BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484673
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29035.1 | Symbols: ATNAC3, ANAC059, NAC3 | NAC domain conta... 1317 0.0
AT5G39610.1 | Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC... 534 6e-151
> AT3G29035.1 | Symbols: ATNAC3, ANAC059, NAC3 | NAC domain containing
protein 3 | chr3:11033665-11035308 FORWARD LENGTH=1433
Length=1433
Score = 1317 bits (713), Expect = 0.0
Identities = 960/1075 (89%), Gaps = 34/1075 (3%)
Strand=Plus/Plus
Query 60 CTGAAATGGATTACAAGGTATCAAGAATTGGGGAGATCGTAGAAGGAGAAGTAGAAGATT 119
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 170 CTGAAATGGATTACAAGGTATCAAGAAGTGGGGAGATAGTAGAAGGAGAAGTAGAAGATT 229
Query 120 CAGAGAAGATTGATTTGCCACCTGGTTTCAGATTTCACCCAACTGATGAAGAACTTATAA 179
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CAGAAAAGATTGATTTACCACCTGGTTTCAGATTTCACCCAACTGATGAAGAACTTATAA 289
Query 180 CTCACTATCTAAGACCAAAGGTTCTAAACACttttttttCTGCTATAGCTATTGGTGAAG 239
| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 290 CACACTATCTAAGACCAAAGGTTGTAAACTCTTTTTTCTCTGCTATAGCTATTGGTGAAG 349
Query 240 TTGATCTCAACAAGGTCGAGCCATGGGACTTGCCTTGGAAGGCTAAGATAGGGGAAAAAG 299
||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 350 TTGATCTCAACAAAGTCGAGCCTTGGGACTTGCCTTGGAAGGCTAAGCTTGGGGAAAAAG 409
Query 300 AGTGGTACTTCTTTTGCGTACGAGACCGGAAATACCCGACCGGTTTAAGGACGAATCGGG 359
|||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |
Sbjct 410 AGTGGTACTTCTTTTGCGTAAGAGACCGAAAATACCCGACTGGTTTAAGAACGAATCGTG 469
Query 360 CTACTAAAGCCGGTTATTGGAAAGCTACAGGGAAAGATAAAGAGATCTTCAAAGGGAAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTACTAAAGCCGGTTATTGGAAAGCTACAGGGAAAGATAAAGAGATCTTCAAAGGGAAAT 529
Query 420 CTCTTGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCTCCTAAAGGAGTAA 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 530 CTCTTGTTGGTATGAAGAAAACATTGGTTTTCTACAAAGGAAGAGCTCCTAAAGGAGTAA 589
Query 480 AAACCAATTGGGTCATGCATGAATATCGCTTAGAAGGCAAATAT-GCCATCGATAATCTC 538
|||| ||||||||||||||||| ||||| ||||||||||||| | || ||||||||||||
Sbjct 590 AAACAAATTGGGTCATGCATGAGTATCGATTAGAAGGCAAAT-TCGCTATCGATAATCTC 648
Query 539 CCTAAAACCGCTAAGAACGAATGTGTTATTAGTCGTGTTTTTCATAAACGGGCAGATGGT 598
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 649 TCTAAAACCGCTAAGAACGAATGTGTTATTAGTCGTGTTTTTCATACACGGACTGATGGT 708
Query 599 ACGAAGGCGCATATGTCCGTCGGTTTACCTCCGCTGATGGATTCTTCTCCATATCTAAAG 658
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 709 ACGAAGGAGCATATGTCCGTTGGTTTACCTCCGCTGATGGATTCTTCTCCATATCTAAAG 768
Query 659 AGTAGAGGACGAGACTCTTTTGCCGGAACCACCCTTGGTGGTTTGTTTTCTAACATGACC 718
|||||||||| ||||||||| ||||| |||||||||||||| ||||| ||| || | |||
Sbjct 769 AGTAGAGGACAAGACTCTTTAGCCGGGACCACCCTTGGTGGGTTGTTGTCTCACGTTACC 828
Query 719 GGCTTCCTC-GACAAAACAACCGACGACAAGAGTCTTGTGGCCGAGTTTAAAGACGATTT 777
|||| || ||| |||||||||| |||||||||||||||||||| |||||| || |
Sbjct 829 TACTTC-TCCGACCAAACAACCGATGACAAGAGTCTTGTGGCCGATTTTAAA-AC--T-- 882
Query 778 TAAAAATACCATGTTCGGTTCTGCATCAACTAACTTGATACCAAACATTAG-TTCTCTGC 836
| ||||||| ||||| | ||| |||||||| |||||||||| || |||||| |
Sbjct 883 -A------CCATGTTTGGTTCCGGATCGACTAACTTTTTACCAAACAT-AGGTTCTCTAC 934
