GTAAGAATATGTTTTGATCTTTGA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22756068591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5