BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484678
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29070.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1096 0.0
> AT3G29070.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr3:11050130-11051153 FORWARD LENGTH=741
Length=741
Score = 1096 bits (593), Expect = 0.0
Identities = 664/697 (95%), Gaps = 9/697 (1%)
Strand=Plus/Plus
Query 1 TTGTTGTTGAAACTAGAAGATGGATTTGCTACCATCAAAATATAAGATTCACAAGACAAA 60
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 45 TTGTTGCTGAAACTAGAAGATGGATTTGCTACCATCAAGATATAAGATTCACAAGACAAA 104
Query 61 GTTAAGATGGATCTTAACAACGATGAC---GATGATGATGA---T--T-AGAAGAGGAGA 111
|||||||||||||||||||| |||||| ||||||||||| | | |||||||||||
Sbjct 105 GTTAAGATGGATCTTAACAATGATGACGATGATGATGATGATGGTGATGAGAAGAGGAGA 164
Query 112 ATCAATGAGATTAGATATGGAATCAGGTACCTCAAAATGTATCTCCGATGACATCAAAAC 171
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 165 ATCAATGAGATTAGATATGGAATCAGGTAACACAAAATGTATCTCCGATGACATCAAAAC 224
Query 172 AAATTACATGACCGTTGGGACTTATTCCATCGTCAATCCTAACGAAGGCCACCATCTTCC 231
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 225 AAATTACATGACCGTTGGGACTTATTCCATCGTCAATCCCAACGAAGGCCACCATCTTCC 284
Query 232 GCCTTCTCACAAACTCTTCGTCACTGTGTCATCTCCTAAAGGGAAAAGCCATCATCATGC 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TCCTTCTCACAAACTCTTCGTCACTGTGTCATCTCCTAAAGGGAAAAGCCATCATCATGC 344
Query 292 AGAGAATGTAGAGTCCGGGAAATTCGTGTTCACGGCAGATGAAACCGGCGATTACATGAC 351
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 345 AGAGAATGTAGAGTCCGGGAAATTCGTGTTCACGGCAGAAGAAACCGGCGATTACATGAC 404
Query 352 GTGTTTTGTGGCTCCAGGTTATAGACCTACGGCGAGATTCGCGGTTGATTTCGAATGGAA 411
|||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||
Sbjct 405 GTGTTTTGTGGCTCCAGGTTATAGACCTACCGCAAAATTCGCGGTTGATTTCGAGTGGAA 464
Query 412 AAGCGGTGTAGAGGCTAAAGATTGGACCACTATCGCCAAGAGAGGCCAAATAACCATGCT 471
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 465 AAGCGGTGTAGAGGCTAAAGATTGGACCACTATAGCCAAGAGAGGCCAAATAACCATGCT 524
Query 472 GGAGGTGGAGGTGAGGAAATTACTCGACGTGACCGAAACTATACATGACGAAATGTTTCA 531
|||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 525 AGAGGTGGAGGTGAGGAAACTACTCGACGTGACAGAAACTATACATGAAGAAATGTTTCA 584
Query 532 GCTCAGGGAGAGGGAACGGGAAATGCAAGAGTTAAACCGATCAACGAATTCAAGAATGGC 591
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GCTCATAGAGAGGGAAAGGGAAATGCAAGAGTTAAACCGATCAACGAATTCAAGAATGGC 644
Query 592 AGCTCTCAGCTTATTGTCGTTTGTGGTAACAATGTCGGTCGCGGGTTTACAACTATGGCA 651
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 645 AGCTCTCAGTTTACTGTCGTTCGTGGTAACAATGTCGGTCGCGGGTTTACAACTACGGCA 704
Query 652 CCTCAAGTCATTCTTGGAGAGGAAGAAGCTCCTCTGA 688
|||||||||||||||||||||||||||||||||||||
Sbjct 705 CCTCAAGTCATTCTTGGAGAGGAAGAAGCTCCTCTGA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5