Query 837 TAGACTATGG-TCCTCTGTTTCTGCAAGACAATTCTTCCA-TACTGAAGATGTTGCTTGA 894
|||||| | | |||||||||||| ||| |||||||||| | |||||||||||||||||||
Sbjct 935 TAGACT-TCGATCCTCTGTTTCTACAAAACAATTCTTC-AGTACTGAAGATGTTGCTTGA 992
Query 895 CAGTGAAGAAACCCAATTCAAGAAGAATCTTCAGAATTCTGGTTCCTCGGAGAGTGAATT 954
|| ||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||| |
Sbjct 993 CAATGAAGAAACCCAATTTAAGAAGAATCTTCACAATTCAGGTTCATCAGAGAGTGAACT 1052
Query 955 AACCGCGAGTTCTTTGCACGGTCACGATCCTTGTGCTTCAACTGGACCAGTGAATCTTGA 1014
||| |||||||||| ||| |||||| || ||| || ||| ||||| ||||||||||||||
Sbjct 1053 AACAGCGAGTTCTTGGCAAGGTCACAATTCTTATGGTTCCACTGGTCCAGTGAATCTTGA 1112
Query 1015 TTGTGTTTGGAATTTCTGATTTTGGAAATTGGAACATTGGGA-GAAAAAATAGGAGGTAT 1073
||| |||||||| |||||| |||||||| | ||| ||| ||| | || |||| |||||
Sbjct 1113 TTGCGTTTGGAAATTCTGAATTTGGAAAATCGAAAATTTGGATGTTAAC-TAGGGGGTAT 1171
Query 1074 ATAGG-TTT--AA---CAGT--ATATGTG--TTATGTGTTTGCTTTAGAATCTAG 1118
||||| ||| || |||| |||| || ||||||||| |||||||| |||||
Sbjct 1172 ATAGGGTTTTTAAAAACAGTGTATATATGCGTTATGTGTTAGCTTTAGATTCTAG 1226
> AT5G39610.1 | Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC6
| NAC domain containing protein 6 | chr5:15858400-15859788
REVERSE LENGTH=1187
Length=1187
Score = 534 bits (289), Expect = 6e-151
Identities = 438/507 (86%), Gaps = 22/507 (4%)
Strand=Plus/Plus
Query 110 GTAGAAGATTCAGAGAAGAT-T-GATTTGCCACCTGGTTTCAGATTTCACCCAACTGATG 167
|||||||| | | |||| || | ||| | ||||| || |||||||||||||| |||||||
Sbjct 172 GTAGAAGA-TGA-AGAACATATAGATCTACCACCAGGATTCAGATTTCACCCTACTGATG 229
Query 168 AAGAACTTATAACTCACTATCT-AAGACCAAAGGTTCTAAACACttttttttCTGCTA-T 225
||||||| ||||||||||| || || |||||||||| | |||||||| || ||||||| |
Sbjct 230 AAGAACTCATAACTCACTACCTCAA-ACCAAAGGTTTTCAACACTTTCTTCTCTGCTACT 288
Query 226 AGCTATTGGTGAAGTTGATCTCAACAAGGTCGAGCCATGGGACTTGCCTTGGAAGGCTAA 285
|| |||||||||||||||||||||||| | ||||| |||||||| || |||||||||||
Sbjct 289 -GCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGGACTTACCATGGAAGGCTAA 347
Query 286 GATAGGG-GAAAAAGAGTGGTACTTCTTTTGCGT-ACGAGACCGGAAATACCCGACCGGT 343
||| ||| |||||||| ||||| ||||| || || | |||||||||||||||||||||||
Sbjct 348 GAT-GGGAGAAAAAGAATGGTATTTCTTCTGTGTGA-GAGACCGGAAATACCCGACCGGT 405
Query 344 TTAAGGACGAATCGGGCTACTA-AAGCCGGTTATTGGAAAGCTACAGGGAAAGATAAAGA 402
|||||||| || ||||| || | ||||||||||||||||||| ||||| ||||| |||||
Sbjct 406 TTAAGGACAAACCGGGCGAC-AGAAGCCGGTTATTGGAAAGCCACAGGAAAAGACAAAGA 464
Query 403 GATCTTCAAAGGGAAA-TCTCTTGTTGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAA 461
||| ||||| |||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct 465 GATATTCAA-GGGAAAATCACTTGTGGGTATGAAGAAAACTTTGGTTTTCTATAAAGGAA 523
Query 462 GAGCTCCTAAAGGAGTAAAAACCAATTGGGTCATGCATGAATATCGCTTAGAAGGCAAAT 521
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 524 GAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATCGTTTAGAAGGCAAAT 583
Query 522 AT-GCCATCGATAATCT-CCCTAAAACCGCTAAGAACGAATGTGTTAT-TAGTCGTGTTT 578
|| | || || ||||| ||| ||| | |||||||||||||| ||||| | |||||||||
Sbjct 584 ATTGT-ATTGAAAATCTTCCCCAAA-CAGCTAAGAACGAATGGGTTATAT-GTCGTGTTT 640
Query 579 TTCATAAACGGGCAGATGGTACGAAGG 605
| || ||||| || |||||||| ||||
Sbjct 641 TCCAAAAACGTGCCGATGGTACAAAGG 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5